Wall clock time and date at job start Tue Mar 31 2020 19:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00059 * 2 1 4 4 C 1.52999 * 109.47130 * 184.72978 * 3 2 1 5 5 N 1.46497 * 109.47283 * 64.16103 * 4 3 2 6 6 C 1.34770 * 120.00374 * 264.43361 * 5 4 3 7 7 O 1.21280 * 120.00707 * 184.67831 * 6 5 4 8 8 C 1.50709 * 119.99917 * 4.68512 * 6 5 4 9 9 H 1.08999 * 109.46688 * 32.73000 * 8 6 5 10 10 N 1.46892 * 109.47344 * 152.72952 * 8 6 5 11 11 C 1.52999 * 109.46784 * 272.73409 * 8 6 5 12 12 C 1.53002 * 109.47124 * 174.25150 * 11 8 6 13 13 C 1.50699 * 109.47235 * 180.02562 * 12 11 8 14 14 H 1.07997 * 119.99655 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00016 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00219 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00093 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47026 * 59.99605 * 17 15 13 19 19 H 1.48498 * 109.46773 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.46776 * 299.99712 * 17 15 13 21 21 C 1.46510 * 119.99883 * 84.43521 * 5 4 3 22 22 H 1.09004 * 109.46912 * 235.84632 * 21 5 4 23 23 C 1.52994 * 109.46857 * 355.84670 * 21 5 4 24 24 C 1.50697 * 109.47137 * 115.84706 * 21 5 4 25 25 C 1.38239 * 119.99890 * 314.39632 * 24 21 5 26 26 C 1.38235 * 119.99621 * 179.80647 * 25 24 21 27 27 C 1.38238 * 119.99993 * 0.40068 * 26 25 24 28 28 C 1.38227 * 119.99935 * 359.85381 * 27 26 25 29 29 C 1.38230 * 120.00556 * 359.95311 * 28 27 26 30 30 H 1.09004 * 109.46729 * 304.73605 * 1 2 3 31 31 H 1.08996 * 109.47121 * 64.73218 * 1 2 3 32 32 H 1.08994 * 109.47115 * 184.73633 * 1 2 3 33 33 H 1.08995 * 109.47060 * 64.72788 * 3 2 1 34 34 H 1.09007 * 109.47277 * 304.72875 * 3 2 1 35 35 H 1.09003 * 109.47107 * 304.15937 * 4 3 2 36 36 H 1.09003 * 109.47483 * 184.16047 * 4 3 2 37 37 H 1.00899 * 111.00513 * 296.04925 * 10 8 6 38 38 H 1.00905 * 111.00086 * 60.00090 * 10 8 6 39 39 H 1.09006 * 109.46854 * 294.24354 * 11 8 6 40 40 H 1.08997 * 109.47526 * 54.24706 * 11 8 6 41 41 H 1.09006 * 109.46605 * 299.99356 * 12 11 8 42 42 H 1.08997 * 109.47281 * 59.99406 * 12 11 8 43 43 H 0.96994 * 120.00033 * 180.02562 * 16 15 13 44 44 H 1.08996 * 109.47608 * 299.99959 * 23 21 5 45 45 H 1.08997 * 109.47757 * 60.00402 * 23 21 5 46 46 H 1.09002 * 109.46814 * 180.02562 * 23 21 5 47 47 H 1.07994 * 120.00227 * 359.97438 * 25 24 21 48 48 H 1.07998 * 119.99995 * 180.22321 * 26 25 24 49 49 H 1.08000 * 120.00109 * 179.82883 * 27 26 25 50 50 H 1.08010 * 119.99848 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.00742 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5310 1.1866 -0.1189 5 7 3.8746 0.5906 -1.4123 6 6 4.0971 -0.7354 -1.5055 7 8 4.4641 -1.2164 -2.5566 8 6 3.8898 -1.6205 -0.3035 9 1 3.0768 -1.2233 0.3043 10 7 3.5502 -2.9787 -0.7482 11 6 5.1741 -1.6619 0.5270 12 6 4.9214 -2.4420 1.8187 13 6 6.1862 -2.4822 2.6369 14 1 7.0810 -2.0000 2.2719 15 6 6.2014 -3.1355 3.8509 16 7 5.1119 -3.7232 4.2952 17 14 7.7695 -3.1860 4.8649 18 1 8.1887 -1.8008 5.1976 19 1 7.5241 -3.9431 6.1186 20 1 8.8421 -3.8538 4.0847 21 6 3.9764 1.4359 -2.6046 22 1 3.3093 1.0551 -3.3780 23 6 3.5785 2.8697 -2.2486 24 6 5.3952 1.4197 -3.1123 25 6 6.4473 1.5704 -2.2284 26 6 7.7489 1.5515 -2.6936 27 6 7.9980 1.3902 -4.0437 28 6 6.9457 1.2448 -4.9282 29 6 5.6443 1.2597 -4.4626 30 1 -0.3633 0.5856 0.8446 31 1 -0.3633 0.4386 -0.9293 32 1 -0.3633 -1.0241 0.0849 33 1 1.7573 1.8158 0.9293 34 1 1.6232 1.8756 -0.8446 35 1 3.9100 0.5549 0.6844 36 1 3.9798 2.1772 -0.0447 37 1 2.6716 -2.9877 -1.2442 38 1 4.2888 -3.3692 -1.3140 39 1 5.9613 -2.1525 -0.0456 40 1 5.4821 -0.6451 0.7709 41 1 4.1342 -1.9513 2.3912 42 1 4.6134 -3.4587 1.5748 43 1 5.1225 -4.1825 5.1494 44 1 2.5523 2.8815 -1.8813 45 1 4.2454 3.2506 -1.4752 46 1 3.6537 3.4985 -3.1357 47 1 6.2525 1.7001 -1.1741 48 1 8.5710 1.6655 -2.0026 49 1 9.0148 1.3782 -4.4076 50 1 7.1404 1.1192 -5.9831 51 1 4.8221 1.1457 -5.1535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424095444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:55 Heat of formation + Delta-G solvation = -77.470141 kcal Electronic energy + Delta-G solvation = -30641.187101 eV Core-core repulsion = 26732.633015 eV Total energy + Delta-G solvation = -3908.554086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.68567 -39.89125 -38.85554 -37.28903 -36.67673 -34.81416 -33.47237 -31.91791 -31.76670 -30.75369 -30.13016 -28.09597 -27.22224 -25.66793 -24.61430 -23.65586 -23.44477 -22.46210 -21.46955 -19.93158 -18.62661 -18.34153 -17.87517 -17.66018 -17.07875 -16.81154 -16.68070 -16.43331 -16.28766 -15.85997 -15.72050 -15.33768 -14.99920 -14.81461 -14.60214 -14.25155 -14.23931 -13.88555 -13.82237 -13.65313 -13.42748 -13.17535 -13.15318 -12.90324 -12.76582 -12.61973 -12.53047 -12.47487 -12.25794 -11.95788 -11.85730 -11.77276 -11.67342 -11.54030 -11.17453 -10.93656 -10.51239 -10.47105 -9.82848 -9.78759 -9.62663 -9.39912 -8.11539 -6.22274 0.43519 0.51598 1.41766 1.45025 1.52570 1.63188 2.00500 2.45721 2.88637 2.91334 3.20821 3.55942 3.71529 3.74385 3.94703 4.05518 4.08744 4.13352 4.19178 4.24177 4.26400 4.32013 4.37059 4.42477 4.52357 4.58056 4.62659 4.64322 4.68329 4.74890 4.81320 4.87043 4.92252 4.96343 5.08536 5.12014 5.14336 5.25023 5.26077 5.52432 5.56979 5.58067 5.62118 5.73729 5.85963 5.99639 6.12783 6.15711 6.31808 6.32549 6.38167 6.54591 6.95223 7.20113 7.45491 8.99522 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.004102 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.845693 B = 6824.510161 C = 8620.805721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.413 6.413 3 C 0.039 3.961 4 C 0.090 3.910 5 N -0.593 5.593 6 C 0.498 3.502 7 O -0.575 6.575 8 C 0.084 3.916 9 H 0.120 0.880 10 N -0.817 5.817 11 C -0.078 4.078 12 C 0.046 3.954 13 C -0.543 4.543 14 H 0.053 0.947 15 C 0.005 3.995 16 N -0.929 5.929 17 Si 0.958 3.042 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.183 3.817 22 H 0.070 0.930 23 C -0.152 4.152 24 C -0.090 4.090 25 C -0.120 4.120 26 C -0.134 4.134 27 C -0.132 4.132 28 C -0.128 4.128 29 C -0.118 4.118 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.342 0.658 38 H 0.339 0.661 39 H 0.033 0.967 40 H 0.060 0.940 41 H -0.007 1.007 42 H 0.001 0.999 43 H 0.262 0.738 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.130 0.870 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.996 18.593 -15.288 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.333 6.333 3 C -0.038 4.038 4 C -0.033 4.033 5 N -0.325 5.325 6 C 0.285 3.715 7 O -0.455 6.455 8 C -0.031 4.031 9 H 0.138 0.862 10 N -0.346 5.346 11 C -0.117 4.117 12 C 0.009 3.991 13 C -0.582 4.582 14 H 0.071 0.929 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.783 3.217 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.198 1.198 21 C 0.080 3.920 22 H 0.088 0.912 23 C -0.209 4.209 24 C -0.091 4.091 25 C -0.138 4.138 26 C -0.152 4.152 27 C -0.150 4.150 28 C -0.145 4.145 29 C -0.137 4.137 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.011 0.989 42 H 0.020 0.980 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.134 0.866 48 H 0.148 0.852 49 H 0.157 0.843 50 H 0.158 0.842 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.798 17.897 -14.904 24.001 hybrid contribution 0.564 -0.034 -0.269 0.626 sum -5.234 17.863 -15.174 24.015 Atomic orbital electron populations 1.22824 0.79933 1.03118 1.00716 1.87894 1.21104 1.28705 1.95578 1.23277 0.93072 0.85112 1.02316 1.22123 0.94774 1.01783 0.84586 1.48091 1.68713 1.06269 1.09428 1.22207 0.75029 0.83425 0.90817 1.90619 1.47553 1.74984 1.32297 1.21756 1.00535 0.87818 0.93030 0.86226 1.58972 1.07933 1.18885 1.48777 1.21360 0.94039 0.99882 0.96382 1.18751 0.94776 0.94813 0.90744 1.21662 0.97932 1.34212 1.04347 0.92861 1.25879 0.99462 0.94988 0.99006 1.70108 1.29537 1.36378 1.20849 0.85611 0.79616 0.78661 0.77799 1.18921 1.20775 1.19784 1.19980 0.92275 0.92666 0.87089 0.91182 1.22215 1.02921 0.91995 1.03736 1.20200 0.95589 0.99347 0.94000 1.21026 0.92909 1.00431 0.99418 1.21387 0.96951 1.00343 0.96512 1.21413 1.00073 1.00103 0.93370 1.21388 0.92513 0.99920 1.00729 1.21149 0.97594 0.99843 0.95083 0.92798 0.93182 0.90099 0.90269 0.90891 0.90311 0.85491 0.84480 0.84775 0.94849 0.92130 0.98901 0.98023 0.92921 0.89761 0.90661 0.89769 0.86607 0.85221 0.84315 0.84205 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -10.07 8.05 -148.98 -1.20 -11.27 16 3 C 0.04 0.70 6.07 71.98 0.44 1.14 16 4 C 0.09 1.89 5.03 86.38 0.43 2.32 16 5 N -0.59 -15.18 2.03 -801.99 -1.63 -16.81 16 6 C 0.50 16.98 6.42 87.66 0.56 17.54 16 7 O -0.58 -22.81 15.51 -3.03 -0.05 -22.86 16 8 C 0.08 3.14 2.19 44.17 0.10 3.23 16 9 H 0.12 4.48 4.54 -2.39 -0.01 4.47 16 10 N -0.82 -31.25 8.54 -171.81 -1.47 -32.71 16 11 C -0.08 -3.45 4.48 30.59 0.14 -3.31 16 12 C 0.05 2.53 4.87 29.85 0.15 2.68 16 13 C -0.54 -31.75 9.11 25.60 0.23 -31.51 16 14 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 15 C 0.00 0.27 5.46 84.65 0.46 0.73 16 16 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 17 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 C 0.18 3.99 2.86 44.24 0.13 4.12 16 22 H 0.07 1.66 7.95 -2.38 -0.02 1.64 16 23 C -0.15 -2.01 8.01 71.98 0.58 -1.43 16 24 C -0.09 -2.27 3.71 -19.86 -0.07 -2.35 16 25 C -0.12 -3.13 9.22 22.27 0.21 -2.92 16 26 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 27 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 28 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 29 C -0.12 -2.86 9.67 22.27 0.22 -2.64 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 0.99 5.87 -2.38 -0.01 0.98 16 35 H 0.08 2.12 5.10 -2.39 -0.01 2.11 16 36 H 0.13 1.84 6.08 -2.39 -0.01 1.83 16 37 H 0.34 11.59 9.06 -89.69 -0.81 10.78 16 38 H 0.34 13.29 8.55 -89.69 -0.77 12.53 16 39 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.06 2.48 6.98 -2.39 -0.02 2.47 16 41 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 42 H 0.00 0.08 7.78 -2.39 -0.02 0.06 16 43 H 0.26 15.28 8.31 -92.71 -0.77 14.50 16 44 H 0.08 0.85 5.55 -2.39 -0.01 0.84 16 45 H 0.07 0.91 6.67 -2.39 -0.02 0.90 16 46 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 47 H 0.12 2.94 7.89 -2.91 -0.02 2.92 16 48 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 49 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 50 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 51 H 0.13 2.67 8.00 -2.91 -0.02 2.64 16 Total: -1.00 -75.48 403.76 2.81 -72.68 By element: Atomic # 1 Polarization: 40.86 SS G_CDS: -0.64 Total: 40.22 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 5.48 Total: -19.09 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -2.81 Total: -106.76 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.25 Total: -34.13 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.48 2.81 -72.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424095444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.794 kcal (2) G-P(sol) polarization free energy of solvation -75.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds