Wall clock time and date at job start Tue Mar 31 2020 19:33:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09002 * 109.47398 * 2 1
4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3
5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1
6 6 C 1.38237 * 120.00161 * 179.78869 * 5 4 2
7 7 C 1.38232 * 119.99682 * 0.44033 * 6 5 4
8 8 C 1.38237 * 120.00245 * 359.80853 * 7 6 5
9 9 C 1.38233 * 119.99957 * 239.99778 * 4 2 1
10 10 C 1.52997 * 109.47060 * 239.99831 * 2 1 3
11 11 H 1.09002 * 109.47153 * 300.00319 * 10 2 1
12 12 C 1.52992 * 109.47482 * 180.02562 * 10 2 1
13 13 O 1.42899 * 109.47173 * 305.00089 * 12 10 2
14 14 N 1.46497 * 109.47188 * 59.99892 * 10 2 1
15 15 C 1.34774 * 120.00383 * 204.99951 * 14 10 2
16 16 O 1.21587 * 119.99867 * 0.02562 * 15 14 10
17 17 N 1.34784 * 120.00328 * 180.02562 * 15 14 10
18 18 C 1.46498 * 120.00108 * 180.02562 * 17 15 14
19 19 C 1.53003 * 109.46908 * 179.97438 * 18 17 15
20 20 C 1.53000 * 109.46963 * 299.99867 * 19 18 17
21 21 C 1.53005 * 109.46942 * 59.99842 * 19 18 17
22 22 C 1.50700 * 109.46759 * 179.97438 * 19 18 17
23 23 H 1.07999 * 120.00133 * 359.97438 * 22 19 18
24 24 C 1.37879 * 119.99588 * 180.02562 * 22 19 18
25 25 N 1.31514 * 120.00371 * 359.97438 * 24 22 19
26 26 Si 1.86801 * 119.99799 * 180.02562 * 24 22 19
27 27 H 1.48505 * 109.47368 * 359.97438 * 26 24 22
28 28 H 1.48499 * 109.47381 * 119.99781 * 26 24 22
29 29 H 1.48504 * 109.47105 * 239.99666 * 26 24 22
30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3
31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3
32 32 H 1.08992 * 109.47399 * 179.97438 * 1 2 3
33 33 H 1.08007 * 119.99774 * 359.97438 * 5 4 2
34 34 H 1.08001 * 120.00058 * 180.27375 * 6 5 4
35 35 H 1.07998 * 119.99940 * 179.83577 * 7 6 5
36 36 H 1.08002 * 120.00238 * 179.97438 * 8 7 6
37 37 H 1.07991 * 120.00120 * 359.97438 * 9 4 2
38 38 H 1.09004 * 109.47313 * 64.99993 * 12 10 2
39 39 H 1.08996 * 109.47729 * 184.99759 * 12 10 2
40 40 H 0.96706 * 113.99989 * 179.97438 * 13 12 10
41 41 H 0.97004 * 119.99924 * 25.00373 * 14 10 2
42 42 H 0.97001 * 119.99417 * 0.02562 * 17 15 14
43 43 H 1.09003 * 109.46815 * 299.99845 * 18 17 15
44 44 H 1.08995 * 109.47199 * 60.00150 * 18 17 15
45 45 H 1.08997 * 109.47264 * 60.00279 * 20 19 18
46 46 H 1.09000 * 109.46439 * 180.02562 * 20 19 18
47 47 H 1.09001 * 109.46770 * 299.99834 * 20 19 18
48 48 H 1.09000 * 109.46792 * 60.00315 * 21 19 18
49 49 H 1.09004 * 109.46271 * 179.97438 * 21 19 18
50 50 H 1.08992 * 109.46962 * 299.99963 * 21 19 18
51 51 H 0.96997 * 119.99950 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 6 1.6937 -2.0322 1.4521
6 6 2.1580 -2.6852 2.5786
7 6 2.9535 -2.0136 3.4880
8 6 3.2879 -0.6903 3.2690
9 6 2.8271 -0.0386 2.1403
10 6 2.0400 -0.7213 -1.2492
11 1 1.6766 -1.7489 -1.2492
12 6 3.5699 -0.7219 -1.2490
13 8 4.0468 0.6200 -1.1313
14 7 1.5516 -0.0307 -2.4454
15 6 1.4229 -0.7031 -3.6063
16 8 1.7116 -1.8829 -3.6608
17 7 0.9741 -0.0676 -4.7070
18 6 0.8336 -0.7986 -5.9688
19 6 0.3093 0.1477 -7.0507
20 6 -1.0528 0.7013 -6.6276
21 6 1.2939 1.3038 -7.2378
22 6 0.1654 -0.6041 -8.3488
23 1 0.4227 -1.6519 -8.3974
24 6 -0.2936 0.0461 -9.4747
25 7 -0.6063 1.3221 -9.4157
26 14 -0.4726 -0.8860 -11.0837
27 1 -0.0587 -2.2985 -10.8863
28 1 -1.8895 -0.8421 -11.5262
29 1 0.3886 -0.2582 -12.1179
30 1 -0.3633 0.5139 0.8900
31 1 -0.3634 0.5139 -0.8900
32 1 -0.3634 -1.0276 -0.0005
33 1 1.0688 -2.5556 0.7436
34 1 1.8971 -3.7191 2.7495
35 1 3.3141 -2.5229 4.3694
36 1 3.9091 -0.1655 3.9798
37 1 3.0883 0.9952 1.9692
38 1 3.9329 -1.3116 -0.4072
39 1 3.9333 -1.1562 -2.1803
40 1 5.0108 0.6957 -1.1241
41 1 1.3210 0.9105 -2.4018
42 1 0.7441 0.8738 -4.6635
43 1 1.8040 -1.1933 -6.2699
44 1 0.1319 -1.6219 -5.8355
45 1 -0.9483 1.2451 -5.6888
46 1 -1.4265 1.3751 -7.3986
47 1 -1.7542 -0.1224 -6.4943
48 1 2.2643 0.9094 -7.5393
49 1 0.9205 1.9777 -8.0090
50 1 1.3984 1.8476 -6.2990
51 1 -0.9296 1.7793 -10.2077
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000590949005.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:33:18
Heat of formation + Delta-G solvation = -69.227318 kcal
Electronic energy + Delta-G solvation = -29359.293600 eV
Core-core repulsion = 25451.096950 eV
Total energy + Delta-G solvation = -3908.196650 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.30323 -39.32216 -37.48374 -36.27998 -35.35648 -33.32274 -32.89737 -31.12546
-30.79495 -29.43740 -28.60692 -25.68940 -25.52715 -24.74903 -24.10099 -22.89736
-22.38643 -20.46969 -20.11633 -18.74666 -18.19284 -17.41146 -16.88467 -16.20677
-15.79315 -15.42233 -15.37192 -14.97855 -14.69275 -14.60297 -14.13323 -13.98235
-13.73729 -13.48637 -13.39746 -13.13058 -12.84939 -12.84155 -12.47584 -12.40902
-12.23718 -12.13646 -11.54492 -11.37340 -11.18402 -11.17300 -11.01900 -10.85204
-10.79584 -10.63696 -10.35440 -10.18861 -10.06658 -9.71140 -9.59724 -9.27489
-9.13362 -9.06017 -8.77917 -8.75022 -8.39178 -8.14091 -5.99921 -4.09579
1.12836 1.19045 3.10528 3.28522 3.37127 3.42270 3.56929 3.67820
4.24011 4.39792 4.44700 4.50510 4.76383 4.78350 4.83546 4.91367
4.94555 5.18307 5.26868 5.27670 5.30613 5.37913 5.45248 5.58462
5.63305 5.75422 5.81488 5.84130 5.96089 6.05790 6.25389 6.26590
6.30203 6.40252 6.47367 6.54652 6.71689 6.79253 6.83797 6.86925
6.95312 7.06699 7.14734 7.36134 7.47169 7.52316 7.59291 7.72561
8.04416 8.15793 8.41407 8.54436 8.90670 9.09903 9.56027 11.01511
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.028462 B = 0.002173 C = 0.002158
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 983.528990 B =12883.176624 C =12974.710986
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.057 4.057
3 H 0.093 0.907
4 C -0.066 4.066
5 C -0.116 4.116
6 C -0.119 4.119
7 C -0.127 4.127
8 C -0.122 4.122
9 C -0.109 4.109
10 C 0.181 3.819
11 H 0.098 0.902
12 C 0.064 3.936
13 O -0.567 6.567
14 N -0.741 5.741
15 C 0.699 3.301
16 O -0.604 6.604
17 N -0.733 5.733
18 C 0.151 3.849
19 C 0.055 3.945
20 C -0.129 4.129
21 C -0.129 4.129
22 C -0.503 4.503
23 H 0.058 0.942
24 C 0.065 3.935
25 N -0.886 5.886
26 Si 0.893 3.107
27 H -0.273 1.273
28 H -0.285 1.285
29 H -0.285 1.285
30 H 0.057 0.943
31 H 0.063 0.937
32 H 0.057 0.943
33 H 0.122 0.878
34 H 0.120 0.880
35 H 0.118 0.882
36 H 0.119 0.881
37 H 0.122 0.878
38 H 0.050 0.950
39 H 0.052 0.948
40 H 0.375 0.625
41 H 0.395 0.605
42 H 0.393 0.607
43 H 0.051 0.949
44 H 0.051 0.949
45 H 0.006 0.994
46 H 0.084 0.916
47 H 0.026 0.974
48 H 0.026 0.974
49 H 0.085 0.915
50 H 0.006 0.994
51 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.384 -0.230 24.591 25.407
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.076 4.076
3 H 0.111 0.889
4 C -0.067 4.067
5 C -0.134 4.134
6 C -0.137 4.137
7 C -0.145 4.145
8 C -0.140 4.140
9 C -0.127 4.127
10 C 0.074 3.926
11 H 0.116 0.884
12 C -0.015 4.015
13 O -0.371 6.371
14 N -0.396 5.396
15 C 0.399 3.601
16 O -0.483 6.483
17 N -0.387 5.387
18 C 0.028 3.972
19 C 0.054 3.946
20 C -0.187 4.187
21 C -0.187 4.187
22 C -0.542 4.542
23 H 0.076 0.924
24 C -0.136 4.136
25 N -0.525 5.525
26 Si 0.721 3.279
27 H -0.198 1.198
28 H -0.211 1.211
29 H -0.211 1.211
30 H 0.076 0.924
31 H 0.082 0.918
32 H 0.076 0.924
33 H 0.140 0.860
34 H 0.138 0.862
35 H 0.136 0.864
36 H 0.137 0.863
37 H 0.140 0.860
38 H 0.068 0.932
39 H 0.071 0.929
40 H 0.221 0.779
41 H 0.229 0.771
42 H 0.228 0.772
43 H 0.069 0.931
44 H 0.070 0.930
45 H 0.025 0.975
46 H 0.103 0.897
47 H 0.045 0.955
48 H 0.045 0.955
49 H 0.103 0.897
50 H 0.025 0.975
51 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 5.914 -1.072 24.371 25.101
hybrid contribution 0.375 0.205 -0.851 0.952
sum 6.289 -0.868 23.520 24.361
Atomic orbital electron populations
1.21853 0.93712 1.02493 1.02086 1.20337 0.96143 1.00243 0.90835
0.88912 1.19690 0.97250 0.94065 0.95656 1.21101 1.00143 0.94424
0.97744 1.21142 0.98067 0.99886 0.94601 1.21136 0.98959 0.94946
0.99454 1.21138 1.00234 0.94971 0.97653 1.21078 0.97493 1.00025
0.94086 1.20796 0.91204 0.97402 0.83163 0.88414 1.22660 0.95235
0.83610 1.00039 1.86427 1.26279 1.27270 1.97156 1.45039 1.72381
1.13547 1.08677 1.16076 0.78536 0.85128 0.80394 1.90868 1.58058
1.14598 1.84805 1.45496 1.69511 1.13974 1.09676 1.21559 0.99912
0.94922 0.80773 1.18373 0.92162 0.92159 0.91863 1.21812 0.98623
1.00082 0.98190 1.21814 0.98140 0.99767 0.98997 1.21027 1.43609
0.96250 0.93281 0.92387 1.24887 0.95096 0.94893 0.98746 1.69817
1.44879 1.08876 1.28915 0.86522 0.77617 0.80183 0.83592 1.19762
1.21094 1.21108 0.92405 0.91809 0.92354 0.85955 0.86153 0.86380
0.86283 0.85980 0.93228 0.92942 0.77915 0.77105 0.77200 0.93082
0.93033 0.97521 0.89687 0.95488 0.95515 0.89682 0.97508 0.93111
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.34 8.84 37.16 0.33 -1.01 16
2 C -0.06 -0.54 2.01 -91.77 -0.18 -0.73 16
3 H 0.09 0.90 7.29 -51.93 -0.38 0.52 16
4 C -0.07 -0.62 3.61 -104.62 -0.38 -0.99 16
5 C -0.12 -1.08 8.71 -39.58 -0.34 -1.43 16
6 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16
7 C -0.13 -1.00 10.05 -39.58 -0.40 -1.39 16
8 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16
9 C -0.11 -0.94 9.67 -39.58 -0.38 -1.32 16
10 C 0.18 2.15 1.77 -67.94 -0.12 2.03 16
11 H 0.10 1.32 6.84 -51.93 -0.36 0.96 16
12 C 0.06 0.73 6.50 37.15 0.24 0.98 16
13 O -0.57 -5.83 12.73 -35.23 -0.45 -6.28 16
14 N -0.74 -9.93 4.34 -58.68 -0.25 -10.19 16
15 C 0.70 12.47 8.53 -86.91 -0.74 11.72 16
16 O -0.60 -12.96 16.01 5.29 0.08 -12.88 16
17 N -0.73 -13.33 4.96 -65.22 -0.32 -13.65 16
18 C 0.15 3.28 4.50 -4.04 -0.02 3.27 16
19 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16
20 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16
21 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16
22 C -0.50 -13.26 8.01 -34.44 -0.28 -13.54 16
23 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16
24 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16
25 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16
26 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16
27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
31 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16
32 H 0.06 0.56 7.37 -51.93 -0.38 0.18 16
33 H 0.12 1.11 7.10 -52.48 -0.37 0.74 16
34 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16
35 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16
36 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16
37 H 0.12 0.95 7.95 -52.49 -0.42 0.53 16
38 H 0.05 0.52 7.40 -51.93 -0.38 0.14 16
39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16
40 H 0.37 2.51 9.12 45.56 0.42 2.92 16
41 H 0.40 4.57 8.40 -40.82 -0.34 4.23 16
42 H 0.39 6.49 6.18 -40.82 -0.25 6.24 16
43 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16
44 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16
45 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16
46 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16
47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
48 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
49 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16
50 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16
51 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16
LS Contribution 402.40 15.07 6.06 6.06
Total: -1.00 -30.33 402.40 -9.57 -39.90
By element:
Atomic # 1 Polarization: 19.58 SS G_CDS: -7.55 Total: 12.04 kcal
Atomic # 6 Polarization: -4.99 SS G_CDS: -2.64 Total: -7.63 kcal
Atomic # 7 Polarization: -46.98 SS G_CDS: -0.06 Total: -47.04 kcal
Atomic # 8 Polarization: -18.79 SS G_CDS: -0.36 Total: -19.16 kcal
Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -30.33 -9.57 -39.90 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000590949005.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.328 kcal
(2) G-P(sol) polarization free energy of solvation -30.334 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.662 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.227 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds