Wall clock time and date at job start Tue Mar 31 2020 19:33:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09005 * 109.46620 * 2 1
4 4 C 1.50702 * 109.46987 * 119.99544 * 2 1 3
5 5 C 1.38228 * 119.99949 * 62.56062 * 4 2 1
6 6 C 1.38232 * 120.00044 * 179.79028 * 5 4 2
7 7 C 1.38241 * 120.00129 * 0.43529 * 6 5 4
8 8 C 1.38237 * 119.99466 * 359.81856 * 7 6 5
9 9 C 1.38233 * 119.99907 * 242.83219 * 4 2 1
10 10 C 1.52995 * 109.47250 * 239.99562 * 2 1 3
11 11 H 1.08990 * 109.47399 * 301.34526 * 10 2 1
12 12 C 1.53008 * 109.47043 * 61.34587 * 10 2 1
13 13 O 1.42904 * 109.46933 * 55.40571 * 12 10 2
14 14 N 1.46500 * 109.46919 * 181.34250 * 10 2 1
15 15 C 1.34782 * 119.99829 * 155.00231 * 14 10 2
16 16 O 1.21584 * 119.99826 * 0.02562 * 15 14 10
17 17 N 1.34772 * 120.00031 * 180.02562 * 15 14 10
18 18 C 1.46498 * 120.00092 * 180.02562 * 17 15 14
19 19 C 1.53004 * 109.47384 * 180.02562 * 18 17 15
20 20 C 1.53003 * 109.46820 * 300.00017 * 19 18 17
21 21 C 1.53001 * 109.47307 * 59.99682 * 19 18 17
22 22 C 1.50696 * 109.47114 * 180.02562 * 19 18 17
23 23 H 1.07993 * 120.00420 * 359.97438 * 22 19 18
24 24 C 1.37877 * 119.99659 * 179.97438 * 22 19 18
25 25 N 1.31511 * 120.00308 * 359.97438 * 24 22 19
26 26 Si 1.86802 * 120.00125 * 179.97438 * 24 22 19
27 27 H 1.48509 * 109.46980 * 0.02562 * 26 24 22
28 28 H 1.48502 * 109.47137 * 119.99772 * 26 24 22
29 29 H 1.48494 * 109.47667 * 240.00265 * 26 24 22
30 30 H 1.08996 * 109.47294 * 293.87552 * 1 2 3
31 31 H 1.09008 * 109.47006 * 53.87384 * 1 2 3
32 32 H 1.08998 * 109.47023 * 173.87513 * 1 2 3
33 33 H 1.08005 * 120.00294 * 0.02562 * 5 4 2
34 34 H 1.08010 * 120.00294 * 180.27661 * 6 5 4
35 35 H 1.07996 * 119.99808 * 179.83508 * 7 6 5
36 36 H 1.07999 * 119.99818 * 179.97438 * 8 7 6
37 37 H 1.07998 * 120.00160 * 359.97438 * 9 4 2
38 38 H 1.08998 * 109.46977 * 295.40408 * 12 10 2
39 39 H 1.09003 * 109.46945 * 175.40381 * 12 10 2
40 40 H 0.96702 * 113.99298 * 180.02562 * 13 12 10
41 41 H 0.96994 * 120.00315 * 335.00179 * 14 10 2
42 42 H 0.97003 * 119.99876 * 359.97438 * 17 15 14
43 43 H 1.08998 * 109.47280 * 299.99984 * 18 17 15
44 44 H 1.09001 * 109.47213 * 60.00217 * 18 17 15
45 45 H 1.08994 * 109.47386 * 59.99977 * 20 19 18
46 46 H 1.09004 * 109.47100 * 179.97438 * 20 19 18
47 47 H 1.09001 * 109.47309 * 299.99597 * 20 19 18
48 48 H 1.09003 * 109.46843 * 59.99976 * 21 19 18
49 49 H 1.08991 * 109.47108 * 180.02562 * 21 19 18
50 50 H 1.09000 * 109.47182 * 300.00616 * 21 19 18
51 51 H 0.97001 * 120.00400 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 1.2305
5 6 1.7426 -2.0481 1.4230
6 6 2.2070 -2.7008 2.5496
7 6 2.9536 -2.0134 3.4882
8 6 3.2388 -0.6741 3.2983
9 6 2.7780 -0.0226 2.1696
10 6 2.0400 -0.7213 -1.2491
11 1 1.6572 -1.7417 -1.2613
12 6 1.5579 0.0192 -2.4983
13 8 1.9697 1.3859 -2.4304
14 7 3.5047 -0.7494 -1.2330
15 6 4.1676 -1.7131 -1.9026
16 8 3.5501 -2.5589 -2.5203
17 7 5.5150 -1.7392 -1.8873
18 6 6.2356 -2.7864 -2.6155
19 6 7.7421 -2.5884 -2.4357
20 6 8.1450 -1.2173 -2.9824
21 6 8.0930 -2.6675 -0.9486
22 6 8.4833 -3.6652 -3.1853
23 1 7.9349 -4.4160 -3.7347
24 6 9.8618 -3.6918 -3.1698
25 7 10.5297 -2.7773 -2.5012
26 14 10.7807 -5.0270 -4.0984
27 1 9.8055 -5.9271 -4.7651
28 1 11.6582 -4.4040 -5.1217
29 1 11.6087 -5.8112 -3.1474
30 1 -0.3634 0.4159 0.9397
31 1 -0.3633 0.6059 -0.8301
32 1 -0.3633 -1.0218 -0.1096
33 1 1.1566 -2.5845 0.6913
34 1 1.9844 -3.7473 2.6978
35 1 3.3141 -2.5226 4.3697
36 1 3.8217 -0.1369 4.0318
37 1 3.0010 1.0236 2.0212
38 1 0.4704 -0.0304 -2.5529
39 1 1.9878 -0.4463 -3.3852
40 1 1.6974 1.9169 -3.1914
41 1 3.9973 -0.0744 -0.7405
42 1 6.0076 -1.0642 -1.3947
43 1 5.9489 -3.7631 -2.2257
44 1 5.9854 -2.7302 -3.6749
45 1 7.6089 -0.4382 -2.4407
46 1 9.2182 -1.0760 -2.8539
47 1 7.8951 -1.1609 -4.0419
48 1 7.8059 -3.6443 -0.5591
49 1 9.1661 -2.5260 -0.8205
50 1 7.5568 -1.8884 -0.4067
51 1 11.4994 -2.7962 -2.4900
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000590949002.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:33:05
Heat of formation + Delta-G solvation = -89.558496 kcal
Electronic energy + Delta-G solvation = -29889.971489 eV
Core-core repulsion = 25980.893213 eV
Total energy + Delta-G solvation = -3909.078276 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-41.37137 -40.26363 -38.66871 -37.88624 -36.12716 -34.97715 -34.12753 -32.56362
-31.75868 -30.76049 -28.75241 -27.56319 -27.41580 -26.56975 -25.36681 -23.64626
-22.93682 -21.78004 -20.97832 -20.54533 -19.40939 -18.34629 -17.80730 -17.72951
-17.30212 -16.61024 -16.54891 -16.28349 -16.00544 -15.48182 -15.28533 -15.18099
-14.92895 -14.64752 -14.48816 -14.22511 -14.15273 -13.99447 -13.80590 -13.38246
-13.18826 -13.10104 -12.99219 -12.84294 -12.69387 -12.55930 -12.53677 -12.24940
-12.13657 -12.13256 -11.61608 -11.48783 -11.46946 -11.32676 -11.13942 -10.85288
-10.69300 -10.40124 -10.22339 -9.76903 -9.62340 -9.54190 -8.01678 -6.17345
0.50168 0.55134 1.41699 1.45539 1.55206 1.84680 2.25913 2.46812
2.91569 3.21808 3.39203 3.45818 3.64356 3.81715 4.07799 4.18287
4.29268 4.33172 4.36415 4.42696 4.47967 4.54060 4.54483 4.64653
4.69316 4.71938 4.72641 4.85216 4.98363 5.00658 5.06251 5.11660
5.14750 5.20307 5.20577 5.24901 5.34594 5.39592 5.59956 5.63512
5.66568 5.67364 5.67802 5.68059 5.78887 6.11305 6.14742 6.17799
6.22362 6.44291 6.86957 6.90968 7.19305 7.50327 7.68771 8.97547
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.013754 B = 0.003002 C = 0.002687
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2035.337103 B = 9325.884700 C =10418.521322
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.043 4.043
3 H 0.098 0.902
4 C -0.078 4.078
5 C -0.126 4.126
6 C -0.133 4.133
7 C -0.136 4.136
8 C -0.126 4.126
9 C -0.124 4.124
10 C 0.174 3.826
11 H 0.080 0.920
12 C 0.068 3.932
13 O -0.574 6.574
14 N -0.720 5.720
15 C 0.699 3.301
16 O -0.641 6.641
17 N -0.728 5.728
18 C 0.170 3.830
19 C 0.052 3.948
20 C -0.117 4.117
21 C -0.116 4.116
22 C -0.527 4.527
23 H 0.044 0.956
24 C 0.028 3.972
25 N -0.899 5.899
26 Si 0.946 3.054
27 H -0.275 1.275
28 H -0.281 1.281
29 H -0.281 1.281
30 H 0.067 0.933
31 H 0.075 0.925
32 H 0.057 0.943
33 H 0.116 0.884
34 H 0.126 0.874
35 H 0.133 0.867
36 H 0.138 0.862
37 H 0.137 0.863
38 H 0.080 0.920
39 H 0.025 0.975
40 H 0.394 0.606
41 H 0.404 0.596
42 H 0.402 0.598
43 H 0.032 0.968
44 H 0.034 0.966
45 H 0.034 0.966
46 H 0.063 0.937
47 H 0.017 0.983
48 H 0.016 0.984
49 H 0.062 0.938
50 H 0.033 0.967
51 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.803 10.650 9.676 24.479
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.062 4.062
3 H 0.116 0.884
4 C -0.078 4.078
5 C -0.144 4.144
6 C -0.151 4.151
7 C -0.154 4.154
8 C -0.143 4.143
9 C -0.142 4.142
10 C 0.069 3.931
11 H 0.098 0.902
12 C -0.011 4.011
13 O -0.382 6.382
14 N -0.374 5.374
15 C 0.399 3.601
16 O -0.524 6.524
17 N -0.383 5.383
18 C 0.046 3.954
19 C 0.052 3.948
20 C -0.175 4.175
21 C -0.174 4.174
22 C -0.566 4.566
23 H 0.062 0.938
24 C -0.172 4.172
25 N -0.538 5.538
26 Si 0.773 3.227
27 H -0.200 1.200
28 H -0.207 1.207
29 H -0.207 1.207
30 H 0.086 0.914
31 H 0.093 0.907
32 H 0.076 0.924
33 H 0.134 0.866
34 H 0.144 0.856
35 H 0.151 0.849
36 H 0.156 0.844
37 H 0.155 0.845
38 H 0.098 0.902
39 H 0.044 0.956
40 H 0.243 0.757
41 H 0.239 0.761
42 H 0.239 0.761
43 H 0.051 0.949
44 H 0.052 0.948
45 H 0.053 0.947
46 H 0.081 0.919
47 H 0.036 0.964
48 H 0.035 0.965
49 H 0.081 0.919
50 H 0.052 0.948
51 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -19.913 9.725 9.714 24.197
hybrid contribution 1.051 -0.447 -0.796 1.392
sum -18.863 9.279 8.918 22.835
Atomic orbital electron populations
1.21805 0.91888 1.02588 1.03161 1.20293 0.97439 0.99460 0.89044
0.88390 1.19915 0.97861 0.93933 0.96137 1.21107 1.00745 0.94830
0.97719 1.21363 0.98553 1.00404 0.94788 1.21403 0.98894 0.95229
0.99862 1.21424 0.99788 0.94928 0.98199 1.21308 0.98019 1.00676
0.94207 1.21023 0.78626 0.99085 0.94396 0.90164 1.22558 0.99065
0.82688 0.96782 1.86401 1.81842 1.20702 1.49262 1.44876 1.06964
1.30648 1.54933 1.16168 0.82070 0.81955 0.79928 1.90832 1.68180
1.42861 1.50544 1.45202 1.04168 1.33266 1.55639 1.21076 0.92538
0.88230 0.93568 1.18354 0.88297 0.94378 0.93810 1.21638 1.02422
0.96018 0.97442 1.21628 1.02320 0.97313 0.96171 1.21290 0.91810
1.12188 1.31324 0.93765 1.25456 0.98127 0.97546 0.96036 1.69916
1.07170 1.34632 1.42075 0.85695 0.78564 0.79822 0.78654 1.20009
1.20662 1.20693 0.91423 0.90659 0.92381 0.86583 0.85588 0.84932
0.84393 0.84476 0.90236 0.95617 0.75687 0.76086 0.76148 0.94941
0.94792 0.94744 0.91866 0.96374 0.96517 0.91880 0.94820 0.93038
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.81 8.46 71.98 0.61 -1.20 16
2 C -0.04 -0.74 2.03 -11.54 -0.02 -0.77 16
3 H 0.10 1.62 7.26 -2.38 -0.02 1.60 16
4 C -0.08 -1.55 4.33 -19.87 -0.09 -1.64 16
5 C -0.13 -2.79 8.80 22.27 0.20 -2.59 16
6 C -0.13 -2.89 10.05 22.27 0.22 -2.66 16
7 C -0.14 -2.71 10.05 22.27 0.22 -2.49 16
8 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16
9 C -0.12 -2.29 9.67 22.27 0.22 -2.07 16
10 C 0.17 3.91 1.72 44.99 0.08 3.99 16
11 H 0.08 2.12 6.73 -2.39 -0.02 2.11 16
12 C 0.07 1.35 6.40 71.98 0.46 1.81 16
13 O -0.57 -9.84 12.71 -148.98 -1.89 -11.74 16
14 N -0.72 -19.31 4.56 -457.82 -2.09 -21.40 16
15 C 0.70 25.41 8.53 179.05 1.53 26.94 16
16 O -0.64 -28.27 16.01 -3.98 -0.06 -28.33 16
17 N -0.73 -26.94 4.96 -478.54 -2.37 -29.31 16
18 C 0.17 7.63 4.50 86.38 0.39 8.01 16
19 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16
20 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16
21 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16
22 C -0.53 -28.49 8.01 25.60 0.21 -28.29 16
23 H 0.04 2.45 7.74 -2.91 -0.02 2.42 16
24 C 0.03 1.50 5.15 84.66 0.44 1.93 16
25 N -0.90 -48.48 9.35 21.45 0.20 -48.28 16
26 Si 0.95 43.13 29.54 68.60 2.03 45.16 16
27 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
28 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
29 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16
31 H 0.07 0.82 6.90 -2.38 -0.02 0.80 16
32 H 0.06 0.78 7.76 -2.39 -0.02 0.76 16
33 H 0.12 2.51 7.20 -2.91 -0.02 2.49 16
34 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16
35 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16
36 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16
37 H 0.14 1.97 7.95 -2.91 -0.02 1.95 16
38 H 0.08 1.14 6.85 -2.39 -0.02 1.12 16
39 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16
40 H 0.39 3.64 9.12 -74.06 -0.68 2.97 16
41 H 0.40 9.45 8.61 -92.71 -0.80 8.65 16
42 H 0.40 13.25 6.18 -92.71 -0.57 12.67 16
43 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16
44 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16
45 H 0.03 1.33 6.86 -2.39 -0.02 1.31 16
46 H 0.06 3.18 6.07 -2.38 -0.01 3.17 16
47 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16
48 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16
49 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16
50 H 0.03 1.31 6.86 -2.39 -0.02 1.30 16
51 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16
Total: -1.00 -66.48 402.35 0.52 -65.96
By element:
Atomic # 1 Polarization: 37.24 SS G_CDS: -1.10 Total: 36.14 kcal
Atomic # 6 Polarization: -14.01 SS G_CDS: 5.81 Total: -8.20 kcal
Atomic # 7 Polarization: -94.73 SS G_CDS: -4.26 Total: -98.99 kcal
Atomic # 8 Polarization: -38.11 SS G_CDS: -1.96 Total: -40.07 kcal
Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal
Total: -66.48 0.52 -65.96 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000590949002.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.599 kcal
(2) G-P(sol) polarization free energy of solvation -66.482 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.082 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.959 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.558 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds