Wall clock time and date at job start Tue Mar 31 2020 19:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.54316 * 2 1 4 4 C 1.53095 * 109.50426 * 239.89036 * 2 1 3 5 5 N 1.47018 * 109.25967 * 183.21659 * 4 2 1 6 6 C 1.46895 * 111.00214 * 182.39533 * 5 4 2 7 7 C 1.53000 * 109.47296 * 75.33279 * 6 5 4 8 8 H 1.09000 * 109.47170 * 299.95350 * 7 6 5 9 9 O 1.42903 * 109.47083 * 59.95077 * 7 6 5 10 10 C 1.52997 * 109.47172 * 179.97438 * 7 6 5 11 11 N 1.46504 * 109.47326 * 180.02562 * 10 7 6 12 12 C 1.39679 * 120.00242 * 180.02562 * 11 10 7 13 13 C 1.39338 * 119.95018 * 359.72511 * 12 11 10 14 14 C 1.38484 * 120.42215 * 179.72230 * 13 12 11 15 15 C 1.37688 * 120.32107 * 0.55241 * 14 13 12 16 16 C 1.40745 * 119.89713 * 359.72589 * 15 14 13 17 17 C 1.41409 * 120.20764 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00141 * 205.60384 * 17 16 15 19 19 C 1.39928 * 120.00442 * 25.60579 * 17 16 15 20 20 N 1.30836 * 119.99835 * 16.67402 * 19 17 16 21 21 Si 1.86795 * 120.00363 * 196.67327 * 19 17 16 22 22 H 1.48498 * 109.47144 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46967 * 119.99700 * 21 19 17 24 24 H 1.48503 * 109.47390 * 239.99918 * 21 19 17 25 25 C 1.38281 * 119.95328 * 179.97438 * 12 11 10 26 26 C 1.47009 * 110.74930 * 58.61539 * 5 4 2 27 27 C 1.53097 * 109.25990 * 301.38378 * 26 5 4 28 28 H 1.09001 * 109.50592 * 176.78340 * 27 26 5 29 29 C 1.52999 * 109.50915 * 296.91675 * 27 26 5 30 30 O 1.43018 * 109.50489 * 120.11169 * 2 1 3 31 31 H 1.08996 * 109.46891 * 180.11188 * 1 2 3 32 32 H 1.09003 * 109.46879 * 300.10356 * 1 2 3 33 33 H 1.08992 * 109.47293 * 60.10532 * 1 2 3 34 34 H 1.09001 * 109.50730 * 63.27975 * 4 2 1 35 35 H 1.09000 * 109.51237 * 303.15173 * 4 2 1 36 36 H 1.08998 * 109.47087 * 315.33700 * 6 5 4 37 37 H 1.08998 * 109.47188 * 195.33338 * 6 5 4 38 38 H 0.96708 * 113.99869 * 59.99859 * 9 7 6 39 39 H 1.08998 * 109.47190 * 60.00402 * 10 7 6 40 40 H 1.09009 * 109.47362 * 300.00064 * 10 7 6 41 41 H 0.97002 * 119.99780 * 359.97438 * 11 10 7 42 42 H 1.07994 * 119.78913 * 359.97438 * 13 12 11 43 43 H 1.07993 * 119.83835 * 180.27262 * 14 13 12 44 44 H 1.08006 * 120.05224 * 179.74368 * 15 14 13 45 45 H 0.96996 * 119.99813 * 179.97438 * 20 19 17 46 46 H 1.07999 * 120.15719 * 0.02562 * 25 12 11 47 47 H 1.09000 * 109.51019 * 61.32625 * 26 5 4 48 48 H 1.09002 * 109.50208 * 181.44918 * 26 5 4 49 49 H 1.08999 * 109.46972 * 179.78174 * 29 27 26 50 50 H 1.09000 * 109.46945 * 299.78257 * 29 27 26 51 51 H 1.08996 * 109.47002 * 59.77866 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2484 5 7 3.5093 -0.7885 -1.2045 6 6 4.0446 -1.4269 -2.4144 7 6 3.9643 -0.4467 -3.5864 8 1 2.9247 -0.1655 -3.7544 9 8 4.7306 0.7211 -3.2840 10 6 4.5224 -1.1114 -4.8463 11 7 4.4462 -0.1725 -5.9685 12 6 4.8996 -0.5567 -7.2325 13 6 5.4296 -1.8310 -7.4238 14 6 5.8767 -2.2241 -8.6742 15 6 5.8127 -1.3549 -9.7402 16 6 5.2852 -0.0625 -9.5608 17 6 5.2159 0.8353 -10.6512 18 1 5.2167 1.9007 -10.4744 19 6 5.1462 0.3433 -11.9593 20 7 4.8193 -0.9055 -12.1720 21 14 5.5199 1.4696 -13.4019 22 1 5.8617 2.8237 -12.8972 23 1 6.6672 0.9244 -14.1713 24 1 4.3285 1.5558 -14.2842 25 6 4.8266 0.3301 -8.2911 26 6 3.9639 -1.4885 0.0057 27 6 3.4335 -0.7568 1.2415 28 1 3.7201 -1.3042 2.1395 29 6 4.0230 0.6541 1.2922 30 8 2.0076 -0.6763 1.1662 31 1 -0.3633 -1.0276 0.0020 32 1 -0.3633 0.5155 0.8891 33 1 -0.3633 0.5121 -0.8908 34 1 1.7273 -0.1795 -2.1390 35 1 1.6332 -1.7343 -1.2760 36 1 3.4594 -2.3172 -2.6447 37 1 5.0841 -1.7087 -2.2469 38 1 5.6678 0.5456 -3.1224 39 1 3.9376 -2.0018 -5.0768 40 1 5.5621 -1.3928 -4.6786 41 1 4.0801 0.7156 -5.8337 42 1 5.4883 -2.5180 -6.5927 43 1 6.2818 -3.2155 -8.8128 44 1 6.1665 -1.6646 -10.7125 45 1 4.7706 -1.2465 -13.0787 46 1 4.4201 1.3196 -8.1429 47 1 3.5866 -2.5111 -0.0018 48 1 5.0536 -1.5021 0.0305 49 1 3.6419 1.1758 2.1701 50 1 5.1097 0.5920 1.3496 51 1 3.7373 1.1997 0.3929 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563010515.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:18 Heat of formation + Delta-G solvation = -73.616639 kcal Electronic energy + Delta-G solvation = -28633.842831 eV Core-core repulsion = 24725.455845 eV Total energy + Delta-G solvation = -3908.386986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.38598 -38.43721 -37.39886 -35.57849 -34.57031 -33.70904 -32.96970 -31.06963 -29.93653 -29.66408 -27.72718 -27.24323 -25.52189 -25.18078 -23.44458 -22.69199 -21.65285 -20.56938 -20.07257 -19.76058 -17.31212 -16.98772 -16.86566 -16.35809 -16.13029 -15.64123 -15.33732 -15.20034 -14.96927 -14.60602 -14.51354 -14.28523 -13.94970 -13.47612 -13.27905 -13.08015 -12.77483 -12.67235 -12.61019 -12.56507 -12.23569 -12.08671 -12.07634 -11.96910 -11.60577 -11.53541 -11.40265 -11.14522 -11.06775 -10.92043 -10.62103 -10.56813 -10.39045 -10.14044 -9.82025 -9.69194 -9.30020 -9.20936 -8.73453 -8.62755 -7.36597 -6.68873 -6.19615 -4.29775 2.85695 3.11363 3.17256 3.22940 3.27966 3.37603 3.44150 3.98561 4.12467 4.38446 4.48708 4.50451 4.60309 4.70860 4.73896 4.84184 4.86590 4.98934 5.03047 5.03853 5.09255 5.23032 5.25621 5.31128 5.37912 5.40659 5.44940 5.60976 5.64813 5.75303 5.80855 5.82057 5.84767 6.04884 6.07069 6.32240 6.53156 6.60111 6.62471 6.92078 7.05158 7.05591 7.13922 7.35727 7.41288 7.65604 7.79978 7.92978 8.15796 8.25836 8.52831 8.66323 8.80573 9.01897 9.13257 10.27558 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.001876 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.240902 B =14919.259113 C =15208.627474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.072 0.928 4 C 0.023 3.977 5 N -0.521 5.521 6 C 0.025 3.975 7 C 0.106 3.894 8 H 0.098 0.902 9 O -0.543 6.543 10 C 0.107 3.893 11 N -0.756 5.756 12 C 0.224 3.776 13 C -0.303 4.303 14 C -0.076 4.076 15 C -0.198 4.198 16 C 0.141 3.859 17 C -0.464 4.464 18 H 0.076 0.924 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.906 3.094 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.276 1.276 25 C -0.287 4.287 26 C 0.023 3.977 27 C 0.091 3.909 28 H 0.103 0.897 29 C -0.176 4.176 30 O -0.379 6.379 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.372 0.628 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.392 0.608 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.278 0.722 46 H 0.089 0.911 47 H 0.040 0.960 48 H 0.085 0.915 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 -1.065 23.312 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.089 0.911 4 C -0.106 4.106 5 N -0.246 5.246 6 C -0.104 4.104 7 C 0.046 3.954 8 H 0.116 0.884 9 O -0.347 6.347 10 C -0.019 4.019 11 N -0.390 5.390 12 C 0.126 3.874 13 C -0.326 4.326 14 C -0.095 4.095 15 C -0.218 4.218 16 C 0.138 3.862 17 C -0.494 4.494 18 H 0.094 0.906 19 C -0.141 4.141 20 N -0.420 5.420 21 Si 0.731 3.269 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.201 1.201 25 C -0.311 4.311 26 C -0.105 4.105 27 C 0.033 3.967 28 H 0.120 0.880 29 C -0.233 4.233 30 O -0.299 6.299 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.219 0.781 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.226 0.774 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.132 0.868 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.058 0.942 48 H 0.104 0.896 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.057 -0.711 23.300 23.661 hybrid contribution 0.399 -0.533 -0.895 1.115 sum -3.658 -1.244 22.405 22.736 Atomic orbital electron populations 1.21757 0.92858 1.02911 1.02767 1.22150 0.94638 0.96155 0.84132 0.91056 1.22884 0.87824 1.00160 0.99692 1.62074 1.08735 1.52356 1.01390 1.22802 1.00894 0.96015 0.90686 1.22052 0.96569 0.85934 0.90864 0.88413 1.86591 1.23987 1.31677 1.92473 1.21657 1.00056 0.93373 0.86842 1.44248 1.72646 1.16055 1.06084 1.17469 0.93079 0.93349 0.83530 1.19837 1.19257 0.96256 0.97219 1.20433 0.98760 0.97270 0.93055 1.21172 1.07162 0.95584 0.97884 1.17353 0.85985 0.91996 0.90878 1.19577 1.45108 0.94518 0.90172 0.90598 1.25896 0.92269 0.95351 1.00581 1.69868 1.33735 1.15376 1.23001 0.86308 0.78767 0.81308 0.80565 1.18461 1.19792 1.20103 1.20418 1.17343 0.99524 0.93830 1.22816 1.01065 0.95899 0.90730 1.22234 0.80831 0.96578 0.97047 0.87959 1.22280 1.01197 0.96887 1.02931 1.88031 1.20725 1.78181 1.42940 0.91960 0.91580 0.90794 0.89480 0.94058 0.93382 0.90128 0.78135 0.92725 0.93091 0.77367 0.89916 0.89711 0.86804 0.91138 0.89263 0.94162 0.89630 0.92537 0.91754 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.57 37.16 0.36 -0.71 16 2 C 0.09 0.77 3.03 -26.68 -0.08 0.69 16 3 H 0.07 0.67 6.49 -51.93 -0.34 0.33 16 4 C 0.02 0.21 4.75 -3.71 -0.02 0.19 16 5 N -0.52 -4.72 3.89 -234.31 -0.91 -5.63 16 6 C 0.02 0.22 4.66 -3.83 -0.02 0.21 16 7 C 0.11 1.16 3.10 -26.73 -0.08 1.08 16 8 H 0.10 1.14 6.88 -51.93 -0.36 0.78 16 9 O -0.54 -6.41 12.95 -35.23 -0.46 -6.87 16 10 C 0.11 1.48 4.57 -4.04 -0.02 1.46 16 11 N -0.76 -13.47 5.62 -58.68 -0.33 -13.80 16 12 C 0.22 5.07 6.64 -83.86 -0.56 4.51 16 13 C -0.30 -6.89 9.32 -39.08 -0.36 -7.25 16 14 C -0.08 -1.84 10.02 -39.69 -0.40 -2.24 16 15 C -0.20 -5.30 8.68 -38.84 -0.34 -5.64 16 16 C 0.14 3.87 5.56 -106.85 -0.59 3.28 16 17 C -0.46 -12.64 9.05 -37.74 -0.34 -12.98 16 18 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 19 C 0.08 1.96 5.15 -17.34 -0.09 1.87 16 20 N -0.79 -21.04 10.96 55.55 0.61 -20.43 16 21 Si 0.91 19.05 29.59 -169.99 -5.03 14.02 16 22 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 C -0.29 -7.25 9.63 -38.68 -0.37 -7.63 16 26 C 0.02 0.19 5.02 -3.71 -0.02 0.17 16 27 C 0.09 0.73 3.92 -26.68 -0.10 0.63 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 C -0.18 -1.36 8.88 37.16 0.33 -1.03 16 30 O -0.38 -3.77 10.28 -35.23 -0.36 -4.13 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.80 6.80 -51.93 -0.35 0.45 16 35 H 0.04 0.39 8.13 -51.93 -0.42 -0.03 16 36 H 0.05 0.43 8.00 -51.93 -0.42 0.02 16 37 H 0.08 0.65 7.87 -51.93 -0.41 0.25 16 38 H 0.37 3.50 9.05 45.56 0.41 3.91 16 39 H 0.05 0.78 7.95 -51.93 -0.41 0.37 16 40 H 0.05 0.70 7.93 -51.92 -0.41 0.29 16 41 H 0.39 6.75 8.35 -40.82 -0.34 6.41 16 42 H 0.08 1.68 6.70 -52.49 -0.35 1.33 16 43 H 0.08 1.84 8.06 -52.49 -0.42 1.41 16 44 H 0.11 3.15 6.19 -52.48 -0.33 2.82 16 45 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 46 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.09 0.59 8.02 -51.93 -0.42 0.18 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.08 0.71 6.13 -51.93 -0.32 0.39 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -29.93 399.98 -10.98 -40.91 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -7.81 Total: 13.31 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -2.71 Total: -23.40 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -0.63 Total: -39.86 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.82 Total: -11.00 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.93 -10.98 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563010515.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.711 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds