Wall clock time and date at job start Tue Mar 31 2020 19:33:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09005 * 109.46620 * 2 1
4 4 C 1.50702 * 109.46987 * 119.99544 * 2 1 3
5 5 C 1.38228 * 119.99949 * 62.56062 * 4 2 1
6 6 C 1.38232 * 120.00044 * 179.79028 * 5 4 2
7 7 C 1.38241 * 120.00129 * 0.43529 * 6 5 4
8 8 C 1.38237 * 119.99466 * 359.81856 * 7 6 5
9 9 C 1.38233 * 119.99907 * 242.83219 * 4 2 1
10 10 C 1.52995 * 109.47250 * 239.99562 * 2 1 3
11 11 H 1.08990 * 109.47399 * 301.34526 * 10 2 1
12 12 C 1.53008 * 109.47043 * 61.34587 * 10 2 1
13 13 O 1.42904 * 109.46933 * 55.40571 * 12 10 2
14 14 N 1.46500 * 109.46919 * 181.34250 * 10 2 1
15 15 C 1.34782 * 119.99829 * 155.00231 * 14 10 2
16 16 O 1.21584 * 119.99826 * 0.02562 * 15 14 10
17 17 N 1.34772 * 120.00031 * 180.02562 * 15 14 10
18 18 C 1.46498 * 120.00092 * 180.02562 * 17 15 14
19 19 C 1.53004 * 109.47384 * 180.02562 * 18 17 15
20 20 C 1.53003 * 109.46820 * 300.00017 * 19 18 17
21 21 C 1.53001 * 109.47307 * 59.99682 * 19 18 17
22 22 C 1.50696 * 109.47114 * 180.02562 * 19 18 17
23 23 H 1.07993 * 120.00420 * 359.97438 * 22 19 18
24 24 C 1.37877 * 119.99659 * 179.97438 * 22 19 18
25 25 N 1.31511 * 120.00308 * 359.97438 * 24 22 19
26 26 Si 1.86802 * 120.00125 * 179.97438 * 24 22 19
27 27 H 1.48509 * 109.46980 * 0.02562 * 26 24 22
28 28 H 1.48502 * 109.47137 * 119.99772 * 26 24 22
29 29 H 1.48494 * 109.47667 * 240.00265 * 26 24 22
30 30 H 1.08996 * 109.47294 * 293.87552 * 1 2 3
31 31 H 1.09008 * 109.47006 * 53.87384 * 1 2 3
32 32 H 1.08998 * 109.47023 * 173.87513 * 1 2 3
33 33 H 1.08005 * 120.00294 * 0.02562 * 5 4 2
34 34 H 1.08010 * 120.00294 * 180.27661 * 6 5 4
35 35 H 1.07996 * 119.99808 * 179.83508 * 7 6 5
36 36 H 1.07999 * 119.99818 * 179.97438 * 8 7 6
37 37 H 1.07998 * 120.00160 * 359.97438 * 9 4 2
38 38 H 1.08998 * 109.46977 * 295.40408 * 12 10 2
39 39 H 1.09003 * 109.46945 * 175.40381 * 12 10 2
40 40 H 0.96702 * 113.99298 * 180.02562 * 13 12 10
41 41 H 0.96994 * 120.00315 * 335.00179 * 14 10 2
42 42 H 0.97003 * 119.99876 * 359.97438 * 17 15 14
43 43 H 1.08998 * 109.47280 * 299.99984 * 18 17 15
44 44 H 1.09001 * 109.47213 * 60.00217 * 18 17 15
45 45 H 1.08994 * 109.47386 * 59.99977 * 20 19 18
46 46 H 1.09004 * 109.47100 * 179.97438 * 20 19 18
47 47 H 1.09001 * 109.47309 * 299.99597 * 20 19 18
48 48 H 1.09003 * 109.46843 * 59.99976 * 21 19 18
49 49 H 1.08991 * 109.47108 * 180.02562 * 21 19 18
50 50 H 1.09000 * 109.47182 * 300.00616 * 21 19 18
51 51 H 0.97001 * 120.00400 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 1.2305
5 6 1.7426 -2.0481 1.4230
6 6 2.2070 -2.7008 2.5496
7 6 2.9536 -2.0134 3.4882
8 6 3.2388 -0.6741 3.2983
9 6 2.7780 -0.0226 2.1696
10 6 2.0400 -0.7213 -1.2491
11 1 1.6572 -1.7417 -1.2613
12 6 1.5579 0.0192 -2.4983
13 8 1.9697 1.3859 -2.4304
14 7 3.5047 -0.7494 -1.2330
15 6 4.1676 -1.7131 -1.9026
16 8 3.5501 -2.5589 -2.5203
17 7 5.5150 -1.7392 -1.8873
18 6 6.2356 -2.7864 -2.6155
19 6 7.7421 -2.5884 -2.4357
20 6 8.1450 -1.2173 -2.9824
21 6 8.0930 -2.6675 -0.9486
22 6 8.4833 -3.6652 -3.1853
23 1 7.9349 -4.4160 -3.7347
24 6 9.8618 -3.6918 -3.1698
25 7 10.5297 -2.7773 -2.5012
26 14 10.7807 -5.0270 -4.0984
27 1 9.8055 -5.9271 -4.7651
28 1 11.6582 -4.4040 -5.1217
29 1 11.6087 -5.8112 -3.1474
30 1 -0.3634 0.4159 0.9397
31 1 -0.3633 0.6059 -0.8301
32 1 -0.3633 -1.0218 -0.1096
33 1 1.1566 -2.5845 0.6913
34 1 1.9844 -3.7473 2.6978
35 1 3.3141 -2.5226 4.3697
36 1 3.8217 -0.1369 4.0318
37 1 3.0010 1.0236 2.0212
38 1 0.4704 -0.0304 -2.5529
39 1 1.9878 -0.4463 -3.3852
40 1 1.6974 1.9169 -3.1914
41 1 3.9973 -0.0744 -0.7405
42 1 6.0076 -1.0642 -1.3947
43 1 5.9489 -3.7631 -2.2257
44 1 5.9854 -2.7302 -3.6749
45 1 7.6089 -0.4382 -2.4407
46 1 9.2182 -1.0760 -2.8539
47 1 7.8951 -1.1609 -4.0419
48 1 7.8059 -3.6443 -0.5591
49 1 9.1661 -2.5260 -0.8205
50 1 7.5568 -1.8884 -0.4067
51 1 11.4994 -2.7962 -2.4900
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000590949002.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:33:06
Heat of formation + Delta-G solvation = -69.779438 kcal
Electronic energy + Delta-G solvation = -29889.113805 eV
Core-core repulsion = 25980.893213 eV
Total energy + Delta-G solvation = -3908.220592 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.23193 -39.14774 -37.58019 -36.27058 -35.24646 -33.28856 -32.86089 -30.98504
-30.76834 -29.88916 -27.82243 -25.66799 -25.53701 -25.01292 -24.28734 -22.82519
-22.00981 -20.39654 -20.04964 -18.71483 -18.06430 -17.44229 -16.91582 -16.26057
-15.77026 -15.56489 -15.14478 -14.81358 -14.69012 -14.56728 -14.09107 -13.91133
-13.68067 -13.39601 -13.33972 -13.04305 -12.88966 -12.81477 -12.46752 -12.24641
-12.14745 -11.98705 -11.75785 -11.36903 -11.33284 -11.15852 -10.86271 -10.82147
-10.66561 -10.62454 -10.33428 -10.17459 -10.10708 -9.67532 -9.57579 -9.25213
-8.96547 -8.87288 -8.74357 -8.73048 -8.37608 -8.10218 -5.98417 -4.08111
1.30246 1.35658 3.16666 3.29406 3.37918 3.43183 3.71527 3.72356
4.20731 4.41679 4.43349 4.60436 4.77455 4.89016 4.93881 5.05201
5.12767 5.18836 5.23300 5.27897 5.28327 5.41190 5.47400 5.54903
5.66490 5.69641 5.87998 5.94935 5.99341 6.05336 6.28421 6.41699
6.42626 6.47344 6.55726 6.57277 6.78209 6.86150 6.89397 6.94808
6.98281 7.08934 7.18401 7.39284 7.48848 7.52188 7.61360 7.73959
8.06123 8.17641 8.43276 8.58978 8.92190 9.14783 9.57434 11.02988
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.013754 B = 0.003002 C = 0.002687
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2035.337103 B = 9325.884700 C =10418.521322
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.057 4.057
3 H 0.093 0.907
4 C -0.072 4.072
5 C -0.109 4.109
6 C -0.116 4.116
7 C -0.125 4.125
8 C -0.118 4.118
9 C -0.118 4.118
10 C 0.180 3.820
11 H 0.098 0.902
12 C 0.060 3.940
13 O -0.568 6.568
14 N -0.738 5.738
15 C 0.700 3.300
16 O -0.606 6.606
17 N -0.733 5.733
18 C 0.152 3.848
19 C 0.056 3.944
20 C -0.129 4.129
21 C -0.128 4.128
22 C -0.503 4.503
23 H 0.058 0.942
24 C 0.065 3.935
25 N -0.886 5.886
26 Si 0.892 3.108
27 H -0.273 1.273
28 H -0.285 1.285
29 H -0.285 1.285
30 H 0.060 0.940
31 H 0.062 0.938
32 H 0.057 0.943
33 H 0.118 0.882
34 H 0.119 0.881
35 H 0.118 0.882
36 H 0.119 0.881
37 H 0.120 0.880
38 H 0.052 0.948
39 H 0.054 0.946
40 H 0.375 0.625
41 H 0.395 0.605
42 H 0.393 0.607
43 H 0.050 0.950
44 H 0.050 0.950
45 H 0.006 0.994
46 H 0.084 0.916
47 H 0.025 0.975
48 H 0.025 0.975
49 H 0.084 0.916
50 H 0.005 0.995
51 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.035 9.064 8.898 22.883
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.076 4.076
3 H 0.111 0.889
4 C -0.072 4.072
5 C -0.127 4.127
6 C -0.135 4.135
7 C -0.143 4.143
8 C -0.136 4.136
9 C -0.136 4.136
10 C 0.073 3.927
11 H 0.116 0.884
12 C -0.019 4.019
13 O -0.372 6.372
14 N -0.393 5.393
15 C 0.400 3.600
16 O -0.486 6.486
17 N -0.386 5.386
18 C 0.029 3.971
19 C 0.055 3.945
20 C -0.186 4.186
21 C -0.186 4.186
22 C -0.542 4.542
23 H 0.076 0.924
24 C -0.136 4.136
25 N -0.525 5.525
26 Si 0.720 3.280
27 H -0.198 1.198
28 H -0.211 1.211
29 H -0.211 1.211
30 H 0.079 0.921
31 H 0.081 0.919
32 H 0.077 0.923
33 H 0.136 0.864
34 H 0.137 0.863
35 H 0.136 0.864
36 H 0.137 0.863
37 H 0.138 0.862
38 H 0.070 0.930
39 H 0.073 0.927
40 H 0.222 0.778
41 H 0.228 0.772
42 H 0.227 0.773
43 H 0.069 0.931
44 H 0.069 0.931
45 H 0.025 0.975
46 H 0.103 0.897
47 H 0.045 0.955
48 H 0.045 0.955
49 H 0.103 0.897
50 H 0.024 0.976
51 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -19.124 8.084 8.915 22.595
hybrid contribution 0.858 0.014 -0.582 1.037
sum -18.266 8.097 8.332 21.648
Atomic orbital electron populations
1.21809 0.93449 1.02215 1.02253 1.20374 0.96304 0.99995 0.90887
0.88913 1.19765 0.97720 0.94104 0.95568 1.20972 1.00135 0.94177
0.97435 1.21136 0.98099 0.99745 0.94471 1.21132 0.98983 0.94734
0.99427 1.21115 0.99871 0.94903 0.97749 1.21041 0.98421 0.99766
0.94355 1.20826 0.80281 0.99224 0.92337 0.88447 1.22741 0.97720
0.82454 0.98960 1.86453 1.81522 1.21269 1.48002 1.44976 1.05966
1.31945 1.56381 1.16058 0.82442 0.81595 0.79906 1.90854 1.67585
1.41206 1.48921 1.45475 1.03832 1.33712 1.55625 1.21542 0.93192
0.88072 0.94303 1.18364 0.87708 0.94714 0.93716 1.21807 1.03625
0.95615 0.97602 1.21799 1.03535 0.96919 0.96347 1.21032 0.91123
1.11410 1.30644 0.92400 1.24880 0.97534 0.95835 0.95313 1.69819
1.07022 1.33898 1.41740 0.86528 0.79797 0.81963 0.79664 1.19757
1.21105 1.21095 0.92107 0.91894 0.92349 0.86358 0.86274 0.86356
0.86254 0.86234 0.93004 0.92738 0.77817 0.77206 0.77253 0.93117
0.93133 0.97549 0.89702 0.95537 0.95540 0.89733 0.97554 0.93130
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.08 8.46 37.16 0.31 -0.77 16
2 C -0.06 -0.54 2.03 -91.77 -0.19 -0.73 16
3 H 0.09 0.91 7.26 -51.93 -0.38 0.53 16
4 C -0.07 -0.76 4.33 -104.63 -0.45 -1.21 16
5 C -0.11 -1.24 8.80 -39.59 -0.35 -1.58 16
6 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16
7 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16
8 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16
9 C -0.12 -1.21 9.67 -39.58 -0.38 -1.59 16
10 C 0.18 2.13 1.72 -67.93 -0.12 2.01 16
11 H 0.10 1.30 6.73 -51.93 -0.35 0.95 16
12 C 0.06 0.65 6.40 37.16 0.24 0.88 16
13 O -0.57 -5.59 12.71 -35.23 -0.45 -6.04 16
14 N -0.74 -10.34 4.56 -58.68 -0.27 -10.61 16
15 C 0.70 12.87 8.53 -86.92 -0.74 12.12 16
16 O -0.61 -13.18 16.01 5.29 0.08 -13.09 16
17 N -0.73 -13.81 4.96 -65.23 -0.32 -14.14 16
18 C 0.15 3.37 4.50 -4.04 -0.02 3.35 16
19 C 0.06 1.32 0.50 -155.66 -0.08 1.25 16
20 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16
21 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16
22 C -0.50 -13.43 8.01 -34.44 -0.28 -13.71 16
23 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16
24 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16
25 N -0.89 -23.92 9.35 55.43 0.52 -23.40 16
26 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16
27 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16
28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.06 0.44 6.90 -51.92 -0.36 0.08 16
32 H 0.06 0.44 7.76 -51.93 -0.40 0.04 16
33 H 0.12 1.27 7.20 -52.48 -0.38 0.89 16
34 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16
35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16
36 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16
37 H 0.12 1.04 7.95 -52.49 -0.42 0.62 16
38 H 0.05 0.44 6.85 -51.93 -0.36 0.08 16
39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
40 H 0.38 2.25 9.12 45.56 0.42 2.66 16
41 H 0.39 5.03 8.61 -40.82 -0.35 4.68 16
42 H 0.39 6.83 6.18 -40.82 -0.25 6.58 16
43 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16
44 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16
45 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16
46 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16
47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
48 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
49 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16
50 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16
51 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16
LS Contribution 402.35 15.07 6.06 6.06
Total: -1.00 -30.93 402.35 -9.64 -40.58
By element:
Atomic # 1 Polarization: 20.89 SS G_CDS: -7.52 Total: 13.38 kcal
Atomic # 6 Polarization: -5.96 SS G_CDS: -2.73 Total: -8.70 kcal
Atomic # 7 Polarization: -48.07 SS G_CDS: -0.07 Total: -48.15 kcal
Atomic # 8 Polarization: -18.77 SS G_CDS: -0.36 Total: -19.13 kcal
Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -30.93 -9.64 -40.58 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000590949002.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.202 kcal
(2) G-P(sol) polarization free energy of solvation -30.934 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.136 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.779 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds