Wall clock time and date at job start Tue Mar 31 2020 19:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35985 * 116.99817 * 2 1 4 4 C 1.38717 * 120.00377 * 0.02562 * 3 2 1 5 5 C 1.38101 * 120.00314 * 180.02562 * 4 3 2 6 6 C 1.38716 * 120.00094 * 359.97438 * 5 4 3 7 7 O 1.35986 * 120.00501 * 180.02562 * 6 5 4 8 8 C 1.42905 * 116.99746 * 359.97438 * 7 6 5 9 9 C 1.38681 * 119.99895 * 0.02562 * 6 5 4 10 10 C 1.50701 * 119.99911 * 179.97438 * 9 6 5 11 11 H 1.08994 * 109.47759 * 325.00758 * 10 9 6 12 12 C 1.53006 * 109.46804 * 85.00575 * 10 9 6 13 13 N 1.46905 * 109.47010 * 205.00199 * 10 9 6 14 14 C 1.46897 * 110.99545 * 152.60395 * 13 10 9 15 15 C 1.53045 * 109.44472 * 153.61516 * 14 13 10 16 16 C 1.53199 * 109.31159 * 181.37576 * 15 14 13 17 17 N 1.46925 * 108.77741 * 305.37020 * 16 15 14 18 18 C 1.36933 * 120.62935 * 233.58582 * 17 16 15 19 19 H 1.08000 * 119.99996 * 29.29759 * 18 17 16 20 20 C 1.38815 * 120.00180 * 209.29825 * 18 17 16 21 21 N 1.31624 * 119.99522 * 15.38292 * 20 18 17 22 22 Si 1.86794 * 120.00167 * 195.38231 * 20 18 17 23 23 H 1.48503 * 109.47186 * 90.00094 * 22 20 18 24 24 H 1.48505 * 109.47208 * 209.99818 * 22 20 18 25 25 H 1.48496 * 109.47190 * 330.00105 * 22 20 18 26 26 C 1.46927 * 118.74220 * 53.60629 * 17 16 15 27 27 C 1.53032 * 109.46267 * 273.67658 * 14 13 10 28 28 C 1.38150 * 119.99832 * 0.28255 * 9 6 5 29 29 H 1.09000 * 109.46804 * 300.00208 * 1 2 3 30 30 H 1.08999 * 109.47123 * 59.99690 * 1 2 3 31 31 H 1.08998 * 109.47254 * 180.02562 * 1 2 3 32 32 H 1.08007 * 119.99531 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.00342 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47289 * 59.99539 * 8 7 6 35 35 H 1.08992 * 109.47140 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.46418 * 299.99928 * 8 7 6 37 37 H 1.09004 * 109.46736 * 64.69345 * 12 10 9 38 38 H 1.08992 * 109.47183 * 184.69082 * 12 10 9 39 39 H 1.08999 * 109.47070 * 304.69788 * 12 10 9 40 40 H 1.00900 * 111.00067 * 276.55379 * 13 10 9 41 41 H 1.09002 * 109.46290 * 33.65429 * 14 13 10 42 42 H 1.08989 * 109.50057 * 301.32714 * 15 14 13 43 43 H 1.08998 * 109.49518 * 61.43313 * 15 14 13 44 44 H 1.08993 * 109.58811 * 185.57831 * 16 15 14 45 45 H 1.09000 * 109.58188 * 65.15314 * 16 15 14 46 46 H 0.97003 * 119.99496 * 179.97438 * 21 20 18 47 47 H 1.08991 * 109.58933 * 186.60958 * 26 17 16 48 48 H 1.09002 * 109.70100 * 66.24338 * 26 17 16 49 49 H 1.09003 * 109.49694 * 298.58654 * 27 14 13 50 50 H 1.08999 * 109.49929 * 58.64815 * 27 14 13 51 51 H 1.08004 * 120.00287 * 179.69810 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2909 2.3751 0.0005 5 6 1.9178 3.6056 0.0000 6 6 3.3031 3.6782 -0.0005 7 8 3.9205 4.8898 -0.0005 8 6 3.0805 6.0460 -0.0005 9 6 4.0584 2.5152 -0.0011 10 6 5.5634 2.5941 -0.0022 11 1 5.8817 3.4537 -0.5918 12 6 6.0671 2.7463 1.4345 13 7 6.1176 1.3662 -0.5880 14 6 7.4291 1.6200 -1.1991 15 6 8.2497 0.3281 -1.1994 16 6 9.6291 0.6043 -1.8060 17 7 9.4498 1.2057 -3.1345 18 6 10.0598 0.6633 -4.2339 19 1 10.2659 -0.3963 -4.2694 20 6 10.4134 1.4753 -5.3028 21 7 10.4477 2.7825 -5.1530 22 14 10.8404 0.7128 -6.9537 23 1 9.6096 0.5901 -7.7755 24 1 11.8221 1.5759 -7.6585 25 1 11.4290 -0.6337 -6.7397 26 6 8.6040 2.4004 -3.2609 27 6 7.2360 2.1040 -2.6380 28 6 3.4312 1.2842 -0.0070 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2123 2.3185 0.0005 33 1 1.3297 4.5114 0.0000 34 1 2.4512 6.0379 0.8894 35 1 3.6983 6.9439 -0.0001 36 1 2.4513 6.0378 -0.8906 37 1 5.8211 1.8491 2.0026 38 1 7.1479 2.8869 1.4275 39 1 5.5911 3.6110 1.8967 40 1 6.1759 0.6312 0.1009 41 1 7.9549 2.3840 -0.6264 42 1 8.3670 -0.0286 -0.1763 43 1 7.7364 -0.4287 -1.7926 44 1 10.1810 -0.3309 -1.8997 45 1 10.1791 1.2928 -1.1644 46 1 10.6952 3.3499 -5.8999 47 1 8.4793 2.6500 -4.3145 48 1 9.0693 3.2369 -2.7395 49 1 6.7322 1.3304 -3.2176 50 1 6.6314 3.0109 -2.6388 51 1 4.0194 0.3784 -0.0123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610812619.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:29 Heat of formation + Delta-G solvation = -25.005057 kcal Electronic energy + Delta-G solvation = -29667.178258 eV Core-core repulsion = 25760.899229 eV Total energy + Delta-G solvation = -3906.279029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.65494 -39.06853 -38.25239 -36.71388 -35.37589 -32.94320 -31.13771 -30.26011 -29.84157 -29.30229 -27.85911 -27.49264 -26.99908 -24.60714 -23.62026 -22.16684 -22.11386 -21.25744 -20.26906 -19.06088 -18.11586 -17.59266 -16.92375 -16.60557 -15.98412 -15.65198 -15.28953 -14.95177 -14.75847 -14.60906 -14.42273 -13.99015 -13.66253 -13.37860 -13.32901 -13.14193 -12.92664 -12.88457 -12.63003 -12.43430 -12.25888 -12.11274 -11.84551 -11.78451 -11.63164 -11.32206 -11.06808 -10.95084 -10.79109 -10.67290 -10.60877 -10.50722 -10.14186 -10.08951 -9.83972 -9.46281 -9.41190 -8.88466 -8.41239 -8.06649 -7.74465 -6.57139 -5.70954 -3.14771 1.21214 1.42832 3.14473 3.29309 3.43309 3.49731 3.50892 3.65686 4.32669 4.56194 4.58471 4.69939 4.86432 4.92345 4.93956 4.99323 5.07802 5.18972 5.24700 5.27842 5.33161 5.37254 5.45206 5.45519 5.52917 5.60633 5.71409 5.79067 5.81891 5.92566 6.00013 6.10859 6.17205 6.24485 6.26293 6.32501 6.43143 6.50138 6.58187 6.74279 6.78415 6.86302 6.90293 7.08337 7.19465 7.42011 7.48662 7.51754 7.72428 7.79598 7.87998 8.54531 9.30007 9.93109 10.50721 11.37476 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.002756 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.948580 B =10158.054078 C =10649.337710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.088 3.912 4 C -0.177 4.177 5 C -0.172 4.172 6 C 0.093 3.907 7 O -0.312 6.312 8 C 0.029 3.971 9 C -0.053 4.053 10 C 0.130 3.870 11 H 0.095 0.905 12 C -0.171 4.171 13 N -0.681 5.681 14 C 0.099 3.901 15 C -0.133 4.133 16 C 0.149 3.851 17 N -0.591 5.591 18 C -0.250 4.250 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.172 3.828 27 C -0.124 4.124 28 C -0.087 4.087 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.334 0.666 41 H 0.038 0.962 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.015 0.985 46 H 0.253 0.747 47 H 0.086 0.914 48 H 0.014 0.986 49 H 0.059 0.941 50 H 0.044 0.956 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.399 2.083 14.976 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.043 3.957 4 C -0.196 4.196 5 C -0.191 4.191 6 C 0.048 3.952 7 O -0.226 6.226 8 C -0.067 4.067 9 C -0.054 4.054 10 C 0.020 3.980 11 H 0.113 0.887 12 C -0.230 4.230 13 N -0.312 5.312 14 C -0.010 4.010 15 C -0.173 4.173 16 C 0.021 3.979 17 N -0.314 5.314 18 C -0.380 4.380 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.549 5.549 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.046 3.954 27 C -0.164 4.164 28 C -0.106 4.106 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.153 0.847 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.033 0.967 46 H 0.063 0.937 47 H 0.104 0.896 48 H 0.032 0.968 49 H 0.078 0.922 50 H 0.063 0.937 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.374 2.121 14.247 24.951 hybrid contribution 0.033 0.163 -0.114 0.201 sum -20.341 2.284 14.133 24.874 Atomic orbital electron populations 1.22989 0.78968 1.03659 1.00973 1.86095 1.20825 1.26819 1.89374 1.18917 0.92332 0.84036 1.00412 1.20921 0.99634 0.91778 1.07294 1.20889 0.93073 0.98202 1.06960 1.18709 0.90660 0.85241 1.00582 1.86117 1.35223 1.12078 1.89146 1.23010 0.95896 0.86843 1.00909 1.19028 0.95482 0.89504 1.01421 1.20253 0.89089 0.94469 0.94205 0.88728 1.22410 1.01438 1.02166 0.96969 1.60718 1.27042 1.07274 1.36128 1.21469 0.86660 0.96833 0.96034 1.22221 0.98822 0.96988 0.99282 1.20852 0.92590 0.96702 0.87721 1.44042 1.53900 1.31475 1.02016 1.19193 1.32920 0.91579 0.94274 0.91803 1.25078 0.99523 0.95437 0.99644 1.70029 1.51797 1.02633 1.30405 0.86283 0.77756 0.78376 0.84308 1.21457 1.21832 1.20464 1.20778 0.85991 0.87796 1.00856 1.22199 1.00143 0.99654 0.94381 1.20090 0.90647 0.98113 1.01727 0.93047 0.92904 0.88465 0.85664 0.85498 0.93067 0.88344 0.92876 0.92601 0.92162 0.92004 0.84739 0.94442 0.93550 0.91519 0.92768 0.96734 0.93725 0.89572 0.96780 0.92206 0.93735 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.73 10.50 -19.69 -0.21 -3.94 16 3 C 0.09 1.09 6.69 -39.24 -0.26 0.83 16 4 C -0.18 -1.92 9.03 -39.45 -0.36 -2.27 16 5 C -0.17 -1.88 9.03 -39.46 -0.36 -2.24 16 6 C 0.09 1.19 6.66 -39.24 -0.26 0.93 16 7 O -0.31 -3.83 9.63 -19.70 -0.19 -4.02 16 8 C 0.03 0.23 9.81 101.05 0.99 1.22 16 9 C -0.05 -0.72 5.07 -104.49 -0.53 -1.25 16 10 C 0.13 1.81 2.31 -68.86 -0.16 1.65 16 11 H 0.09 1.51 6.75 -51.93 -0.35 1.16 16 12 C -0.17 -2.05 9.16 37.16 0.34 -1.71 16 13 N -0.68 -10.10 5.00 -100.91 -0.50 -10.61 16 14 C 0.10 1.73 2.26 -67.67 -0.15 1.57 16 15 C -0.13 -2.37 5.35 -26.61 -0.14 -2.51 16 16 C 0.15 3.19 6.52 -3.71 -0.02 3.16 16 17 N -0.59 -15.25 2.99 -172.32 -0.52 -15.76 16 18 C -0.25 -7.03 9.58 -15.06 -0.14 -7.18 16 19 H 0.06 1.77 7.88 -52.49 -0.41 1.35 16 20 C 0.00 0.04 4.95 -17.43 -0.09 -0.04 16 21 N -0.90 -26.83 11.18 55.49 0.62 -26.21 16 22 Si 0.90 22.20 29.58 -169.99 -5.03 17.17 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C 0.17 4.27 5.29 -3.71 -0.02 4.25 16 27 C -0.12 -2.55 5.58 -26.61 -0.15 -2.70 16 28 C -0.09 -1.16 9.26 -39.45 -0.37 -1.53 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.13 1.03 6.29 -52.48 -0.33 0.70 16 33 H 0.13 1.06 6.29 -52.49 -0.33 0.73 16 34 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 37 H 0.05 0.61 8.04 -51.93 -0.42 0.19 16 38 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.33 4.43 7.51 -39.29 -0.29 4.13 16 41 H 0.04 0.68 7.33 -51.93 -0.38 0.30 16 42 H 0.05 0.70 8.10 -51.94 -0.42 0.27 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.09 2.40 6.10 -51.93 -0.32 2.08 16 48 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 50 H 0.04 0.88 7.55 -51.93 -0.39 0.49 16 51 H 0.14 1.89 6.96 -52.48 -0.37 1.52 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -31.87 396.90 -9.04 -40.91 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.51 Total: 3.08 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.69 Total: -6.60 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.40 Total: -52.58 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.40 Total: -7.96 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.87 -9.04 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812619.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.904 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds