Wall clock time and date at job start Tue Mar 31 2020 20:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38723 * 120.05884 * 359.72201 * 3 2 1 5 5 C 1.38145 * 119.94323 * 179.77076 * 4 3 2 6 6 C 1.38260 * 120.05692 * 0.50972 * 5 4 3 7 7 C 1.50706 * 119.94706 * 179.76915 * 6 5 4 8 8 C 1.52995 * 109.46738 * 269.97472 * 7 6 5 9 9 H 1.08993 * 109.47346 * 304.99835 * 8 7 6 10 10 C 1.53006 * 109.47331 * 65.00152 * 8 7 6 11 11 C 1.53002 * 109.46849 * 184.99797 * 8 7 6 12 12 N 1.46504 * 109.46964 * 175.00289 * 11 8 7 13 13 C 1.34778 * 119.99811 * 180.02562 * 12 11 8 14 14 O 1.21280 * 120.00098 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00039 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.47265 * 39.99752 * 15 13 12 17 17 N 1.46897 * 109.47387 * 159.99883 * 15 13 12 18 18 C 1.53008 * 109.47235 * 279.99714 * 15 13 12 19 19 C 1.52996 * 109.47433 * 174.99767 * 18 15 13 20 20 C 1.50699 * 109.47230 * 180.02562 * 19 18 15 21 21 H 1.08000 * 119.99512 * 359.97438 * 20 19 18 22 22 C 1.37870 * 119.99991 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00369 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00187 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47387 * 59.99265 * 24 22 20 26 26 H 1.48493 * 109.47425 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46925 * 299.99791 * 24 22 20 28 28 C 1.38268 * 120.10972 * 359.74026 * 6 5 4 29 29 C 1.38139 * 120.05510 * 0.02562 * 28 6 5 30 30 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 31 31 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 33 33 H 1.08001 * 120.02769 * 0.02562 * 4 3 2 34 34 H 1.08006 * 119.97076 * 180.25587 * 5 4 3 35 35 H 1.09001 * 109.46891 * 29.97509 * 7 6 5 36 36 H 1.08994 * 109.47121 * 149.97471 * 7 6 5 37 37 H 1.08998 * 109.46742 * 299.99863 * 10 8 7 38 38 H 1.08998 * 109.46824 * 59.99252 * 10 8 7 39 39 H 1.08999 * 109.47127 * 179.97438 * 10 8 7 40 40 H 1.09002 * 109.47400 * 294.99694 * 11 8 7 41 41 H 1.09003 * 109.47486 * 55.00354 * 11 8 7 42 42 H 0.96997 * 120.00124 * 0.02562 * 12 11 8 43 43 H 1.00901 * 111.00313 * 59.99467 * 17 15 13 44 44 H 1.00900 * 111.00221 * 183.95191 * 17 15 13 45 45 H 1.09000 * 109.46800 * 295.00521 * 18 15 13 46 46 H 1.09000 * 109.46498 * 54.99786 * 18 15 13 47 47 H 1.09000 * 109.47163 * 300.00668 * 19 18 15 48 48 H 1.09002 * 109.46663 * 60.00032 * 19 18 15 49 49 H 0.96998 * 120.00471 * 179.97438 * 23 22 20 50 50 H 1.08008 * 119.97007 * 179.97438 * 28 6 5 51 51 H 1.08001 * 120.02451 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2915 2.3751 -0.0058 5 6 1.9210 3.6048 -0.0010 6 6 3.3018 3.6758 -0.0011 7 6 3.9860 5.0186 -0.0011 8 6 4.2180 5.4727 -1.4436 9 1 4.7709 4.7032 -1.9822 10 6 2.8696 5.7054 -2.1282 11 6 5.0223 6.7743 -1.4454 12 7 5.3469 7.1458 -2.8249 13 6 6.0560 8.2649 -3.0723 14 8 6.4249 8.9647 -2.1530 15 6 6.3904 8.6468 -4.4912 16 1 5.5328 8.4459 -5.1332 17 7 6.7208 10.0770 -4.5485 18 6 7.5898 7.8267 -4.9709 19 6 7.8517 8.1227 -6.4489 20 6 9.0326 7.3145 -6.9215 21 1 9.5453 6.6560 -6.2360 22 6 9.4591 7.4166 -8.2286 23 7 8.8351 8.2189 -9.0632 24 14 10.9225 6.4144 -8.8146 25 1 10.6323 4.9681 -8.6438 26 1 11.1775 6.7027 -10.2488 27 1 12.1216 6.7761 -8.0167 28 6 4.0560 2.5170 -0.0005 29 6 3.4313 1.2849 -0.0004 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2129 2.3201 -0.0099 34 1 1.3341 4.5114 -0.0014 35 1 3.3578 5.7465 0.5124 36 1 4.9437 4.9384 0.5131 37 1 2.2967 4.7782 -2.1268 38 1 2.3167 6.4749 -1.5894 39 1 3.0350 6.0293 -3.1557 40 1 4.4321 7.5667 -0.9851 41 1 5.9439 6.6328 -0.8808 42 1 5.0515 6.5863 -3.5601 43 1 7.5133 10.2889 -3.9610 44 1 6.8861 10.3721 -5.4991 45 1 8.4697 8.0934 -4.3854 46 1 7.3777 6.7650 -4.8449 47 1 6.9717 7.8561 -7.0343 48 1 8.0638 9.1845 -6.5747 49 1 9.1353 8.2910 -9.9827 50 1 5.1345 2.5751 -0.0009 51 1 4.0209 0.3801 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424178923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:30 Heat of formation + Delta-G solvation = -102.139672 kcal Electronic energy + Delta-G solvation = -27745.379539 eV Core-core repulsion = 23835.755702 eV Total energy + Delta-G solvation = -3909.623837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.17076 -40.87608 -39.08333 -37.47034 -36.85058 -34.82624 -34.47480 -32.01122 -31.67424 -31.32589 -28.71474 -28.39294 -27.54475 -26.55282 -25.02768 -23.54816 -22.55247 -22.13706 -21.40197 -20.71869 -19.06458 -18.84107 -18.05403 -17.38083 -17.17052 -16.65796 -16.61356 -16.37295 -16.15930 -15.98541 -15.56481 -15.36871 -15.07639 -14.91895 -14.64055 -14.53376 -14.50531 -14.29122 -13.97063 -13.62460 -13.42889 -13.38684 -13.10394 -12.91311 -12.78560 -12.66182 -12.56167 -12.52811 -12.21342 -11.81986 -11.79427 -11.76667 -11.67776 -11.60890 -11.55400 -11.31101 -10.71618 -10.55124 -10.04789 -9.90892 -9.62743 -8.99707 -8.20823 -6.31186 0.42303 0.47015 1.40150 1.41618 1.49591 1.65460 2.19741 2.40437 2.41407 2.81728 3.12602 3.69613 3.77280 3.83804 3.85214 3.96094 4.02844 4.14393 4.15988 4.26598 4.27759 4.29142 4.38521 4.48000 4.48665 4.60308 4.67850 4.68679 4.75215 4.77881 4.80247 4.87196 4.94775 5.02611 5.06856 5.10007 5.16642 5.33054 5.36930 5.40898 5.44152 5.47098 5.52960 5.66638 5.75914 5.81287 5.88081 6.09010 6.21917 6.47633 6.48835 6.57137 6.84105 7.27457 7.37735 8.89596 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.001960 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.687309 B =14282.454439 C =15878.786779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.105 3.895 4 C -0.212 4.212 5 C -0.077 4.077 6 C -0.118 4.118 7 C -0.065 4.065 8 C -0.086 4.086 9 H 0.078 0.922 10 C -0.150 4.150 11 C 0.126 3.874 12 N -0.718 5.718 13 C 0.526 3.474 14 O -0.574 6.574 15 C 0.080 3.920 16 H 0.109 0.891 17 N -0.830 5.830 18 C -0.120 4.120 19 C 0.029 3.971 20 C -0.545 4.545 21 H 0.055 0.945 22 C 0.005 3.995 23 N -0.926 5.926 24 Si 0.959 3.041 25 H -0.267 1.267 26 H -0.283 1.283 27 H -0.271 1.271 28 C -0.083 4.083 29 C -0.168 4.168 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.411 0.589 43 H 0.343 0.657 44 H 0.352 0.648 45 H 0.043 0.957 46 H 0.066 0.934 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.264 0.736 50 H 0.139 0.861 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.034 -13.815 20.020 30.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.060 3.940 4 C -0.230 4.230 5 C -0.095 4.095 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.105 4.105 9 H 0.097 0.903 10 C -0.207 4.207 11 C 0.002 3.998 12 N -0.370 5.370 13 C 0.312 3.688 14 O -0.453 6.453 15 C -0.035 4.035 16 H 0.126 0.874 17 N -0.362 5.362 18 C -0.160 4.160 19 C -0.008 4.008 20 C -0.583 4.583 21 H 0.073 0.927 22 C -0.194 4.194 23 N -0.566 5.566 24 Si 0.784 3.216 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.101 4.101 29 C -0.186 4.186 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.248 0.752 43 H 0.156 0.844 44 H 0.167 0.833 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.021 0.979 48 H 0.021 0.979 49 H 0.073 0.927 50 H 0.157 0.843 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.451 -13.334 20.814 31.454 hybrid contribution 1.426 -0.859 -1.399 2.174 sum -18.025 -14.192 19.415 30.054 Atomic orbital electron populations 1.23300 0.76646 1.05387 1.02145 1.86040 1.23335 1.27267 1.88867 1.19276 0.92743 0.84717 0.97305 1.21453 1.00924 0.92080 1.08547 1.21098 0.94089 0.97528 0.96782 1.19839 0.93779 0.95153 1.03033 1.20485 1.01210 0.93154 0.95435 1.21252 0.96777 0.95273 0.97219 0.90339 1.21926 0.96153 1.02225 1.00393 1.21448 0.99140 0.96924 0.82243 1.45921 1.55628 1.25346 1.10123 1.20677 0.76829 0.80373 0.90910 1.90618 1.54441 1.52944 1.47276 1.21419 0.99411 0.89856 0.92856 0.87363 1.58761 1.47080 1.14480 1.15843 1.22126 0.96209 0.99916 0.97766 1.18973 0.95391 0.95676 0.90740 1.21595 1.15175 1.25612 0.95954 0.92704 1.25869 0.99785 0.96582 0.97150 1.70053 1.42216 1.38832 1.05487 0.85598 0.79546 0.79339 0.77152 1.19221 1.20850 1.19655 1.21090 1.00656 0.90937 0.97440 1.20623 0.91789 0.99222 1.06984 0.91914 0.86627 0.91725 0.83881 0.84112 0.89728 0.90179 0.91703 0.91928 0.92788 0.91835 0.92303 0.75211 0.84372 0.83316 0.93787 0.91548 0.97938 0.97945 0.92749 0.84272 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.82 10.50 -92.48 -0.97 -6.79 16 3 C 0.10 1.83 6.69 22.50 0.15 1.98 16 4 C -0.21 -3.00 9.04 22.36 0.20 -2.80 16 5 C -0.08 -1.03 7.95 22.25 0.18 -0.85 16 6 C -0.12 -1.68 4.71 -19.85 -0.09 -1.77 16 7 C -0.07 -0.81 4.84 29.85 0.14 -0.66 16 8 C -0.09 -1.24 2.41 -10.79 -0.03 -1.27 16 9 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 10 C -0.15 -2.02 8.63 71.98 0.62 -1.40 16 11 C 0.13 2.50 5.06 86.38 0.44 2.94 16 12 N -0.72 -17.03 5.28 -463.05 -2.45 -19.47 16 13 C 0.53 16.85 7.08 87.66 0.62 17.47 16 14 O -0.57 -22.22 16.25 -3.03 -0.05 -22.27 16 15 C 0.08 2.67 3.21 44.17 0.14 2.81 16 16 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 17 N -0.83 -28.82 8.94 -171.80 -1.54 -30.35 16 18 C -0.12 -4.67 4.78 30.60 0.15 -4.52 16 19 C 0.03 1.44 4.74 29.85 0.14 1.58 16 20 C -0.55 -29.93 9.11 25.60 0.23 -29.69 16 21 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 22 C 0.00 0.26 5.46 84.65 0.46 0.72 16 23 N -0.93 -54.29 13.29 21.45 0.28 -54.01 16 24 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 C -0.08 -1.29 9.69 22.25 0.22 -1.07 16 29 C -0.17 -2.92 9.99 22.36 0.22 -2.70 16 30 H 0.06 0.44 7.65 -2.39 -0.02 0.43 16 31 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.42 7.67 -2.39 -0.02 0.40 16 33 H 0.14 1.41 6.30 -2.91 -0.02 1.39 16 34 H 0.14 1.35 8.04 -2.91 -0.02 1.33 16 35 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 36 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 37 H 0.06 0.85 6.27 -2.39 -0.01 0.84 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.05 0.78 7.18 -2.39 -0.02 0.76 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.41 8.15 7.65 -92.71 -0.71 7.44 16 43 H 0.34 12.19 8.58 -89.69 -0.77 11.42 16 44 H 0.35 12.36 7.55 -89.69 -0.68 11.69 16 45 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.00 0.12 6.87 -2.39 -0.02 0.10 16 49 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 50 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 51 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -69.60 413.69 1.00 -68.60 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -1.22 Total: 36.85 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 4.91 Total: -17.96 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -3.70 Total: -103.83 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.02 Total: -29.06 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -69.60 1.00 -68.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424178923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.544 kcal (2) G-P(sol) polarization free energy of solvation -69.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds