Wall clock time and date at job start Tue Mar 31 2020 19:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47251 * 2 1 4 4 C 1.50701 * 109.47182 * 239.99904 * 2 1 3 5 5 C 1.38230 * 120.00189 * 300.34431 * 4 2 1 6 6 C 1.38231 * 120.00355 * 179.78812 * 5 4 2 7 7 C 1.38240 * 119.99775 * 0.43574 * 6 5 4 8 8 C 1.38236 * 119.99881 * 359.81267 * 7 6 5 9 9 C 1.38231 * 120.00128 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.47474 * 120.00118 * 2 1 3 11 11 H 1.09006 * 109.46916 * 56.87926 * 10 2 1 12 12 C 1.53004 * 109.46998 * 296.88473 * 10 2 1 13 13 O 1.42901 * 109.47143 * 304.87196 * 12 10 2 14 14 N 1.46495 * 109.47270 * 176.88327 * 10 2 1 15 15 C 1.34781 * 119.99527 * 205.00018 * 14 10 2 16 16 O 1.21581 * 120.00640 * 359.97438 * 15 14 10 17 17 N 1.34783 * 119.99326 * 179.72534 * 15 14 10 18 18 C 1.46508 * 119.99490 * 180.27147 * 17 15 14 19 19 C 1.53004 * 109.46790 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47255 * 300.00385 * 19 18 17 21 21 C 1.53001 * 109.47140 * 60.00321 * 19 18 17 22 22 C 1.50700 * 109.47038 * 180.02562 * 19 18 17 23 23 H 1.08004 * 119.99850 * 359.97438 * 22 19 18 24 24 C 1.37871 * 120.00212 * 180.02562 * 22 19 18 25 25 N 1.31516 * 119.99753 * 359.97438 * 24 22 19 26 26 Si 1.86795 * 120.00316 * 179.97438 * 24 22 19 27 27 H 1.48501 * 109.46944 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47550 * 119.99526 * 26 24 22 29 29 H 1.48499 * 109.47275 * 239.99519 * 26 24 22 30 30 H 1.08996 * 109.47446 * 185.77587 * 1 2 3 31 31 H 1.09000 * 109.46925 * 305.77654 * 1 2 3 32 32 H 1.09002 * 109.47008 * 65.77477 * 1 2 3 33 33 H 1.08003 * 119.99771 * 359.97438 * 5 4 2 34 34 H 1.08005 * 120.00487 * 180.27038 * 6 5 4 35 35 H 1.08001 * 119.99720 * 179.83557 * 7 6 5 36 36 H 1.08004 * 119.99641 * 180.02562 * 8 7 6 37 37 H 1.08001 * 119.99996 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.47235 * 64.86828 * 12 10 2 39 39 H 1.08997 * 109.47301 * 184.87426 * 12 10 2 40 40 H 0.96692 * 114.00562 * 180.02562 * 13 12 10 41 41 H 0.97000 * 120.00572 * 25.00242 * 14 10 2 42 42 H 0.96998 * 120.00143 * 0.27592 * 17 15 14 43 43 H 1.08993 * 109.47206 * 299.99964 * 18 17 15 44 44 H 1.09001 * 109.46834 * 60.00202 * 18 17 15 45 45 H 1.09004 * 109.47257 * 60.00056 * 20 19 18 46 46 H 1.08997 * 109.47342 * 180.02562 * 20 19 18 47 47 H 1.09001 * 109.47137 * 300.00161 * 20 19 18 48 48 H 1.09000 * 109.46906 * 59.99722 * 21 19 18 49 49 H 1.08997 * 109.47264 * 179.97438 * 21 19 18 50 50 H 1.08998 * 109.47025 * 300.00213 * 21 19 18 51 51 H 0.97000 * 120.00139 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6926 -2.0317 -1.4528 6 6 2.1497 -2.6821 -2.5837 7 6 2.9542 -2.0138 -3.4877 8 6 3.2982 -0.6940 -3.2627 9 6 2.8374 -0.0423 -2.1341 10 6 2.0401 -0.7213 1.2492 11 1 1.6318 -1.7316 1.2776 12 6 1.5951 0.0438 2.4972 13 8 2.0345 1.4006 2.4061 14 7 3.5031 -0.7866 1.2122 15 6 4.1513 -1.7600 1.8822 16 8 3.5219 -2.5836 2.5177 17 7 5.4970 -1.8234 1.8436 18 6 6.2013 -2.8850 2.5671 19 6 7.7093 -2.7298 2.3595 20 6 8.0315 -2.8291 0.8672 21 6 8.1593 -1.3667 2.8889 22 6 8.4337 -3.8222 3.1031 23 1 7.8746 -4.5537 3.6677 24 6 9.8103 -3.8872 3.0636 25 7 10.4912 -2.9961 2.3765 26 14 10.7084 -5.2407 3.9859 27 1 9.7208 -6.1086 4.6763 28 1 11.4974 -6.0542 3.0264 29 1 11.6209 -4.6351 4.9888 30 1 -0.3634 -1.0224 0.1034 31 1 -0.3633 0.6008 0.8338 32 1 -0.3633 0.4217 -0.9372 33 1 1.0674 -2.5551 -0.7445 34 1 1.8807 -3.7132 -2.7596 35 1 3.3135 -2.5227 -4.3699 36 1 3.9263 -0.1717 -3.9693 37 1 3.1065 0.9887 -1.9582 38 1 0.5079 0.0182 2.5708 39 1 2.0302 -0.4203 3.3823 40 1 1.7873 1.9459 3.1654 41 1 4.0054 -0.1294 0.7055 42 1 5.9992 -1.1661 1.3370 43 1 5.9714 -2.8145 3.6302 44 1 5.8810 -3.8561 2.1896 45 1 7.5075 -2.0392 0.3289 46 1 9.1058 -2.7190 0.7193 47 1 7.7109 -3.8002 0.4900 48 1 7.9297 -1.2960 3.9521 49 1 9.2336 -1.2563 2.7414 50 1 7.6353 -0.5769 2.3507 51 1 11.4597 -3.0420 2.3484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590949003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:10 Heat of formation + Delta-G solvation = -69.868813 kcal Electronic energy + Delta-G solvation = -29909.475961 eV Core-core repulsion = 26001.251494 eV Total energy + Delta-G solvation = -3908.224468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.23149 -39.14345 -37.57655 -36.27061 -35.24877 -33.28741 -32.85873 -30.98181 -30.77118 -29.88494 -27.82751 -25.66821 -25.53506 -25.00773 -24.28949 -22.80323 -22.01537 -20.39703 -20.05311 -18.71408 -18.05944 -17.44492 -16.92370 -16.25443 -15.77014 -15.56665 -15.13904 -14.81733 -14.69040 -14.55864 -14.10802 -13.89507 -13.68499 -13.39378 -13.35491 -13.01450 -12.89237 -12.81421 -12.46886 -12.23978 -12.14677 -11.99658 -11.74861 -11.36314 -11.33303 -11.15851 -10.86192 -10.82118 -10.67008 -10.62457 -10.33422 -10.17463 -10.10966 -9.67480 -9.57564 -9.25183 -8.96304 -8.87120 -8.74070 -8.72950 -8.37555 -8.10165 -5.98404 -4.08092 1.30540 1.35966 3.16703 3.29411 3.37934 3.43216 3.71673 3.72516 4.20567 4.41738 4.43926 4.61001 4.77224 4.88884 4.94176 5.05461 5.12758 5.19273 5.23239 5.27520 5.28339 5.41483 5.47739 5.55322 5.66785 5.69555 5.88224 5.95026 5.99445 6.05636 6.28464 6.42023 6.42668 6.47613 6.55938 6.57400 6.78255 6.86137 6.89430 6.95112 6.98354 7.08951 7.18435 7.39339 7.48834 7.52212 7.61333 7.73973 8.06208 8.17645 8.43310 8.59010 8.92178 9.14830 9.57452 11.03010 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.003018 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.938113 B = 9275.505938 C =10368.389457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 H 0.093 0.907 4 C -0.071 4.071 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.125 4.125 8 C -0.118 4.118 9 C -0.118 4.118 10 C 0.180 3.820 11 H 0.098 0.902 12 C 0.061 3.939 13 O -0.568 6.568 14 N -0.738 5.738 15 C 0.700 3.300 16 O -0.606 6.606 17 N -0.733 5.733 18 C 0.152 3.848 19 C 0.056 3.944 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.503 4.503 23 H 0.058 0.942 24 C 0.065 3.935 25 N -0.886 5.886 26 Si 0.892 3.108 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.285 1.285 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.376 0.624 41 H 0.395 0.605 42 H 0.393 0.607 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.005 0.995 46 H 0.084 0.916 47 H 0.025 0.975 48 H 0.025 0.975 49 H 0.084 0.916 50 H 0.006 0.994 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.840 9.531 -8.670 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 H 0.111 0.889 4 C -0.071 4.071 5 C -0.127 4.127 6 C -0.135 4.135 7 C -0.143 4.143 8 C -0.136 4.136 9 C -0.136 4.136 10 C 0.074 3.926 11 H 0.115 0.885 12 C -0.019 4.019 13 O -0.373 6.373 14 N -0.393 5.393 15 C 0.400 3.600 16 O -0.486 6.486 17 N -0.387 5.387 18 C 0.029 3.971 19 C 0.055 3.945 20 C -0.186 4.186 21 C -0.187 4.187 22 C -0.542 4.542 23 H 0.076 0.924 24 C -0.136 4.136 25 N -0.525 5.525 26 Si 0.721 3.279 27 H -0.198 1.198 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.222 0.778 41 H 0.228 0.772 42 H 0.227 0.773 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.024 0.976 46 H 0.103 0.897 47 H 0.045 0.955 48 H 0.045 0.955 49 H 0.103 0.897 50 H 0.025 0.975 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.954 8.553 -8.676 22.532 hybrid contribution 0.866 -0.004 0.571 1.038 sum -18.088 8.549 -8.104 21.586 Atomic orbital electron populations 1.21810 0.93474 1.02220 1.02247 1.20381 0.96306 1.00019 0.90892 0.88873 1.19763 0.97461 0.94250 0.95664 1.20967 1.00232 0.94246 0.97285 1.21133 0.97979 0.99738 0.94628 1.21133 0.98583 0.94944 0.99597 1.21117 0.99854 0.95009 0.97634 1.21047 0.98074 0.99850 0.94609 1.20823 0.80462 0.99011 0.92350 0.88461 1.22736 0.97560 0.82641 0.98919 1.86447 1.81756 1.21554 1.47509 1.44976 1.06174 1.32508 1.55609 1.16061 0.82496 0.81431 0.80016 1.90854 1.66770 1.42841 1.48095 1.45480 1.04013 1.34075 1.55085 1.21544 0.93479 0.87681 0.94404 1.18363 0.87675 0.94762 0.93702 1.21800 1.03566 0.96832 0.96407 1.21805 1.03709 0.95496 0.97640 1.21033 0.91295 1.11636 1.30234 0.92404 1.24880 0.97481 0.95922 0.95290 1.69822 1.06718 1.34766 1.41175 0.86525 0.79711 0.82056 0.79645 1.19760 1.21097 1.21107 0.92335 0.91931 0.92093 0.86369 0.86285 0.86356 0.86242 0.86227 0.93018 0.92728 0.77808 0.77208 0.77256 0.93132 0.93118 0.97554 0.89722 0.95547 0.95543 0.89702 0.97539 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.48 37.16 0.32 -0.77 16 2 C -0.06 -0.55 2.05 -91.77 -0.19 -0.73 16 3 H 0.09 0.91 7.19 -51.93 -0.37 0.54 16 4 C -0.07 -0.76 4.26 -104.62 -0.45 -1.21 16 5 C -0.11 -1.23 8.80 -39.59 -0.35 -1.58 16 6 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 7 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 8 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 9 C -0.12 -1.22 9.67 -39.58 -0.38 -1.60 16 10 C 0.18 2.13 1.73 -67.93 -0.12 2.01 16 11 H 0.10 1.30 6.95 -51.93 -0.36 0.94 16 12 C 0.06 0.65 6.44 37.16 0.24 0.89 16 13 O -0.57 -5.59 12.67 -35.23 -0.45 -6.03 16 14 N -0.74 -10.35 4.53 -58.67 -0.27 -10.62 16 15 C 0.70 12.88 8.53 -86.91 -0.74 12.14 16 16 O -0.61 -13.19 16.01 5.29 0.08 -13.11 16 17 N -0.73 -13.83 4.96 -65.22 -0.32 -14.15 16 18 C 0.15 3.37 4.50 -4.04 -0.02 3.35 16 19 C 0.06 1.32 0.50 -155.66 -0.08 1.25 16 20 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 21 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 22 C -0.50 -13.43 8.01 -34.44 -0.28 -13.70 16 23 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 24 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 25 N -0.89 -23.91 9.35 55.43 0.52 -23.39 16 26 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 H 0.06 0.44 7.58 -51.93 -0.39 0.05 16 31 H 0.06 0.43 6.93 -51.93 -0.36 0.08 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.12 1.25 7.21 -52.48 -0.38 0.88 16 34 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.12 1.05 7.95 -52.49 -0.42 0.63 16 38 H 0.05 0.43 6.90 -51.93 -0.36 0.08 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.38 2.24 9.12 45.56 0.42 2.66 16 41 H 0.39 5.04 8.57 -40.82 -0.35 4.69 16 42 H 0.39 6.83 6.18 -40.82 -0.25 6.58 16 43 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 46 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 50 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 51 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -30.94 402.31 -9.63 -40.57 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -7.52 Total: 13.39 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.73 Total: -8.68 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.07 Total: -48.16 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.36 Total: -19.14 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.94 -9.63 -40.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.295 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds