Wall clock time and date at job start Tue Mar 31 2020 20:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99853 * 2 1 4 4 C 1.38753 * 120.05530 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.93996 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05941 * 0.02562 * 5 4 3 7 7 C 1.38249 * 120.10926 * 359.74854 * 6 5 4 8 8 C 1.38172 * 120.05699 * 0.50513 * 7 6 5 9 9 C 1.50696 * 120.02635 * 179.76900 * 8 7 6 10 10 C 1.52998 * 109.47260 * 264.72371 * 9 8 7 11 11 H 1.08998 * 109.46886 * 305.00084 * 10 9 8 12 12 C 1.52997 * 109.47144 * 185.00291 * 10 9 8 13 13 N 1.46496 * 109.47151 * 64.99984 * 10 9 8 14 14 C 1.46497 * 119.99887 * 60.00443 * 13 10 9 15 15 C 1.34772 * 120.00222 * 240.00147 * 13 10 9 16 16 O 1.21283 * 119.99912 * 359.97438 * 15 13 10 17 17 C 1.50700 * 119.99971 * 180.02562 * 15 13 10 18 18 H 1.09001 * 109.46817 * 319.98961 * 17 15 13 19 19 N 1.46910 * 109.46728 * 199.99907 * 17 15 13 20 20 C 1.52992 * 109.47798 * 79.99728 * 17 15 13 21 21 C 1.52997 * 109.47482 * 185.00026 * 20 17 15 22 22 C 1.50701 * 109.47212 * 179.97438 * 21 20 17 23 23 H 1.07998 * 120.00129 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99861 * 179.97438 * 22 21 20 25 25 N 1.31510 * 119.99913 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99734 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47094 * 90.00289 * 26 24 22 28 28 H 1.48505 * 109.47195 * 210.00171 * 26 24 22 29 29 H 1.48493 * 109.47449 * 330.00136 * 26 24 22 30 30 H 1.09003 * 109.46896 * 60.00208 * 1 2 3 31 31 H 1.09001 * 109.46898 * 179.97438 * 1 2 3 32 32 H 1.08988 * 109.47260 * 300.00169 * 1 2 3 33 33 H 1.07995 * 120.02785 * 359.95988 * 4 3 2 34 34 H 1.08002 * 119.96826 * 179.97438 * 5 4 3 35 35 H 1.08001 * 119.94698 * 179.97438 * 6 5 4 36 36 H 1.08003 * 119.97245 * 180.24744 * 7 6 5 37 37 H 1.09001 * 109.46761 * 144.72364 * 9 8 7 38 38 H 1.09000 * 109.47492 * 24.72704 * 9 8 7 39 39 H 1.08998 * 109.47452 * 300.00356 * 12 10 9 40 40 H 1.09001 * 109.47115 * 59.99870 * 12 10 9 41 41 H 1.09003 * 109.47397 * 179.97438 * 12 10 9 42 42 H 1.08999 * 109.47148 * 269.99866 * 14 13 10 43 43 H 1.09009 * 109.47280 * 29.99507 * 14 13 10 44 44 H 1.09001 * 109.47444 * 149.99353 * 14 13 10 45 45 H 1.00892 * 110.99957 * 299.99600 * 19 17 15 46 46 H 1.00899 * 110.99816 * 63.94833 * 19 17 15 47 47 H 1.09002 * 109.47103 * 64.99779 * 20 17 15 48 48 H 1.08998 * 109.46862 * 305.00591 * 20 17 15 49 49 H 1.09002 * 109.47153 * 59.99783 * 21 20 17 50 50 H 1.09001 * 109.46832 * 299.99974 * 21 20 17 51 51 H 0.97002 * 119.99768 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5171 0.0047 8 6 3.4311 1.2848 -0.0011 9 6 4.2538 0.0222 -0.0018 10 6 4.4262 -0.4734 -1.4390 11 1 3.4468 -0.5926 -1.9022 12 6 5.1535 -1.8194 -1.4305 13 7 5.2113 0.5011 -2.2007 14 6 6.5727 0.8370 -1.7765 15 6 4.6812 1.0885 -3.2917 16 8 3.5543 0.8100 -3.6432 17 6 5.4890 2.0905 -4.0755 18 1 6.0472 2.7253 -3.3873 19 7 4.5871 2.9208 -4.8851 20 6 6.4648 1.3525 -4.9941 21 6 7.3698 2.3664 -5.6969 22 6 8.3314 1.6393 -6.6012 23 1 8.2999 0.5618 -6.6683 24 6 9.2506 2.3497 -7.3438 25 7 9.2886 3.6617 -7.2624 26 14 10.4420 1.4485 -8.4652 27 1 9.8376 1.3015 -9.8137 28 1 11.7048 2.2228 -8.5705 29 1 10.7308 0.1047 -7.9031 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.2128 2.3203 0.0003 34 1 1.3339 4.5114 0.0011 35 1 3.7922 4.6381 0.0005 36 1 5.1344 2.5752 0.0083 37 1 3.7470 -0.7419 0.5877 38 1 5.2326 0.2260 0.4322 39 1 6.1329 -1.7004 -0.9672 40 1 4.5693 -2.5445 -0.8638 41 1 5.2760 -2.1728 -2.4544 42 1 6.5403 1.6778 -1.0836 43 1 7.0221 -0.0242 -1.2819 44 1 7.1687 1.1073 -2.6482 45 1 4.0579 2.3552 -5.5316 46 1 3.9751 3.4678 -4.2983 47 1 5.9053 0.7870 -5.7393 48 1 7.0748 0.6697 -4.4026 49 1 7.9293 2.9318 -4.9517 50 1 6.7597 3.0491 -6.2884 51 1 9.9356 4.1615 -7.7846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424143773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:29 Heat of formation + Delta-G solvation = -59.074101 kcal Electronic energy + Delta-G solvation = -30207.432604 eV Core-core repulsion = 26299.676230 eV Total energy + Delta-G solvation = -3907.756374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.63286 -39.80178 -37.62853 -36.54372 -35.18470 -33.11466 -32.71518 -31.02183 -30.20179 -30.03223 -27.67142 -26.85660 -26.50702 -26.30013 -23.84509 -22.28147 -22.03884 -20.96560 -19.99834 -18.78819 -18.16661 -17.25635 -16.50095 -16.27364 -15.94877 -15.92070 -15.67302 -15.35098 -15.13547 -14.62205 -14.41393 -14.12692 -13.87784 -13.81286 -13.37515 -13.29398 -12.91768 -12.67379 -12.54835 -12.37822 -12.25930 -12.15631 -11.97392 -11.89807 -11.81828 -11.47936 -11.39950 -11.31658 -10.93196 -10.87465 -10.75309 -10.59643 -10.49492 -9.93841 -9.73897 -9.31587 -9.00315 -8.97148 -8.55633 -8.30232 -8.19985 -8.12016 -5.92102 -3.94073 1.19935 1.33501 2.91569 3.09916 3.18228 3.35973 3.42212 3.45065 3.62809 4.51210 4.53188 4.63264 4.71158 4.83152 4.89878 4.93051 5.00993 5.06640 5.10822 5.15276 5.23064 5.24094 5.29270 5.34958 5.43427 5.44464 5.48606 5.54394 5.62598 5.65120 5.70800 5.84638 5.90899 5.93660 6.04823 6.12031 6.23256 6.31833 6.42979 6.47360 6.65397 6.68919 6.75229 7.12499 7.22892 7.44522 7.63897 7.78415 7.86779 7.98709 8.15852 8.43837 8.50832 9.14052 9.68978 11.18774 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.002842 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.176435 B = 9848.124581 C =10387.745032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.132 3.868 4 C -0.207 4.207 5 C -0.086 4.086 6 C -0.154 4.154 7 C -0.076 4.076 8 C -0.104 4.104 9 C -0.080 4.080 10 C 0.140 3.860 11 H 0.100 0.900 12 C -0.161 4.161 13 N -0.606 5.606 14 C 0.065 3.935 15 C 0.488 3.512 16 O -0.554 6.554 17 C 0.079 3.921 18 H 0.095 0.905 19 N -0.807 5.807 20 C -0.096 4.096 21 C 0.033 3.967 22 C -0.521 4.521 23 H 0.051 0.949 24 C 0.058 3.942 25 N -0.892 5.892 26 Si 0.888 3.112 27 H -0.281 1.281 28 H -0.287 1.287 29 H -0.275 1.275 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.346 0.654 46 H 0.332 0.668 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.012 0.988 50 H 0.034 0.966 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -5.330 20.638 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.086 3.914 4 C -0.226 4.226 5 C -0.104 4.104 6 C -0.172 4.172 7 C -0.094 4.094 8 C -0.105 4.105 9 C -0.118 4.118 10 C 0.036 3.964 11 H 0.118 0.882 12 C -0.219 4.219 13 N -0.339 5.339 14 C -0.078 4.078 15 C 0.275 3.725 16 O -0.432 6.432 17 C -0.036 4.036 18 H 0.113 0.887 19 N -0.334 5.334 20 C -0.135 4.135 21 C -0.005 4.005 22 C -0.560 4.560 23 H 0.070 0.930 24 C -0.143 4.143 25 N -0.532 5.532 26 Si 0.716 3.284 27 H -0.208 1.208 28 H -0.213 1.213 29 H -0.200 1.200 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.160 0.840 46 H 0.144 0.856 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.031 0.969 50 H 0.053 0.947 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.566 -5.163 20.092 25.348 hybrid contribution -0.316 -0.783 -0.126 0.854 sum -14.882 -5.946 19.967 25.603 Atomic orbital electron populations 1.23025 0.78651 1.03804 1.01183 1.86054 1.21098 1.26880 1.88629 1.18811 0.91781 0.84174 0.96594 1.21177 0.99801 0.92502 1.09112 1.20897 0.94740 0.96841 0.97909 1.21054 0.93920 0.98468 1.03800 1.20913 0.99801 0.91098 0.97580 1.19112 0.90323 0.95816 1.05253 1.20816 0.99165 0.94763 0.97029 1.20988 0.96828 0.87730 0.90846 0.88187 1.22131 1.00762 0.96307 1.02664 1.47944 1.15353 1.42762 1.27880 1.22004 0.83037 1.00799 1.01955 1.22635 0.87643 0.82203 0.80014 1.90616 1.19990 1.64111 1.68438 1.21812 0.94400 0.92511 0.94902 0.88677 1.59022 1.26414 1.27559 1.20448 1.21691 0.95926 0.99042 0.96809 1.19003 0.92953 0.93508 0.94996 1.21284 1.16734 0.93108 1.24868 0.93030 1.24985 0.97544 0.94789 0.96982 1.69975 1.36283 1.05529 1.41392 0.86664 0.80684 0.79720 0.81317 1.20753 1.21304 1.20012 0.92673 0.88339 0.92908 0.85791 0.86035 0.85896 0.85611 0.89849 0.90806 0.92161 0.91624 0.92004 0.92931 0.91019 0.89261 0.84026 0.85604 0.92972 0.92679 0.96932 0.94720 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.59 9.63 -19.43 -0.19 -3.78 16 3 C 0.13 1.61 6.66 -39.22 -0.26 1.35 16 4 C -0.21 -2.29 9.04 -39.43 -0.36 -2.64 16 5 C -0.09 -0.91 10.04 -39.60 -0.40 -1.30 16 6 C -0.15 -1.67 10.04 -39.56 -0.40 -2.07 16 7 C -0.08 -0.86 9.55 -39.60 -0.38 -1.24 16 8 C -0.10 -1.25 4.90 -104.47 -0.51 -1.76 16 9 C -0.08 -0.84 4.50 -27.89 -0.13 -0.96 16 10 C 0.14 1.72 2.63 -67.93 -0.18 1.54 16 11 H 0.10 1.54 6.90 -51.93 -0.36 1.18 16 12 C -0.16 -1.66 9.17 37.16 0.34 -1.32 16 13 N -0.61 -8.14 2.36 -173.94 -0.41 -8.55 16 14 C 0.06 0.73 8.81 59.85 0.53 1.26 16 15 C 0.49 8.13 6.92 -10.99 -0.08 8.06 16 16 O -0.55 -10.79 15.58 5.55 0.09 -10.71 16 17 C 0.08 1.39 2.31 -68.86 -0.16 1.23 16 18 H 0.10 1.59 7.21 -51.93 -0.37 1.22 16 19 N -0.81 -14.32 8.44 -5.65 -0.05 -14.37 16 20 C -0.10 -1.98 4.45 -26.74 -0.12 -2.10 16 21 C 0.03 0.83 4.86 -27.88 -0.14 0.70 16 22 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 23 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 24 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 25 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 26 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 30 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.33 7.66 -51.94 -0.40 -0.07 16 33 H 0.12 1.11 6.30 -52.49 -0.33 0.78 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.26 6.53 -52.48 -0.34 0.92 16 37 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 38 H 0.07 0.67 7.42 -51.93 -0.39 0.29 16 39 H 0.06 0.54 6.66 -51.93 -0.35 0.20 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.51 6.61 -51.93 -0.34 0.17 16 43 H 0.07 0.66 6.43 -51.92 -0.33 0.33 16 44 H 0.09 1.16 4.83 -51.93 -0.25 0.91 16 45 H 0.35 6.27 8.58 -39.30 -0.34 5.93 16 46 H 0.33 5.29 9.06 -39.29 -0.36 4.93 16 47 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.05 1.06 6.43 -51.93 -0.33 0.73 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 51 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 405.02 15.07 6.10 6.10 Total: -1.00 -33.82 405.02 -8.58 -42.40 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -8.19 Total: 9.89 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.65 Total: -11.57 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.28 Total: -49.12 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.10 Total: -14.48 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.82 -8.58 -42.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424143773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.672 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds