Wall clock time and date at job start Tue Mar 31 2020 20:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38723 * 120.05884 * 359.72201 * 3 2 1 5 5 C 1.38145 * 119.94323 * 179.77076 * 4 3 2 6 6 C 1.38260 * 120.05692 * 0.50972 * 5 4 3 7 7 C 1.50706 * 119.94706 * 179.76915 * 6 5 4 8 8 C 1.52995 * 109.46738 * 269.97472 * 7 6 5 9 9 H 1.08993 * 109.47346 * 304.99835 * 8 7 6 10 10 C 1.53006 * 109.47331 * 65.00152 * 8 7 6 11 11 C 1.53002 * 109.46849 * 184.99797 * 8 7 6 12 12 N 1.46504 * 109.46964 * 175.00289 * 11 8 7 13 13 C 1.34778 * 119.99811 * 180.02562 * 12 11 8 14 14 O 1.21280 * 120.00098 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00039 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.47265 * 39.99752 * 15 13 12 17 17 N 1.46897 * 109.47387 * 159.99883 * 15 13 12 18 18 C 1.53008 * 109.47235 * 279.99714 * 15 13 12 19 19 C 1.52996 * 109.47433 * 174.99767 * 18 15 13 20 20 C 1.50699 * 109.47230 * 180.02562 * 19 18 15 21 21 H 1.08000 * 119.99512 * 359.97438 * 20 19 18 22 22 C 1.37870 * 119.99991 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00369 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00187 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47387 * 59.99265 * 24 22 20 26 26 H 1.48493 * 109.47425 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46925 * 299.99791 * 24 22 20 28 28 C 1.38268 * 120.10972 * 359.74026 * 6 5 4 29 29 C 1.38139 * 120.05510 * 0.02562 * 28 6 5 30 30 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 31 31 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 33 33 H 1.08001 * 120.02769 * 0.02562 * 4 3 2 34 34 H 1.08006 * 119.97076 * 180.25587 * 5 4 3 35 35 H 1.09001 * 109.46891 * 29.97509 * 7 6 5 36 36 H 1.08994 * 109.47121 * 149.97471 * 7 6 5 37 37 H 1.08998 * 109.46742 * 299.99863 * 10 8 7 38 38 H 1.08998 * 109.46824 * 59.99252 * 10 8 7 39 39 H 1.08999 * 109.47127 * 179.97438 * 10 8 7 40 40 H 1.09002 * 109.47400 * 294.99694 * 11 8 7 41 41 H 1.09003 * 109.47486 * 55.00354 * 11 8 7 42 42 H 0.96997 * 120.00124 * 0.02562 * 12 11 8 43 43 H 1.00901 * 111.00313 * 59.99467 * 17 15 13 44 44 H 1.00900 * 111.00221 * 183.95191 * 17 15 13 45 45 H 1.09000 * 109.46800 * 295.00521 * 18 15 13 46 46 H 1.09000 * 109.46498 * 54.99786 * 18 15 13 47 47 H 1.09000 * 109.47163 * 300.00668 * 19 18 15 48 48 H 1.09002 * 109.46663 * 60.00032 * 19 18 15 49 49 H 0.96998 * 120.00471 * 179.97438 * 23 22 20 50 50 H 1.08008 * 119.97007 * 179.97438 * 28 6 5 51 51 H 1.08001 * 120.02451 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2915 2.3751 -0.0058 5 6 1.9210 3.6048 -0.0010 6 6 3.3018 3.6758 -0.0011 7 6 3.9860 5.0186 -0.0011 8 6 4.2180 5.4727 -1.4436 9 1 4.7709 4.7032 -1.9822 10 6 2.8696 5.7054 -2.1282 11 6 5.0223 6.7743 -1.4454 12 7 5.3469 7.1458 -2.8249 13 6 6.0560 8.2649 -3.0723 14 8 6.4249 8.9647 -2.1530 15 6 6.3904 8.6468 -4.4912 16 1 5.5328 8.4459 -5.1332 17 7 6.7208 10.0770 -4.5485 18 6 7.5898 7.8267 -4.9709 19 6 7.8517 8.1227 -6.4489 20 6 9.0326 7.3145 -6.9215 21 1 9.5453 6.6560 -6.2360 22 6 9.4591 7.4166 -8.2286 23 7 8.8351 8.2189 -9.0632 24 14 10.9225 6.4144 -8.8146 25 1 10.6323 4.9681 -8.6438 26 1 11.1775 6.7027 -10.2488 27 1 12.1216 6.7761 -8.0167 28 6 4.0560 2.5170 -0.0005 29 6 3.4313 1.2849 -0.0004 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2129 2.3201 -0.0099 34 1 1.3341 4.5114 -0.0014 35 1 3.3578 5.7465 0.5124 36 1 4.9437 4.9384 0.5131 37 1 2.2967 4.7782 -2.1268 38 1 2.3167 6.4749 -1.5894 39 1 3.0350 6.0293 -3.1557 40 1 4.4321 7.5667 -0.9851 41 1 5.9439 6.6328 -0.8808 42 1 5.0515 6.5863 -3.5601 43 1 7.5133 10.2889 -3.9610 44 1 6.8861 10.3721 -5.4991 45 1 8.4697 8.0934 -4.3854 46 1 7.3777 6.7650 -4.8449 47 1 6.9717 7.8561 -7.0343 48 1 8.0638 9.1845 -6.5747 49 1 9.1353 8.2910 -9.9827 50 1 5.1345 2.5751 -0.0009 51 1 4.0209 0.3801 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424178923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:31 Heat of formation + Delta-G solvation = -80.874666 kcal Electronic energy + Delta-G solvation = -27744.457419 eV Core-core repulsion = 23835.755702 eV Total energy + Delta-G solvation = -3908.701717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.56010 -39.65629 -38.43086 -36.53431 -35.36243 -33.51719 -32.83384 -31.43614 -30.64678 -29.86885 -28.02067 -27.45283 -26.56186 -25.34787 -23.51563 -22.97577 -21.68667 -20.70213 -20.44260 -19.60256 -18.51084 -17.29009 -16.61766 -16.44097 -16.18829 -16.11728 -15.48763 -15.39482 -14.82560 -14.66002 -14.48839 -14.32345 -14.06116 -14.00149 -13.90523 -13.68049 -13.17360 -13.00500 -12.80945 -12.75891 -12.44023 -12.30096 -12.12722 -11.95234 -11.65554 -11.64312 -11.21284 -11.09838 -11.07461 -11.00996 -10.91996 -10.89772 -10.70243 -9.97717 -9.89313 -9.31919 -9.28406 -9.19469 -8.92044 -8.43377 -8.40021 -8.16181 -6.08043 -4.11226 1.01100 1.07795 2.89544 2.98888 3.28005 3.28787 3.33594 3.36091 3.46676 4.37463 4.39736 4.40623 4.51377 4.61328 4.70796 4.71812 4.79064 4.88319 5.01745 5.04329 5.05857 5.12901 5.21746 5.28041 5.28343 5.33146 5.41404 5.51331 5.60212 5.64761 5.66384 5.74030 5.75130 5.79860 5.95669 5.99835 6.03439 6.06573 6.30187 6.35006 6.43203 6.52986 6.59046 6.88649 7.02303 7.45948 7.52584 7.62471 7.74674 7.88876 7.92907 8.31653 8.51881 8.94500 9.53553 11.02764 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.001960 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.687309 B =14282.454439 C =15878.786779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.207 4.207 5 C -0.074 4.074 6 C -0.113 4.113 7 C -0.070 4.070 8 C -0.098 4.098 9 H 0.080 0.920 10 C -0.151 4.151 11 C 0.126 3.874 12 N -0.734 5.734 13 C 0.525 3.475 14 O -0.540 6.540 15 C 0.074 3.926 16 H 0.095 0.905 17 N -0.831 5.831 18 C -0.137 4.137 19 C 0.024 3.976 20 C -0.524 4.524 21 H 0.054 0.946 22 C 0.058 3.942 23 N -0.893 5.893 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C -0.076 4.076 29 C -0.149 4.149 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.401 0.599 43 H 0.345 0.655 44 H 0.354 0.646 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.262 0.738 50 H 0.130 0.870 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.302 -12.838 19.407 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.075 3.925 4 C -0.226 4.226 5 C -0.092 4.092 6 C -0.113 4.113 7 C -0.108 4.108 8 C -0.117 4.117 9 H 0.098 0.902 10 C -0.208 4.208 11 C 0.002 3.998 12 N -0.387 5.387 13 C 0.311 3.689 14 O -0.416 6.416 15 C -0.041 4.041 16 H 0.113 0.887 17 N -0.363 5.363 18 C -0.177 4.177 19 C -0.013 4.013 20 C -0.562 4.562 21 H 0.072 0.928 22 C -0.143 4.143 23 N -0.532 5.532 24 Si 0.721 3.279 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.094 4.094 29 C -0.168 4.168 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.235 0.765 43 H 0.158 0.842 44 H 0.169 0.831 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.072 0.928 50 H 0.148 0.852 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.689 -12.319 20.195 30.147 hybrid contribution 1.267 -1.135 -1.225 2.096 sum -17.423 -13.454 18.970 29.059 Atomic orbital electron populations 1.23050 0.78397 1.03943 1.01358 1.86072 1.21388 1.27076 1.88797 1.19052 0.92419 0.84129 0.96896 1.21220 0.99960 0.92396 1.09035 1.20859 0.94013 0.96954 0.97414 1.19743 0.93489 0.95116 1.02951 1.20521 1.00796 0.93293 0.96154 1.21360 0.97053 0.96916 0.96378 0.90151 1.21934 0.96390 1.01855 1.00658 1.21322 0.99040 0.95720 0.83731 1.46004 1.57325 1.26716 1.08675 1.20875 0.76485 0.79661 0.91830 1.90628 1.52745 1.51573 1.46677 1.21471 1.00152 0.90571 0.91891 0.88676 1.58741 1.47233 1.14267 1.16049 1.22376 0.95377 0.98869 1.01060 1.19101 0.97025 0.97104 0.88064 1.21144 1.14207 1.25314 0.95573 0.92776 1.25013 0.96964 0.95478 0.96876 1.69938 1.40650 1.37437 1.05173 0.86640 0.83012 0.80597 0.77661 1.20219 1.21227 1.20231 1.20912 1.00001 0.90963 0.97534 1.20439 0.91368 0.98760 1.06232 0.92601 0.88257 0.92696 0.85611 0.85738 0.90664 0.90551 0.92071 0.92492 0.92366 0.91656 0.91702 0.76454 0.84163 0.83109 0.92711 0.92566 0.96344 0.96396 0.92832 0.85208 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.81 10.50 -19.44 -0.20 -3.02 16 3 C 0.12 1.09 6.69 -39.22 -0.26 0.83 16 4 C -0.21 -1.63 9.04 -39.44 -0.36 -1.98 16 5 C -0.07 -0.57 7.95 -39.61 -0.32 -0.88 16 6 C -0.11 -0.89 4.71 -104.60 -0.49 -1.39 16 7 C -0.07 -0.50 4.84 -27.88 -0.13 -0.64 16 8 C -0.10 -0.80 2.41 -90.62 -0.22 -1.02 16 9 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 10 C -0.15 -1.19 8.63 37.16 0.32 -0.87 16 11 C 0.13 1.35 5.06 -4.04 -0.02 1.33 16 12 N -0.73 -9.30 5.28 -60.29 -0.32 -9.62 16 13 C 0.52 8.70 7.08 -10.99 -0.08 8.62 16 14 O -0.54 -10.65 16.25 5.56 0.09 -10.56 16 15 C 0.07 1.27 3.21 -68.86 -0.22 1.05 16 16 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 17 N -0.83 -14.51 8.94 -5.65 -0.05 -14.56 16 18 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 19 C 0.02 0.59 4.74 -27.89 -0.13 0.46 16 20 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 21 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 24 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C -0.08 -0.62 9.69 -39.61 -0.38 -1.01 16 29 C -0.15 -1.32 9.99 -39.44 -0.39 -1.72 16 30 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.22 7.67 -51.93 -0.40 -0.18 16 33 H 0.13 0.74 6.30 -52.49 -0.33 0.41 16 34 H 0.12 0.76 8.04 -52.48 -0.42 0.34 16 35 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.06 0.47 6.27 -51.93 -0.33 0.15 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.48 7.18 -51.93 -0.37 0.11 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.40 4.37 7.65 -40.82 -0.31 4.06 16 43 H 0.35 6.12 8.58 -39.29 -0.34 5.79 16 44 H 0.35 6.18 7.55 -39.29 -0.30 5.88 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 49 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 50 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 51 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 413.69 15.07 6.23 6.23 Total: -1.00 -32.86 413.69 -9.35 -42.21 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -8.58 Total: 10.40 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.24 Total: -12.08 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.37 Total: -49.49 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.11 Total: -13.58 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.86 -9.35 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424178923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.665 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds