Wall clock time and date at job start Tue Mar 31 2020 19:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00001 * 2 1 4 4 C 1.52997 * 109.47223 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.46914 * 62.62267 * 4 3 2 6 6 C 1.36936 * 120.00370 * 264.91999 * 5 4 3 7 7 H 1.07996 * 119.99839 * 307.82490 * 6 5 4 8 8 C 1.38813 * 120.00106 * 127.81854 * 6 5 4 9 9 N 1.31617 * 120.00093 * 185.12260 * 8 6 5 10 10 Si 1.86800 * 119.99826 * 5.12326 * 8 6 5 11 11 H 1.48493 * 109.47317 * 93.62750 * 10 8 6 12 12 H 1.48501 * 109.47018 * 213.62749 * 10 8 6 13 13 H 1.48503 * 109.47157 * 333.62425 * 10 8 6 14 14 C 1.46509 * 119.99848 * 84.92530 * 5 4 3 15 15 C 1.50697 * 109.47147 * 82.23468 * 14 5 4 16 16 C 1.38128 * 120.03662 * 262.28065 * 15 14 5 17 17 C 1.38261 * 120.07577 * 180.02562 * 16 15 14 18 18 C 1.38302 * 120.14989 * 359.97367 * 17 16 15 19 19 C 1.38082 * 120.07677 * 359.74823 * 18 17 16 20 20 C 1.38889 * 120.03802 * 82.25961 * 15 14 5 21 21 N 1.39668 * 120.07466 * 359.97438 * 20 15 14 22 22 C 1.47018 * 110.99860 * 118.56041 * 21 20 15 23 23 C 1.53102 * 109.25671 * 182.39200 * 22 21 20 24 24 O 1.43017 * 109.25799 * 303.14773 * 23 22 21 25 25 C 1.43023 * 113.73763 * 58.67074 * 24 23 22 26 26 H 1.08998 * 109.50567 * 61.26316 * 25 24 23 27 27 C 1.52997 * 109.54156 * 181.37275 * 25 24 23 28 28 C 1.47013 * 111.00139 * 242.19025 * 21 20 15 29 29 H 1.09000 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47131 * 299.99957 * 1 2 3 31 31 H 1.08998 * 109.47099 * 60.00277 * 1 2 3 32 32 H 1.09002 * 109.46913 * 59.99859 * 3 2 1 33 33 H 1.09004 * 109.46868 * 299.99993 * 3 2 1 34 34 H 1.08995 * 109.47103 * 302.62375 * 4 3 2 35 35 H 1.08996 * 109.47151 * 182.62173 * 4 3 2 36 36 H 0.96998 * 119.99747 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.46760 * 322.23174 * 14 5 4 38 38 H 1.09007 * 109.46797 * 202.23420 * 14 5 4 39 39 H 1.08007 * 119.95906 * 359.97438 * 16 15 14 40 40 H 1.07994 * 119.92471 * 179.97438 * 17 16 15 41 41 H 1.08006 * 119.96514 * 179.97438 * 18 17 16 42 42 H 1.08002 * 120.04342 * 180.27287 * 19 18 17 43 43 H 1.08996 * 109.50705 * 302.32393 * 22 21 20 44 44 H 1.08998 * 109.50601 * 62.45667 * 22 21 20 45 45 H 1.08997 * 109.50378 * 183.21477 * 23 22 21 46 46 H 1.08997 * 109.54434 * 63.10326 * 23 22 21 47 47 H 1.08999 * 109.46865 * 179.80805 * 27 25 24 48 48 H 1.09001 * 109.47168 * 299.80416 * 27 25 24 49 49 H 1.08995 * 109.47132 * 59.80067 * 27 25 24 50 50 H 1.09000 * 109.50999 * 297.54853 * 28 21 20 51 51 H 1.09004 * 109.50485 * 57.67093 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9726 0.5128 -1.2255 6 6 4.1938 -0.8386 -1.2243 7 1 4.8420 -1.2789 -0.4811 8 6 3.5849 -1.6425 -2.1781 9 7 3.7157 -2.9507 -2.1168 10 14 2.5796 -0.8676 -3.5487 11 1 3.4413 -0.6655 -4.7410 12 1 1.4493 -1.7640 -3.9010 13 1 2.0490 0.4425 -3.0934 14 6 4.1731 1.2867 -2.4533 15 6 5.5344 1.9324 -2.4233 16 6 5.6665 3.2492 -2.0274 17 6 6.9150 3.8426 -2.0001 18 6 8.0355 3.1204 -2.3683 19 6 7.9114 1.8020 -2.7595 20 6 6.6577 1.2041 -2.7932 21 7 6.5278 -0.1278 -3.1931 22 6 6.9827 -0.3084 -4.5794 23 6 6.7678 -1.7660 -4.9955 24 8 7.4585 -2.6238 -4.0830 25 6 7.0399 -2.4746 -2.7236 26 1 5.9827 -2.7258 -2.6386 27 6 7.8601 -3.4073 -1.8302 28 6 7.2575 -1.0242 -2.2846 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8535 0.6039 0.8664 35 1 3.9787 2.1794 0.0477 36 1 3.2905 -3.5124 -2.7835 37 1 3.4065 2.0581 -2.5257 38 1 4.1043 0.6238 -3.3159 39 1 4.7933 3.8160 -1.7397 40 1 7.0154 4.8723 -1.6906 41 1 9.0093 3.5870 -2.3462 42 1 8.7874 1.2372 -3.0427 43 1 6.4118 0.3460 -5.2380 44 1 8.0422 -0.0622 -4.6498 45 1 7.1560 -1.9180 -6.0026 46 1 5.7028 -1.9972 -4.9772 47 1 7.5425 -3.2902 -0.7941 48 1 7.7047 -4.4398 -2.1433 49 1 8.9173 -3.1566 -1.9169 50 1 8.3214 -0.7894 -2.3183 51 1 6.8871 -0.8921 -1.2679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459601653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:18 Heat of formation + Delta-G solvation = -31.465761 kcal Electronic energy + Delta-G solvation = -32178.540671 eV Core-core repulsion = 28271.981484 eV Total energy + Delta-G solvation = -3906.559186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.35226 -39.60469 -38.77139 -37.04180 -36.34289 -33.83643 -33.45638 -32.52184 -31.05266 -30.24065 -28.98654 -27.17862 -27.13583 -26.26929 -24.92704 -24.07685 -22.99574 -22.24652 -21.34104 -21.01004 -18.80311 -17.91397 -17.34357 -17.23599 -17.14346 -16.75493 -16.55306 -16.25913 -16.10561 -16.00753 -15.74064 -15.43749 -15.14692 -14.86536 -14.68026 -14.33828 -14.26996 -14.00079 -13.53921 -13.40590 -13.31089 -13.13412 -12.94424 -12.80772 -12.75101 -12.57089 -12.41182 -12.35245 -12.28393 -12.01440 -11.89250 -11.73356 -11.69556 -11.34411 -11.19823 -10.57943 -10.37027 -10.22665 -9.63969 -9.36423 -9.14472 -8.30669 -7.81587 -5.39247 0.50560 0.58310 1.40891 1.47343 1.52617 2.66058 2.83358 2.88436 2.97768 3.18507 3.50922 3.69482 3.97512 4.01132 4.07687 4.15395 4.19238 4.24823 4.28441 4.36665 4.39297 4.47006 4.48291 4.53227 4.58488 4.62166 4.66597 4.67002 4.71860 4.75812 4.80440 4.81877 4.84319 4.87804 4.91721 4.94385 5.00372 5.07536 5.27413 5.29220 5.32061 5.49282 5.61210 5.69020 5.81695 6.07570 6.11966 6.29092 6.35357 6.50694 6.60069 6.69330 7.32084 7.91723 8.37925 9.30905 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009997 B = 0.006842 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.130552 B = 4091.424642 C = 5721.683530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.394 6.394 3 C 0.045 3.955 4 C 0.152 3.848 5 N -0.600 5.600 6 C -0.191 4.191 7 H 0.029 0.971 8 C 0.035 3.965 9 N -0.942 5.942 10 Si 0.932 3.068 11 H -0.294 1.294 12 H -0.338 1.338 13 H -0.261 1.261 14 C 0.184 3.816 15 C -0.087 4.087 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.159 4.159 20 C 0.088 3.912 21 N -0.493 5.493 22 C 0.029 3.971 23 C 0.067 3.933 24 O -0.398 6.398 25 C 0.066 3.934 26 H 0.084 0.916 27 C -0.125 4.125 28 C 0.075 3.925 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.247 0.753 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.135 0.865 40 H 0.149 0.851 41 H 0.142 0.858 42 H 0.115 0.885 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.121 0.879 46 H 0.025 0.975 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.067 0.933 50 H 0.031 0.969 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 12.774 -0.346 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C -0.034 4.034 4 C 0.026 3.974 5 N -0.322 5.322 6 C -0.322 4.322 7 H 0.046 0.954 8 C -0.161 4.161 9 N -0.588 5.588 10 Si 0.768 3.232 11 H -0.222 1.222 12 H -0.270 1.270 13 H -0.186 1.186 14 C 0.060 3.940 15 C -0.090 4.090 16 C -0.136 4.136 17 C -0.137 4.137 18 C -0.138 4.138 19 C -0.179 4.179 20 C -0.006 4.006 21 N -0.214 5.214 22 C -0.097 4.097 23 C -0.010 4.010 24 O -0.317 6.317 25 C 0.009 3.991 26 H 0.102 0.898 27 C -0.183 4.183 28 C -0.052 4.052 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.153 0.847 40 H 0.167 0.833 41 H 0.160 0.840 42 H 0.133 0.867 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.139 0.861 46 H 0.043 0.957 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.086 0.914 50 H 0.049 0.951 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.086 12.180 -0.435 13.207 hybrid contribution -0.457 0.189 -0.930 1.054 sum 4.629 12.369 -1.366 13.277 Atomic orbital electron populations 1.22778 0.81888 1.02359 0.99933 1.88166 1.19292 1.28722 1.95139 1.23299 0.96985 0.84205 0.98924 1.21069 0.90302 0.96787 0.89203 1.43958 1.77350 1.04129 1.06722 1.17869 1.20505 0.80972 1.12809 0.95366 1.25538 0.96225 0.94349 0.99972 1.69839 1.48587 1.03944 1.36396 0.86146 0.77656 0.78040 0.81383 1.22197 1.26961 1.18579 1.20026 0.90577 0.93144 0.90257 1.20831 0.96705 0.93946 0.97555 1.21186 0.98777 0.93521 1.00094 1.21387 0.91799 1.00846 0.99708 1.21205 0.99763 0.93386 0.99469 1.21704 0.96676 0.96913 1.02606 1.18792 0.92745 0.89341 0.99739 1.59492 1.57167 1.03195 1.01585 1.22769 0.99078 0.97797 0.90104 1.22621 0.95977 0.88527 0.93826 1.87819 1.63556 1.62502 1.17840 1.22548 1.01425 0.94106 0.81062 0.89767 1.21557 0.99530 0.98816 0.98402 1.22332 0.93877 0.92325 0.96619 0.90613 0.92319 0.95061 0.91931 0.95071 0.93508 0.90398 0.94366 0.93791 0.94048 0.84723 0.83312 0.83981 0.86651 0.90275 0.92986 0.86089 0.95672 0.91359 0.92257 0.91392 0.95081 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.39 -16.59 10.32 -148.98 -1.54 -18.13 16 3 C 0.04 1.55 6.29 71.98 0.45 2.01 16 4 C 0.15 5.68 6.09 86.38 0.53 6.21 16 5 N -0.60 -26.60 1.96 -706.35 -1.39 -27.99 16 6 C -0.19 -10.09 7.86 84.03 0.66 -9.43 16 7 H 0.03 1.72 7.59 -2.91 -0.02 1.70 16 8 C 0.04 1.96 4.96 84.86 0.42 2.38 16 9 N -0.94 -56.31 12.47 21.65 0.27 -56.04 16 10 Si 0.93 48.35 24.76 68.60 1.70 50.04 16 11 H -0.29 -15.07 7.08 99.48 0.70 -14.36 16 12 H -0.34 -18.63 7.11 99.48 0.71 -17.92 16 13 H -0.26 -12.80 6.09 99.48 0.61 -12.20 16 14 C 0.18 7.60 3.47 85.63 0.30 7.90 16 15 C -0.09 -3.10 5.45 -19.74 -0.11 -3.21 16 16 C -0.12 -3.26 9.58 22.25 0.21 -3.04 16 17 C -0.12 -2.77 10.04 22.29 0.22 -2.55 16 18 C -0.12 -2.89 10.04 22.25 0.22 -2.67 16 19 C -0.16 -4.74 8.62 22.40 0.19 -4.55 16 20 C 0.09 3.17 4.71 38.22 0.18 3.35 16 21 N -0.49 -19.47 3.24 -694.30 -2.25 -21.72 16 22 C 0.03 1.03 5.38 86.31 0.46 1.49 16 23 C 0.07 2.48 7.01 72.02 0.50 2.99 16 24 O -0.40 -16.05 10.47 -148.98 -1.56 -17.61 16 25 C 0.07 2.80 3.42 30.62 0.10 2.90 16 26 H 0.08 4.35 5.93 -2.39 -0.01 4.33 16 27 C -0.13 -4.52 9.57 71.98 0.69 -3.84 16 28 C 0.08 3.01 4.09 86.31 0.35 3.37 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.03 1.09 8.07 -2.38 -0.02 1.07 16 34 H 0.05 1.88 8.00 -2.39 -0.02 1.86 16 35 H 0.08 2.42 8.02 -2.39 -0.02 2.40 16 36 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.04 1.68 7.74 -2.39 -0.02 1.66 16 38 H 0.04 1.94 3.36 -2.38 -0.01 1.94 16 39 H 0.13 3.18 8.05 -2.91 -0.02 3.16 16 40 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.12 3.27 7.04 -2.91 -0.02 3.25 16 43 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.05 1.63 7.30 -2.39 -0.02 1.61 16 45 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 46 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.03 1.14 7.32 -2.39 -0.02 1.12 16 51 H 0.07 2.96 7.03 -2.39 -0.02 2.95 16 Total: -1.00 -66.79 392.42 2.67 -64.12 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.79 Total: 21.87 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.65 Total: 5.44 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -3.37 Total: -105.74 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -3.10 Total: -35.74 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 1.70 Total: 50.04 kcal Total: -66.79 2.67 -64.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459601653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.658 kcal (2) G-P(sol) polarization free energy of solvation -66.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds