Wall clock time and date at job start Tue Mar 31 2020 20:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99853 * 2 1 4 4 C 1.38753 * 120.05530 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.93996 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05941 * 0.02562 * 5 4 3 7 7 C 1.38249 * 120.10926 * 359.74854 * 6 5 4 8 8 C 1.38172 * 120.05699 * 0.50513 * 7 6 5 9 9 C 1.50696 * 120.02635 * 179.76900 * 8 7 6 10 10 C 1.52998 * 109.47260 * 264.72371 * 9 8 7 11 11 H 1.08998 * 109.46886 * 305.00084 * 10 9 8 12 12 C 1.52997 * 109.47144 * 185.00291 * 10 9 8 13 13 N 1.46496 * 109.47151 * 64.99984 * 10 9 8 14 14 C 1.46497 * 119.99887 * 60.00443 * 13 10 9 15 15 C 1.34772 * 120.00222 * 240.00147 * 13 10 9 16 16 O 1.21283 * 119.99912 * 359.97438 * 15 13 10 17 17 C 1.50700 * 119.99971 * 180.02562 * 15 13 10 18 18 H 1.09001 * 109.46817 * 319.98961 * 17 15 13 19 19 N 1.46910 * 109.46728 * 199.99907 * 17 15 13 20 20 C 1.52992 * 109.47798 * 79.99728 * 17 15 13 21 21 C 1.52997 * 109.47482 * 185.00026 * 20 17 15 22 22 C 1.50701 * 109.47212 * 179.97438 * 21 20 17 23 23 H 1.07998 * 120.00129 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99861 * 179.97438 * 22 21 20 25 25 N 1.31510 * 119.99913 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99734 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47094 * 90.00289 * 26 24 22 28 28 H 1.48505 * 109.47195 * 210.00171 * 26 24 22 29 29 H 1.48493 * 109.47449 * 330.00136 * 26 24 22 30 30 H 1.09003 * 109.46896 * 60.00208 * 1 2 3 31 31 H 1.09001 * 109.46898 * 179.97438 * 1 2 3 32 32 H 1.08988 * 109.47260 * 300.00169 * 1 2 3 33 33 H 1.07995 * 120.02785 * 359.95988 * 4 3 2 34 34 H 1.08002 * 119.96826 * 179.97438 * 5 4 3 35 35 H 1.08001 * 119.94698 * 179.97438 * 6 5 4 36 36 H 1.08003 * 119.97245 * 180.24744 * 7 6 5 37 37 H 1.09001 * 109.46761 * 144.72364 * 9 8 7 38 38 H 1.09000 * 109.47492 * 24.72704 * 9 8 7 39 39 H 1.08998 * 109.47452 * 300.00356 * 12 10 9 40 40 H 1.09001 * 109.47115 * 59.99870 * 12 10 9 41 41 H 1.09003 * 109.47397 * 179.97438 * 12 10 9 42 42 H 1.08999 * 109.47148 * 269.99866 * 14 13 10 43 43 H 1.09009 * 109.47280 * 29.99507 * 14 13 10 44 44 H 1.09001 * 109.47444 * 149.99353 * 14 13 10 45 45 H 1.00892 * 110.99957 * 299.99600 * 19 17 15 46 46 H 1.00899 * 110.99816 * 63.94833 * 19 17 15 47 47 H 1.09002 * 109.47103 * 64.99779 * 20 17 15 48 48 H 1.08998 * 109.46862 * 305.00591 * 20 17 15 49 49 H 1.09002 * 109.47153 * 59.99783 * 21 20 17 50 50 H 1.09001 * 109.46832 * 299.99974 * 21 20 17 51 51 H 0.97002 * 119.99768 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5171 0.0047 8 6 3.4311 1.2848 -0.0011 9 6 4.2538 0.0222 -0.0018 10 6 4.4262 -0.4734 -1.4390 11 1 3.4468 -0.5926 -1.9022 12 6 5.1535 -1.8194 -1.4305 13 7 5.2113 0.5011 -2.2007 14 6 6.5727 0.8370 -1.7765 15 6 4.6812 1.0885 -3.2917 16 8 3.5543 0.8100 -3.6432 17 6 5.4890 2.0905 -4.0755 18 1 6.0472 2.7253 -3.3873 19 7 4.5871 2.9208 -4.8851 20 6 6.4648 1.3525 -4.9941 21 6 7.3698 2.3664 -5.6969 22 6 8.3314 1.6393 -6.6012 23 1 8.2999 0.5618 -6.6683 24 6 9.2506 2.3497 -7.3438 25 7 9.2886 3.6617 -7.2624 26 14 10.4420 1.4485 -8.4652 27 1 9.8376 1.3015 -9.8137 28 1 11.7048 2.2228 -8.5705 29 1 10.7308 0.1047 -7.9031 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.2128 2.3203 0.0003 34 1 1.3339 4.5114 0.0011 35 1 3.7922 4.6381 0.0005 36 1 5.1344 2.5752 0.0083 37 1 3.7470 -0.7419 0.5877 38 1 5.2326 0.2260 0.4322 39 1 6.1329 -1.7004 -0.9672 40 1 4.5693 -2.5445 -0.8638 41 1 5.2760 -2.1728 -2.4544 42 1 6.5403 1.6778 -1.0836 43 1 7.0221 -0.0242 -1.2819 44 1 7.1687 1.1073 -2.6482 45 1 4.0579 2.3552 -5.5316 46 1 3.9751 3.4678 -4.2983 47 1 5.9053 0.7870 -5.7393 48 1 7.0748 0.6697 -4.4026 49 1 7.9293 2.9318 -4.9517 50 1 6.7597 3.0491 -6.2884 51 1 9.9356 4.1615 -7.7846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424143773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:28 Heat of formation + Delta-G solvation = -80.423542 kcal Electronic energy + Delta-G solvation = -30208.358385 eV Core-core repulsion = 26299.676230 eV Total energy + Delta-G solvation = -3908.682155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.60148 -40.88295 -38.47481 -37.61292 -36.79119 -34.84373 -33.99134 -31.95560 -31.86602 -30.98563 -28.33980 -28.15178 -27.83827 -27.24957 -25.56757 -23.14053 -23.04120 -22.35742 -21.40059 -19.96467 -18.95190 -18.62491 -18.26086 -17.38046 -17.02431 -16.85438 -16.70161 -16.59245 -16.39935 -16.21152 -15.40953 -15.38282 -14.89549 -14.68852 -14.59591 -14.40725 -14.26696 -13.94377 -13.68017 -13.49337 -13.45176 -13.28674 -13.17922 -12.93391 -12.92860 -12.76472 -12.61226 -12.48174 -12.20320 -12.18709 -12.04552 -11.82107 -11.67825 -11.60811 -11.52552 -11.19214 -10.93156 -10.47604 -9.86963 -9.58739 -9.57946 -9.04260 -8.12382 -6.22507 0.37724 0.50534 1.42571 1.43815 1.54106 1.59441 2.06485 2.38929 2.45664 2.80203 3.20628 3.51093 3.68491 3.78634 3.85703 4.00966 4.09254 4.13192 4.22588 4.26488 4.31980 4.33182 4.35124 4.35332 4.44014 4.51212 4.64395 4.67238 4.68075 4.73347 4.77040 4.82844 4.88727 4.93089 5.02148 5.07555 5.20331 5.26843 5.29672 5.41120 5.49773 5.58701 5.60057 5.70638 5.85561 5.87466 5.99925 6.09370 6.31805 6.40102 6.45344 6.49070 6.95731 7.17198 7.45462 8.98811 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.002842 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.176435 B = 9848.124581 C =10387.745032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.330 6.330 3 C 0.113 3.887 4 C -0.218 4.218 5 C -0.093 4.093 6 C -0.166 4.166 7 C -0.086 4.086 8 C -0.124 4.124 9 C -0.071 4.071 10 C 0.142 3.858 11 H 0.066 0.934 12 C -0.155 4.155 13 N -0.595 5.595 14 C 0.058 3.942 15 C 0.489 3.511 16 O -0.587 6.587 17 C 0.089 3.911 18 H 0.105 0.895 19 N -0.817 5.817 20 C -0.081 4.081 21 C 0.043 3.957 22 C -0.543 4.543 23 H 0.054 0.946 24 C 0.003 3.997 25 N -0.929 5.929 26 Si 0.958 3.042 27 H -0.278 1.278 28 H -0.281 1.281 29 H -0.263 1.263 30 H 0.050 0.950 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.342 0.658 46 H 0.343 0.657 47 H 0.036 0.964 48 H 0.069 0.931 49 H -0.004 1.004 50 H 0.003 0.997 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.137 -6.365 22.031 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.244 6.244 3 C 0.067 3.933 4 C -0.237 4.237 5 C -0.111 4.111 6 C -0.184 4.184 7 C -0.104 4.104 8 C -0.124 4.124 9 C -0.109 4.109 10 C 0.038 3.962 11 H 0.084 0.916 12 C -0.213 4.213 13 N -0.327 5.327 14 C -0.084 4.084 15 C 0.276 3.724 16 O -0.468 6.468 17 C -0.027 4.027 18 H 0.123 0.877 19 N -0.345 5.345 20 C -0.119 4.119 21 C 0.006 3.994 22 C -0.581 4.581 23 H 0.073 0.927 24 C -0.195 4.195 25 N -0.569 5.569 26 Si 0.783 3.217 27 H -0.204 1.204 28 H -0.207 1.207 29 H -0.187 1.187 30 H 0.069 0.931 31 H 0.135 0.865 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.090 0.910 45 H 0.155 0.845 46 H 0.156 0.844 47 H 0.055 0.945 48 H 0.088 0.912 49 H 0.014 0.986 50 H 0.021 0.979 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.880 -6.216 21.528 26.358 hybrid contribution -0.583 -0.437 -0.518 0.894 sum -14.463 -6.653 21.010 26.360 Atomic orbital electron populations 1.23253 0.77062 1.05288 1.01682 1.86020 1.22857 1.26845 1.88653 1.19102 0.92360 0.84769 0.97020 1.21460 1.00777 0.92502 1.08969 1.21220 0.95062 0.97532 0.97314 1.21344 0.94295 0.99126 1.03626 1.21136 1.00533 0.91126 0.97572 1.19380 0.90683 0.96587 1.05770 1.20764 1.00081 0.94399 0.95612 1.21022 0.95296 0.88474 0.91368 0.91565 1.22098 1.01839 0.95271 1.02082 1.47954 1.16098 1.41903 1.26740 1.22209 0.81434 1.02933 1.01841 1.22275 0.87054 0.82171 0.80868 1.90605 1.21309 1.65178 1.69659 1.21593 0.93958 0.92682 0.94463 0.87679 1.59012 1.26731 1.27854 1.20943 1.21416 0.95721 0.97947 0.96833 1.18789 0.92713 0.93740 0.94159 1.21714 1.17377 0.93505 1.25468 0.92733 1.25878 0.99458 0.95584 0.98562 1.70104 1.37231 1.07151 1.42436 0.85557 0.78232 0.78866 0.79031 1.20351 1.20663 1.18725 0.93087 0.86459 0.91423 0.84281 0.84042 0.84443 0.84437 0.89236 0.88808 0.90166 0.89944 0.93768 0.90782 0.88305 0.90978 0.84464 0.84448 0.94467 0.91212 0.98568 0.97864 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -7.43 9.63 -92.46 -0.89 -8.32 16 3 C 0.11 2.71 6.66 22.51 0.15 2.86 16 4 C -0.22 -4.68 9.04 22.37 0.20 -4.48 16 5 C -0.09 -1.88 10.04 22.25 0.22 -1.65 16 6 C -0.17 -3.41 10.04 22.28 0.22 -3.18 16 7 C -0.09 -1.83 9.55 22.26 0.21 -1.62 16 8 C -0.12 -2.84 4.90 -19.77 -0.10 -2.93 16 9 C -0.07 -1.36 4.50 29.85 0.13 -1.23 16 10 C 0.14 3.32 2.63 44.99 0.12 3.43 16 11 H 0.07 2.05 6.90 -2.39 -0.02 2.03 16 12 C -0.16 -2.89 9.17 71.98 0.66 -2.23 16 13 N -0.60 -15.27 2.36 -822.61 -1.94 -17.21 16 14 C 0.06 1.16 8.81 127.77 1.13 2.29 16 15 C 0.49 16.25 6.92 87.66 0.61 16.85 16 16 O -0.59 -23.26 15.58 -3.04 -0.05 -23.31 16 17 C 0.09 3.11 2.31 44.16 0.10 3.21 16 18 H 0.11 3.46 7.21 -2.39 -0.02 3.44 16 19 N -0.82 -29.57 8.44 -171.79 -1.45 -31.02 16 20 C -0.08 -3.35 4.45 30.59 0.14 -3.22 16 21 C 0.04 2.26 4.86 29.85 0.15 2.40 16 22 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 23 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 24 C 0.00 0.18 5.46 84.66 0.46 0.64 16 25 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 26 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 28 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 29 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 30 H 0.05 0.78 7.66 -2.39 -0.02 0.76 16 31 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 33 H 0.14 2.37 6.30 -2.91 -0.02 2.36 16 34 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.14 2.46 6.53 -2.91 -0.02 2.44 16 37 H 0.09 1.62 7.69 -2.39 -0.02 1.60 16 38 H 0.09 1.41 7.42 -2.39 -0.02 1.39 16 39 H 0.08 1.17 6.66 -2.39 -0.02 1.16 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.21 6.61 -2.39 -0.02 1.20 16 43 H 0.10 1.48 6.43 -2.38 -0.02 1.46 16 44 H 0.07 1.75 4.83 -2.39 -0.01 1.74 16 45 H 0.34 12.80 8.58 -89.70 -0.77 12.03 16 46 H 0.34 11.02 9.06 -89.69 -0.81 10.21 16 47 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.07 2.66 6.43 -2.39 -0.02 2.65 16 49 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 50 H 0.00 0.17 7.75 -2.39 -0.02 0.15 16 51 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -74.02 405.02 3.09 -70.93 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: -0.63 Total: 36.91 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 5.75 Total: -18.11 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -3.11 Total: -104.62 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.94 Total: -31.63 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -74.02 3.09 -70.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424143773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.498 kcal (2) G-P(sol) polarization free energy of solvation -74.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds