Wall clock time and date at job start Tue Mar 31 2020 19:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00001 * 2 1 4 4 C 1.52997 * 109.47223 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.46914 * 62.62267 * 4 3 2 6 6 C 1.36936 * 120.00370 * 264.91999 * 5 4 3 7 7 H 1.07996 * 119.99839 * 307.82490 * 6 5 4 8 8 C 1.38813 * 120.00106 * 127.81854 * 6 5 4 9 9 N 1.31617 * 120.00093 * 185.12260 * 8 6 5 10 10 Si 1.86800 * 119.99826 * 5.12326 * 8 6 5 11 11 H 1.48493 * 109.47317 * 93.62750 * 10 8 6 12 12 H 1.48501 * 109.47018 * 213.62749 * 10 8 6 13 13 H 1.48503 * 109.47157 * 333.62425 * 10 8 6 14 14 C 1.46509 * 119.99848 * 84.92530 * 5 4 3 15 15 C 1.50697 * 109.47147 * 82.23468 * 14 5 4 16 16 C 1.38128 * 120.03662 * 262.28065 * 15 14 5 17 17 C 1.38261 * 120.07577 * 180.02562 * 16 15 14 18 18 C 1.38302 * 120.14989 * 359.97367 * 17 16 15 19 19 C 1.38082 * 120.07677 * 359.74823 * 18 17 16 20 20 C 1.38889 * 120.03802 * 82.25961 * 15 14 5 21 21 N 1.39668 * 120.07466 * 359.97438 * 20 15 14 22 22 C 1.47018 * 110.99860 * 118.56041 * 21 20 15 23 23 C 1.53102 * 109.25671 * 182.39200 * 22 21 20 24 24 O 1.43017 * 109.25799 * 303.14773 * 23 22 21 25 25 C 1.43023 * 113.73763 * 58.67074 * 24 23 22 26 26 H 1.08998 * 109.50567 * 61.26316 * 25 24 23 27 27 C 1.52997 * 109.54156 * 181.37275 * 25 24 23 28 28 C 1.47013 * 111.00139 * 242.19025 * 21 20 15 29 29 H 1.09000 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47131 * 299.99957 * 1 2 3 31 31 H 1.08998 * 109.47099 * 60.00277 * 1 2 3 32 32 H 1.09002 * 109.46913 * 59.99859 * 3 2 1 33 33 H 1.09004 * 109.46868 * 299.99993 * 3 2 1 34 34 H 1.08995 * 109.47103 * 302.62375 * 4 3 2 35 35 H 1.08996 * 109.47151 * 182.62173 * 4 3 2 36 36 H 0.96998 * 119.99747 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.46760 * 322.23174 * 14 5 4 38 38 H 1.09007 * 109.46797 * 202.23420 * 14 5 4 39 39 H 1.08007 * 119.95906 * 359.97438 * 16 15 14 40 40 H 1.07994 * 119.92471 * 179.97438 * 17 16 15 41 41 H 1.08006 * 119.96514 * 179.97438 * 18 17 16 42 42 H 1.08002 * 120.04342 * 180.27287 * 19 18 17 43 43 H 1.08996 * 109.50705 * 302.32393 * 22 21 20 44 44 H 1.08998 * 109.50601 * 62.45667 * 22 21 20 45 45 H 1.08997 * 109.50378 * 183.21477 * 23 22 21 46 46 H 1.08997 * 109.54434 * 63.10326 * 23 22 21 47 47 H 1.08999 * 109.46865 * 179.80805 * 27 25 24 48 48 H 1.09001 * 109.47168 * 299.80416 * 27 25 24 49 49 H 1.08995 * 109.47132 * 59.80067 * 27 25 24 50 50 H 1.09000 * 109.50999 * 297.54853 * 28 21 20 51 51 H 1.09004 * 109.50485 * 57.67093 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9726 0.5128 -1.2255 6 6 4.1938 -0.8386 -1.2243 7 1 4.8420 -1.2789 -0.4811 8 6 3.5849 -1.6425 -2.1781 9 7 3.7157 -2.9507 -2.1168 10 14 2.5796 -0.8676 -3.5487 11 1 3.4413 -0.6655 -4.7410 12 1 1.4493 -1.7640 -3.9010 13 1 2.0490 0.4425 -3.0934 14 6 4.1731 1.2867 -2.4533 15 6 5.5344 1.9324 -2.4233 16 6 5.6665 3.2492 -2.0274 17 6 6.9150 3.8426 -2.0001 18 6 8.0355 3.1204 -2.3683 19 6 7.9114 1.8020 -2.7595 20 6 6.6577 1.2041 -2.7932 21 7 6.5278 -0.1278 -3.1931 22 6 6.9827 -0.3084 -4.5794 23 6 6.7678 -1.7660 -4.9955 24 8 7.4585 -2.6238 -4.0830 25 6 7.0399 -2.4746 -2.7236 26 1 5.9827 -2.7258 -2.6386 27 6 7.8601 -3.4073 -1.8302 28 6 7.2575 -1.0242 -2.2846 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8535 0.6039 0.8664 35 1 3.9787 2.1794 0.0477 36 1 3.2905 -3.5124 -2.7835 37 1 3.4065 2.0581 -2.5257 38 1 4.1043 0.6238 -3.3159 39 1 4.7933 3.8160 -1.7397 40 1 7.0154 4.8723 -1.6906 41 1 9.0093 3.5870 -2.3462 42 1 8.7874 1.2372 -3.0427 43 1 6.4118 0.3460 -5.2380 44 1 8.0422 -0.0622 -4.6498 45 1 7.1560 -1.9180 -6.0026 46 1 5.7028 -1.9972 -4.9772 47 1 7.5425 -3.2902 -0.7941 48 1 7.7047 -4.4398 -2.1433 49 1 8.9173 -3.1566 -1.9169 50 1 8.3214 -0.7894 -2.3183 51 1 6.8871 -0.8921 -1.2679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459601653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:19 Heat of formation + Delta-G solvation = -14.145522 kcal Electronic energy + Delta-G solvation = -32177.789609 eV Core-core repulsion = 28271.981484 eV Total energy + Delta-G solvation = -3905.808124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.94853 -38.16632 -37.26899 -35.39208 -34.92665 -32.19254 -31.67245 -31.08618 -29.73844 -28.67750 -27.53855 -25.77453 -25.51222 -24.78968 -23.23557 -22.65140 -21.62040 -20.79240 -19.77359 -19.51456 -17.07379 -16.42856 -15.77973 -15.69739 -15.60412 -15.26369 -15.05650 -14.85789 -14.56178 -14.46222 -14.21633 -14.04091 -13.60306 -13.46186 -13.04735 -12.80886 -12.68490 -12.33926 -12.10294 -12.01536 -11.80939 -11.68954 -11.42767 -11.34444 -11.13934 -11.04543 -10.90192 -10.86635 -10.83405 -10.48930 -10.26311 -10.16112 -9.91322 -9.56846 -9.41266 -8.93396 -8.91175 -8.43025 -8.26078 -8.04274 -7.70113 -6.48210 -5.74799 -3.35587 1.73428 1.82878 3.46435 3.57578 3.58781 4.13818 4.29886 4.42799 4.57657 4.72866 5.22835 5.26842 5.29224 5.39529 5.45160 5.55087 5.58801 5.65450 5.69246 5.70686 5.75617 5.79242 5.89196 5.97020 5.97884 5.99753 6.04169 6.05532 6.12063 6.15313 6.19075 6.23533 6.28017 6.36105 6.38019 6.38681 6.48987 6.58513 6.68584 6.75458 6.82090 6.84465 6.94565 7.10929 7.18486 7.35878 7.54026 7.91631 7.96640 8.05175 8.36832 8.61911 9.12744 9.91828 10.32815 11.36326 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009997 B = 0.006842 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.130552 B = 4091.424642 C = 5721.683530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.349 6.349 3 C 0.042 3.958 4 C 0.154 3.846 5 N -0.588 5.588 6 C -0.230 4.230 7 H 0.068 0.932 8 C 0.068 3.932 9 N -0.908 5.908 10 Si 0.892 3.108 11 H -0.291 1.291 12 H -0.315 1.315 13 H -0.272 1.272 14 C 0.179 3.821 15 C -0.062 4.062 16 C -0.119 4.119 17 C -0.128 4.128 18 C -0.129 4.129 19 C -0.153 4.153 20 C 0.110 3.890 21 N -0.472 5.472 22 C 0.024 3.976 23 C 0.070 3.930 24 O -0.394 6.394 25 C 0.069 3.931 26 H 0.125 0.875 27 C -0.132 4.132 28 C 0.057 3.943 29 H 0.078 0.922 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.032 0.968 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.257 0.743 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.086 0.914 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.045 0.955 50 H 0.018 0.982 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 9.010 -0.593 9.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C -0.037 4.037 4 C 0.028 3.972 5 N -0.309 5.309 6 C -0.359 4.359 7 H 0.085 0.915 8 C -0.132 4.132 9 N -0.550 5.550 10 Si 0.726 3.274 11 H -0.219 1.219 12 H -0.244 1.244 13 H -0.198 1.198 14 C 0.055 3.945 15 C -0.065 4.065 16 C -0.139 4.139 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.173 4.173 20 C 0.016 3.984 21 N -0.192 5.192 22 C -0.103 4.103 23 C -0.008 4.008 24 O -0.313 6.313 25 C 0.012 3.988 26 H 0.142 0.858 27 C -0.190 4.190 28 C -0.069 4.069 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.104 0.896 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.036 0.964 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.696 8.355 -0.688 9.161 hybrid contribution -0.093 1.221 -0.896 1.517 sum 3.603 9.575 -1.585 10.353 Atomic orbital electron populations 1.22641 0.83876 1.01857 0.98306 1.88234 1.16849 1.26815 1.94778 1.23310 0.98143 0.84889 0.97378 1.20970 0.89122 0.95939 0.91216 1.43904 1.76535 1.05034 1.05380 1.18306 1.23164 0.79351 1.15056 0.91496 1.25303 0.94930 0.94406 0.98548 1.69723 1.46594 1.02954 1.35740 0.86774 0.79319 0.78768 0.82537 1.21890 1.24401 1.19758 1.20224 0.88458 0.93657 0.92208 1.20999 0.98230 0.92335 0.94980 1.20963 0.96999 0.94755 1.01155 1.20990 0.92912 0.99323 1.01431 1.20793 0.98024 0.94354 1.01676 1.21627 0.97601 0.95834 1.02258 1.18637 0.91560 0.89828 0.98400 1.59597 1.56463 1.02221 1.00935 1.22797 0.98117 0.98484 0.90886 1.22478 0.97813 0.88068 0.92414 1.87835 1.63694 1.61818 1.17965 1.22659 1.03110 0.92837 0.80158 0.85751 1.21616 0.98706 0.99428 0.99251 1.22640 0.93464 0.92705 0.98084 0.90358 0.95424 0.95408 0.95443 0.94983 0.91936 0.93397 0.93294 0.94851 0.91284 0.86666 0.87001 0.87177 0.87194 0.90637 0.94720 0.89614 0.92211 0.91011 0.92224 0.93617 0.96380 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.43 10.32 -35.23 -0.36 -7.79 16 3 C 0.04 0.78 6.29 37.16 0.23 1.01 16 4 C 0.15 2.97 6.09 -4.05 -0.02 2.95 16 5 N -0.59 -13.00 1.96 -174.61 -0.34 -13.34 16 6 C -0.23 -5.82 7.86 -15.06 -0.12 -5.94 16 7 H 0.07 1.90 7.59 -52.49 -0.40 1.50 16 8 C 0.07 1.81 4.96 -17.43 -0.09 1.72 16 9 N -0.91 -25.51 12.47 55.49 0.69 -24.81 16 10 Si 0.89 22.52 24.76 -169.99 -4.21 18.31 16 11 H -0.29 -7.24 7.08 56.52 0.40 -6.84 16 12 H -0.31 -8.35 7.11 56.52 0.40 -7.95 16 13 H -0.27 -6.71 6.09 56.52 0.34 -6.36 16 14 C 0.18 3.76 3.47 -5.19 -0.02 3.74 16 15 C -0.06 -1.15 5.45 -104.42 -0.57 -1.72 16 16 C -0.12 -1.89 9.58 -39.61 -0.38 -2.27 16 17 C -0.13 -1.82 10.04 -39.55 -0.40 -2.21 16 18 C -0.13 -1.87 10.04 -39.61 -0.40 -2.27 16 19 C -0.15 -2.50 8.62 -39.38 -0.34 -2.84 16 20 C 0.11 2.05 4.71 -83.79 -0.39 1.66 16 21 N -0.47 -9.26 3.24 -170.80 -0.55 -9.81 16 22 C 0.02 0.43 5.38 -3.71 -0.02 0.41 16 23 C 0.07 1.27 7.01 37.21 0.26 1.53 16 24 O -0.39 -7.85 10.47 -35.23 -0.37 -8.22 16 25 C 0.07 1.41 3.42 -26.68 -0.09 1.32 16 26 H 0.12 3.01 5.93 -51.93 -0.31 2.70 16 27 C -0.13 -2.33 9.57 37.16 0.36 -1.98 16 28 C 0.06 1.13 4.09 -3.71 -0.02 1.11 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.59 8.07 -51.93 -0.42 0.18 16 34 H 0.06 1.26 8.00 -51.93 -0.42 0.84 16 35 H 0.05 0.81 8.02 -51.93 -0.42 0.39 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.03 0.67 7.74 -51.93 -0.40 0.26 16 38 H 0.07 1.61 3.36 -51.93 -0.17 1.43 16 39 H 0.12 1.62 8.05 -52.48 -0.42 1.20 16 40 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 42 H 0.11 1.71 7.04 -52.49 -0.37 1.34 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.03 0.57 7.30 -51.93 -0.38 0.19 16 45 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 46 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.02 0.34 7.32 -51.93 -0.38 -0.04 16 51 H 0.09 2.04 7.03 -51.93 -0.37 1.67 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -28.85 392.42 -8.84 -37.68 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.72 Total: 4.20 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -0.89 Total: -2.14 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.20 Total: -47.97 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.73 Total: -16.01 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.21 Total: 18.31 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.85 -8.84 -37.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459601653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.539 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds