Wall clock time and date at job start Tue Mar 31 2020 19:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47251 * 2 1 4 4 C 1.50701 * 109.47182 * 239.99904 * 2 1 3 5 5 C 1.38230 * 120.00189 * 300.34431 * 4 2 1 6 6 C 1.38231 * 120.00355 * 179.78812 * 5 4 2 7 7 C 1.38240 * 119.99775 * 0.43574 * 6 5 4 8 8 C 1.38236 * 119.99881 * 359.81267 * 7 6 5 9 9 C 1.38231 * 120.00128 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.47474 * 120.00118 * 2 1 3 11 11 H 1.09006 * 109.46916 * 56.87926 * 10 2 1 12 12 C 1.53004 * 109.46998 * 296.88473 * 10 2 1 13 13 O 1.42901 * 109.47143 * 304.87196 * 12 10 2 14 14 N 1.46495 * 109.47270 * 176.88327 * 10 2 1 15 15 C 1.34781 * 119.99527 * 205.00018 * 14 10 2 16 16 O 1.21581 * 120.00640 * 359.97438 * 15 14 10 17 17 N 1.34783 * 119.99326 * 179.72534 * 15 14 10 18 18 C 1.46508 * 119.99490 * 180.27147 * 17 15 14 19 19 C 1.53004 * 109.46790 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47255 * 300.00385 * 19 18 17 21 21 C 1.53001 * 109.47140 * 60.00321 * 19 18 17 22 22 C 1.50700 * 109.47038 * 180.02562 * 19 18 17 23 23 H 1.08004 * 119.99850 * 359.97438 * 22 19 18 24 24 C 1.37871 * 120.00212 * 180.02562 * 22 19 18 25 25 N 1.31516 * 119.99753 * 359.97438 * 24 22 19 26 26 Si 1.86795 * 120.00316 * 179.97438 * 24 22 19 27 27 H 1.48501 * 109.46944 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47550 * 119.99526 * 26 24 22 29 29 H 1.48499 * 109.47275 * 239.99519 * 26 24 22 30 30 H 1.08996 * 109.47446 * 185.77587 * 1 2 3 31 31 H 1.09000 * 109.46925 * 305.77654 * 1 2 3 32 32 H 1.09002 * 109.47008 * 65.77477 * 1 2 3 33 33 H 1.08003 * 119.99771 * 359.97438 * 5 4 2 34 34 H 1.08005 * 120.00487 * 180.27038 * 6 5 4 35 35 H 1.08001 * 119.99720 * 179.83557 * 7 6 5 36 36 H 1.08004 * 119.99641 * 180.02562 * 8 7 6 37 37 H 1.08001 * 119.99996 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.47235 * 64.86828 * 12 10 2 39 39 H 1.08997 * 109.47301 * 184.87426 * 12 10 2 40 40 H 0.96692 * 114.00562 * 180.02562 * 13 12 10 41 41 H 0.97000 * 120.00572 * 25.00242 * 14 10 2 42 42 H 0.96998 * 120.00143 * 0.27592 * 17 15 14 43 43 H 1.08993 * 109.47206 * 299.99964 * 18 17 15 44 44 H 1.09001 * 109.46834 * 60.00202 * 18 17 15 45 45 H 1.09004 * 109.47257 * 60.00056 * 20 19 18 46 46 H 1.08997 * 109.47342 * 180.02562 * 20 19 18 47 47 H 1.09001 * 109.47137 * 300.00161 * 20 19 18 48 48 H 1.09000 * 109.46906 * 59.99722 * 21 19 18 49 49 H 1.08997 * 109.47264 * 179.97438 * 21 19 18 50 50 H 1.08998 * 109.47025 * 300.00213 * 21 19 18 51 51 H 0.97000 * 120.00139 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6926 -2.0317 -1.4528 6 6 2.1497 -2.6821 -2.5837 7 6 2.9542 -2.0138 -3.4877 8 6 3.2982 -0.6940 -3.2627 9 6 2.8374 -0.0423 -2.1341 10 6 2.0401 -0.7213 1.2492 11 1 1.6318 -1.7316 1.2776 12 6 1.5951 0.0438 2.4972 13 8 2.0345 1.4006 2.4061 14 7 3.5031 -0.7866 1.2122 15 6 4.1513 -1.7600 1.8822 16 8 3.5219 -2.5836 2.5177 17 7 5.4970 -1.8234 1.8436 18 6 6.2013 -2.8850 2.5671 19 6 7.7093 -2.7298 2.3595 20 6 8.0315 -2.8291 0.8672 21 6 8.1593 -1.3667 2.8889 22 6 8.4337 -3.8222 3.1031 23 1 7.8746 -4.5537 3.6677 24 6 9.8103 -3.8872 3.0636 25 7 10.4912 -2.9961 2.3765 26 14 10.7084 -5.2407 3.9859 27 1 9.7208 -6.1086 4.6763 28 1 11.4974 -6.0542 3.0264 29 1 11.6209 -4.6351 4.9888 30 1 -0.3634 -1.0224 0.1034 31 1 -0.3633 0.6008 0.8338 32 1 -0.3633 0.4217 -0.9372 33 1 1.0674 -2.5551 -0.7445 34 1 1.8807 -3.7132 -2.7596 35 1 3.3135 -2.5227 -4.3699 36 1 3.9263 -0.1717 -3.9693 37 1 3.1065 0.9887 -1.9582 38 1 0.5079 0.0182 2.5708 39 1 2.0302 -0.4203 3.3823 40 1 1.7873 1.9459 3.1654 41 1 4.0054 -0.1294 0.7055 42 1 5.9992 -1.1661 1.3370 43 1 5.9714 -2.8145 3.6302 44 1 5.8810 -3.8561 2.1896 45 1 7.5075 -2.0392 0.3289 46 1 9.1058 -2.7190 0.7193 47 1 7.7109 -3.8002 0.4900 48 1 7.9297 -1.2960 3.9521 49 1 9.2336 -1.2563 2.7414 50 1 7.6353 -0.5769 2.3507 51 1 11.4597 -3.0420 2.3484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590949003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:09 Heat of formation + Delta-G solvation = -89.626081 kcal Electronic energy + Delta-G solvation = -29910.332701 eV Core-core repulsion = 26001.251494 eV Total energy + Delta-G solvation = -3909.081207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.37202 -40.26049 -38.66577 -37.88530 -36.12982 -34.97687 -34.12531 -32.56257 -31.75918 -30.75927 -28.75639 -27.56344 -27.41527 -26.56739 -25.36493 -23.62607 -22.94301 -21.78118 -20.98113 -20.54562 -19.40886 -18.34510 -17.81213 -17.73406 -17.29595 -16.61229 -16.54944 -16.28289 -16.00055 -15.48418 -15.28664 -15.18010 -14.92796 -14.64741 -14.49120 -14.23638 -14.15027 -13.99569 -13.78274 -13.38171 -13.18798 -13.10106 -12.99161 -12.84874 -12.69299 -12.55901 -12.52803 -12.24932 -12.13575 -12.13086 -11.61587 -11.48923 -11.47194 -11.32761 -11.13958 -10.85372 -10.69243 -10.40071 -10.22399 -9.76719 -9.62244 -9.54099 -8.01652 -6.17310 0.50276 0.55346 1.41718 1.45570 1.55253 1.84629 2.25864 2.46855 2.91643 3.21836 3.39130 3.45705 3.65077 3.82389 4.07288 4.18543 4.29067 4.33145 4.36743 4.42714 4.47834 4.54058 4.54454 4.65123 4.69259 4.71949 4.72898 4.85138 4.98457 5.00651 5.06270 5.11726 5.15039 5.20344 5.20816 5.25073 5.34533 5.39605 5.59869 5.63648 5.66540 5.67330 5.67824 5.68245 5.79122 6.11259 6.14821 6.17994 6.22358 6.44329 6.86951 6.91064 7.19209 7.50356 7.68701 8.97579 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.003018 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.938113 B = 9275.505938 C =10368.389457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 H 0.098 0.902 4 C -0.078 4.078 5 C -0.126 4.126 6 C -0.133 4.133 7 C -0.136 4.136 8 C -0.126 4.126 9 C -0.125 4.125 10 C 0.174 3.826 11 H 0.080 0.920 12 C 0.068 3.932 13 O -0.575 6.575 14 N -0.720 5.720 15 C 0.699 3.301 16 O -0.641 6.641 17 N -0.728 5.728 18 C 0.170 3.830 19 C 0.052 3.948 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.527 4.527 23 H 0.044 0.956 24 C 0.028 3.972 25 N -0.899 5.899 26 Si 0.946 3.054 27 H -0.275 1.275 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.026 0.974 40 H 0.394 0.606 41 H 0.404 0.596 42 H 0.402 0.598 43 H 0.034 0.966 44 H 0.032 0.968 45 H 0.033 0.967 46 H 0.063 0.937 47 H 0.016 0.984 48 H 0.017 0.983 49 H 0.063 0.937 50 H 0.034 0.966 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.588 11.094 -9.413 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 H 0.116 0.884 4 C -0.078 4.078 5 C -0.144 4.144 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.144 4.144 9 C -0.142 4.142 10 C 0.069 3.931 11 H 0.098 0.902 12 C -0.011 4.011 13 O -0.382 6.382 14 N -0.374 5.374 15 C 0.399 3.601 16 O -0.524 6.524 17 N -0.383 5.383 18 C 0.046 3.954 19 C 0.052 3.948 20 C -0.174 4.174 21 C -0.175 4.175 22 C -0.566 4.566 23 H 0.062 0.938 24 C -0.172 4.172 25 N -0.538 5.538 26 Si 0.773 3.227 27 H -0.200 1.200 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.098 0.902 39 H 0.044 0.956 40 H 0.243 0.757 41 H 0.239 0.761 42 H 0.238 0.762 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.035 0.965 48 H 0.036 0.964 49 H 0.081 0.919 50 H 0.053 0.947 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.723 10.172 -9.440 24.116 hybrid contribution 1.054 -0.456 0.774 1.385 sum -18.669 9.717 -8.666 22.760 Atomic orbital electron populations 1.21806 0.91915 1.02596 1.03156 1.20299 0.97443 0.99479 0.89050 0.88365 1.19914 0.97607 0.94112 0.96206 1.21114 1.00799 0.94879 0.97593 1.21365 0.98405 1.00408 0.94913 1.21404 0.98514 0.95417 1.00064 1.21422 0.99874 0.95031 0.98038 1.21310 0.97727 1.00709 0.94490 1.21021 0.78780 0.98894 0.94411 0.90179 1.22553 0.98922 0.82856 0.96745 1.86395 1.82035 1.21025 1.48769 1.44876 1.07193 1.31163 1.54182 1.16170 0.82102 0.81824 0.80028 1.90831 1.67375 1.44483 1.49724 1.45207 1.04371 1.33600 1.55106 1.21078 0.92788 0.87885 0.93662 1.18353 0.88282 0.94400 0.93802 1.21629 1.02313 0.97271 0.96221 1.21637 1.02479 0.95940 0.97466 1.21291 0.91951 1.12468 1.30889 0.93769 1.25456 0.98036 0.97683 0.96001 1.69919 1.06860 1.35500 1.41512 0.85692 0.78522 0.79862 0.78644 1.20011 1.20696 1.20665 0.92361 0.90682 0.91422 0.86473 0.85531 0.84955 0.84441 0.84520 0.90250 0.95596 0.75677 0.76095 0.76154 0.94787 0.94943 0.94823 0.91866 0.96528 0.96377 0.91865 0.94735 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.48 71.98 0.61 -1.20 16 2 C -0.04 -0.75 2.05 -11.54 -0.02 -0.77 16 3 H 0.10 1.63 7.19 -2.38 -0.02 1.61 16 4 C -0.08 -1.55 4.26 -19.87 -0.08 -1.63 16 5 C -0.13 -2.76 8.80 22.27 0.20 -2.57 16 6 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 7 C -0.14 -2.72 10.05 22.27 0.22 -2.50 16 8 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 9 C -0.12 -2.31 9.67 22.27 0.22 -2.10 16 10 C 0.17 3.91 1.73 44.99 0.08 3.99 16 11 H 0.08 2.12 6.95 -2.38 -0.02 2.10 16 12 C 0.07 1.35 6.44 71.98 0.46 1.81 16 13 O -0.57 -9.83 12.67 -148.98 -1.89 -11.72 16 14 N -0.72 -19.32 4.53 -457.81 -2.07 -21.39 16 15 C 0.70 25.42 8.53 179.05 1.53 26.95 16 16 O -0.64 -28.28 16.01 -3.97 -0.06 -28.34 16 17 N -0.73 -26.95 4.96 -478.51 -2.37 -29.33 16 18 C 0.17 7.63 4.50 86.38 0.39 8.01 16 19 C 0.05 2.49 0.50 -52.93 -0.03 2.47 16 20 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 21 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 22 C -0.53 -28.48 8.01 25.60 0.21 -28.27 16 23 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 24 C 0.03 1.49 5.15 84.65 0.44 1.93 16 25 N -0.90 -48.47 9.35 21.45 0.20 -48.27 16 26 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 27 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 29 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 30 H 0.06 0.78 7.58 -2.39 -0.02 0.76 16 31 H 0.07 0.81 6.93 -2.39 -0.02 0.80 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.12 2.49 7.21 -2.91 -0.02 2.47 16 34 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.14 2.00 7.95 -2.91 -0.02 1.97 16 38 H 0.08 1.14 6.90 -2.39 -0.02 1.12 16 39 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.39 3.63 9.12 -74.06 -0.68 2.96 16 41 H 0.40 9.46 8.57 -92.71 -0.79 8.67 16 42 H 0.40 13.25 6.18 -92.71 -0.57 12.68 16 43 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.03 1.31 6.86 -2.38 -0.02 1.30 16 46 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 47 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 50 H 0.03 1.33 6.86 -2.39 -0.02 1.32 16 51 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -66.46 402.31 0.55 -65.90 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -1.09 Total: 36.19 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 5.82 Total: -8.21 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -4.25 Total: -98.99 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.95 Total: -40.06 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -66.46 0.55 -65.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.722 kcal (2) G-P(sol) polarization free energy of solvation -66.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds