Wall clock time and date at job start Tue Mar 31 2020 19:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35985 * 116.99817 * 2 1 4 4 C 1.38717 * 120.00377 * 0.02562 * 3 2 1 5 5 C 1.38101 * 120.00314 * 180.02562 * 4 3 2 6 6 C 1.38716 * 120.00094 * 359.97438 * 5 4 3 7 7 O 1.35986 * 120.00501 * 180.02562 * 6 5 4 8 8 C 1.42905 * 116.99746 * 359.97438 * 7 6 5 9 9 C 1.38681 * 119.99895 * 0.02562 * 6 5 4 10 10 C 1.50701 * 119.99911 * 179.97438 * 9 6 5 11 11 H 1.08994 * 109.47759 * 325.00758 * 10 9 6 12 12 C 1.53006 * 109.46804 * 85.00575 * 10 9 6 13 13 N 1.46905 * 109.47010 * 205.00199 * 10 9 6 14 14 C 1.46897 * 110.99545 * 152.60395 * 13 10 9 15 15 C 1.53045 * 109.44472 * 153.61516 * 14 13 10 16 16 C 1.53199 * 109.31159 * 181.37576 * 15 14 13 17 17 N 1.46925 * 108.77741 * 305.37020 * 16 15 14 18 18 C 1.36933 * 120.62935 * 233.58582 * 17 16 15 19 19 H 1.08000 * 119.99996 * 29.29759 * 18 17 16 20 20 C 1.38815 * 120.00180 * 209.29825 * 18 17 16 21 21 N 1.31624 * 119.99522 * 15.38292 * 20 18 17 22 22 Si 1.86794 * 120.00167 * 195.38231 * 20 18 17 23 23 H 1.48503 * 109.47186 * 90.00094 * 22 20 18 24 24 H 1.48505 * 109.47208 * 209.99818 * 22 20 18 25 25 H 1.48496 * 109.47190 * 330.00105 * 22 20 18 26 26 C 1.46927 * 118.74220 * 53.60629 * 17 16 15 27 27 C 1.53032 * 109.46267 * 273.67658 * 14 13 10 28 28 C 1.38150 * 119.99832 * 0.28255 * 9 6 5 29 29 H 1.09000 * 109.46804 * 300.00208 * 1 2 3 30 30 H 1.08999 * 109.47123 * 59.99690 * 1 2 3 31 31 H 1.08998 * 109.47254 * 180.02562 * 1 2 3 32 32 H 1.08007 * 119.99531 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.00342 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47289 * 59.99539 * 8 7 6 35 35 H 1.08992 * 109.47140 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.46418 * 299.99928 * 8 7 6 37 37 H 1.09004 * 109.46736 * 64.69345 * 12 10 9 38 38 H 1.08992 * 109.47183 * 184.69082 * 12 10 9 39 39 H 1.08999 * 109.47070 * 304.69788 * 12 10 9 40 40 H 1.00900 * 111.00067 * 276.55379 * 13 10 9 41 41 H 1.09002 * 109.46290 * 33.65429 * 14 13 10 42 42 H 1.08989 * 109.50057 * 301.32714 * 15 14 13 43 43 H 1.08998 * 109.49518 * 61.43313 * 15 14 13 44 44 H 1.08993 * 109.58811 * 185.57831 * 16 15 14 45 45 H 1.09000 * 109.58188 * 65.15314 * 16 15 14 46 46 H 0.97003 * 119.99496 * 179.97438 * 21 20 18 47 47 H 1.08991 * 109.58933 * 186.60958 * 26 17 16 48 48 H 1.09002 * 109.70100 * 66.24338 * 26 17 16 49 49 H 1.09003 * 109.49694 * 298.58654 * 27 14 13 50 50 H 1.08999 * 109.49929 * 58.64815 * 27 14 13 51 51 H 1.08004 * 120.00287 * 179.69810 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2909 2.3751 0.0005 5 6 1.9178 3.6056 0.0000 6 6 3.3031 3.6782 -0.0005 7 8 3.9205 4.8898 -0.0005 8 6 3.0805 6.0460 -0.0005 9 6 4.0584 2.5152 -0.0011 10 6 5.5634 2.5941 -0.0022 11 1 5.8817 3.4537 -0.5918 12 6 6.0671 2.7463 1.4345 13 7 6.1176 1.3662 -0.5880 14 6 7.4291 1.6200 -1.1991 15 6 8.2497 0.3281 -1.1994 16 6 9.6291 0.6043 -1.8060 17 7 9.4498 1.2057 -3.1345 18 6 10.0598 0.6633 -4.2339 19 1 10.2659 -0.3963 -4.2694 20 6 10.4134 1.4753 -5.3028 21 7 10.4477 2.7825 -5.1530 22 14 10.8404 0.7128 -6.9537 23 1 9.6096 0.5901 -7.7755 24 1 11.8221 1.5759 -7.6585 25 1 11.4290 -0.6337 -6.7397 26 6 8.6040 2.4004 -3.2609 27 6 7.2360 2.1040 -2.6380 28 6 3.4312 1.2842 -0.0070 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2123 2.3185 0.0005 33 1 1.3297 4.5114 0.0000 34 1 2.4512 6.0379 0.8894 35 1 3.6983 6.9439 -0.0001 36 1 2.4513 6.0378 -0.8906 37 1 5.8211 1.8491 2.0026 38 1 7.1479 2.8869 1.4275 39 1 5.5911 3.6110 1.8967 40 1 6.1759 0.6312 0.1009 41 1 7.9549 2.3840 -0.6264 42 1 8.3670 -0.0286 -0.1763 43 1 7.7364 -0.4287 -1.7926 44 1 10.1810 -0.3309 -1.8997 45 1 10.1791 1.2928 -1.1644 46 1 10.6952 3.3499 -5.8999 47 1 8.4793 2.6500 -4.3145 48 1 9.0693 3.2369 -2.7395 49 1 6.7322 1.3304 -3.2176 50 1 6.6314 3.0109 -2.6388 51 1 4.0194 0.3784 -0.0123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610812619.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:27 Heat of formation + Delta-G solvation = -44.658961 kcal Electronic energy + Delta-G solvation = -29668.030515 eV Core-core repulsion = 25760.899229 eV Total energy + Delta-G solvation = -3907.131286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.52550 -39.92371 -39.66449 -37.89668 -36.61782 -34.62049 -32.72254 -31.60837 -31.22036 -30.45726 -29.17459 -28.16699 -27.69209 -26.47760 -24.71620 -23.79559 -23.35956 -22.58161 -21.34334 -20.75003 -19.07453 -18.64357 -18.37789 -17.76316 -16.94653 -16.74270 -16.37405 -16.28429 -15.95182 -15.66223 -15.58162 -15.36994 -15.27572 -14.85464 -14.79894 -14.24632 -14.10998 -13.93446 -13.76859 -13.63185 -13.43961 -13.22837 -13.06753 -12.92268 -12.68262 -12.59385 -12.54036 -12.46260 -12.35414 -12.09422 -12.02146 -11.88005 -11.76075 -11.52559 -11.27544 -11.25142 -11.08282 -10.54786 -9.80786 -9.31826 -8.66400 -8.61666 -7.86149 -5.33432 0.32140 0.53373 1.46538 1.48730 1.57230 2.40800 2.51957 2.54989 2.75323 3.12709 3.31113 3.71106 3.75676 3.84983 4.00674 4.10172 4.20846 4.25360 4.32874 4.33896 4.37163 4.43460 4.43855 4.44429 4.47893 4.57957 4.60612 4.73868 4.74737 4.76045 4.78675 4.86586 4.90075 4.99142 5.00839 5.04875 5.14111 5.21929 5.24010 5.29069 5.35001 5.42500 5.43048 5.54096 5.65080 5.67115 5.77052 6.19625 6.41013 6.41671 6.59200 6.61537 7.16039 7.87153 8.39842 9.20423 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.002756 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.948580 B =10158.054078 C =10649.337710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.077 3.923 4 C -0.173 4.173 5 C -0.170 4.170 6 C 0.080 3.920 7 O -0.334 6.334 8 C 0.020 3.980 9 C -0.071 4.071 10 C 0.135 3.865 11 H 0.070 0.930 12 C -0.162 4.162 13 N -0.678 5.678 14 C 0.111 3.889 15 C -0.119 4.119 16 C 0.143 3.857 17 N -0.610 5.610 18 C -0.262 4.262 19 H 0.067 0.933 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.267 1.267 26 C 0.182 3.818 27 C -0.108 4.108 28 C -0.103 4.103 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.348 0.652 41 H 0.034 0.966 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.014 0.986 46 H 0.249 0.751 47 H 0.050 0.950 48 H -0.007 1.007 49 H 0.045 0.955 50 H 0.047 0.953 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.482 1.359 16.251 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.032 3.968 4 C -0.192 4.192 5 C -0.188 4.188 6 C 0.034 3.966 7 O -0.249 6.249 8 C -0.075 4.075 9 C -0.072 4.072 10 C 0.025 3.975 11 H 0.088 0.912 12 C -0.221 4.221 13 N -0.310 5.310 14 C 0.002 3.998 15 C -0.159 4.159 16 C 0.017 3.983 17 N -0.334 5.334 18 C -0.393 4.393 19 H 0.084 0.916 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.797 3.203 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.191 1.191 26 C 0.056 3.944 27 C -0.148 4.148 28 C -0.122 4.122 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.168 0.832 41 H 0.052 0.948 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.032 0.968 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.011 0.989 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.479 1.374 15.560 27.374 hybrid contribution 0.596 0.419 -0.465 0.864 sum -21.883 1.793 15.096 26.645 Atomic orbital electron populations 1.23290 0.76809 1.05315 1.02054 1.86066 1.23144 1.26704 1.89342 1.19049 0.92277 0.84943 1.00482 1.21246 1.01023 0.91073 1.05840 1.21209 0.92538 0.99403 1.05676 1.18881 0.91488 0.85276 1.00924 1.86087 1.36807 1.12800 1.89194 1.23280 0.96265 0.85838 1.02092 1.19012 0.95055 0.90249 1.02905 1.20142 0.89758 0.92793 0.94767 0.91211 1.22315 1.01043 1.02922 0.95815 1.60544 1.25068 1.08283 1.37081 1.21172 0.88026 0.96591 0.94020 1.22045 0.96159 0.96704 1.00964 1.21033 0.94997 0.96377 0.85875 1.44305 1.54148 1.31623 1.03320 1.19536 1.32462 0.91873 0.95389 0.91562 1.25868 1.00045 0.95863 1.02999 1.70189 1.53112 1.03911 1.31074 0.85245 0.77263 0.77932 0.79889 1.21353 1.22038 1.19108 1.20515 0.87956 0.87253 0.98681 1.21938 0.97192 0.99439 0.96231 1.20107 0.91478 0.97790 1.02815 0.91553 0.92099 0.86719 0.82889 0.82852 0.91306 0.87117 0.92129 0.91301 0.92495 0.91735 0.83223 0.94766 0.89718 0.92226 0.92413 0.96833 0.94164 0.93203 0.98901 0.93587 0.93398 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.44 10.50 -93.38 -0.98 -8.42 16 3 C 0.08 1.82 6.69 22.49 0.15 1.97 16 4 C -0.17 -3.32 9.03 22.35 0.20 -3.12 16 5 C -0.17 -3.32 9.03 22.35 0.20 -3.12 16 6 C 0.08 1.95 6.66 22.49 0.15 2.10 16 7 O -0.33 -7.96 9.63 -93.40 -0.90 -8.86 16 8 C 0.02 0.28 9.81 113.37 1.11 1.40 16 9 C -0.07 -1.89 5.07 -19.78 -0.10 -1.99 16 10 C 0.14 3.72 2.31 44.17 0.10 3.83 16 11 H 0.07 2.26 6.75 -2.39 -0.02 2.25 16 12 C -0.16 -3.72 9.16 71.98 0.66 -3.06 16 13 N -0.68 -19.58 5.00 -473.16 -2.37 -21.94 16 14 C 0.11 3.85 2.26 44.94 0.10 3.95 16 15 C -0.12 -4.07 5.35 30.68 0.16 -3.90 16 16 C 0.14 6.09 6.52 86.36 0.56 6.66 16 17 N -0.61 -32.12 2.99 -699.09 -2.09 -34.21 16 18 C -0.26 -14.99 9.58 84.03 0.81 -14.19 16 19 H 0.07 3.68 7.88 -2.91 -0.02 3.65 16 20 C -0.05 -3.04 4.95 84.86 0.42 -2.62 16 21 N -0.94 -57.44 11.18 21.65 0.24 -57.20 16 22 Si 0.97 46.35 29.58 68.60 2.03 48.38 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C 0.18 9.42 5.29 86.36 0.46 9.87 16 27 C -0.11 -4.57 5.58 30.67 0.17 -4.39 16 28 C -0.10 -2.69 9.26 22.35 0.21 -2.48 16 29 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 30 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 31 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.15 1.97 6.29 -2.91 -0.02 1.96 16 33 H 0.15 2.08 6.29 -2.91 -0.02 2.06 16 34 H 0.07 0.73 7.66 -2.38 -0.02 0.72 16 35 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 37 H 0.07 1.39 8.04 -2.39 -0.02 1.37 16 38 H 0.06 1.33 7.68 -2.39 -0.02 1.31 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.35 8.61 7.51 -89.69 -0.67 7.93 16 41 H 0.03 1.23 7.33 -2.39 -0.02 1.21 16 42 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 43 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 45 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 47 H 0.05 2.91 6.10 -2.39 -0.01 2.90 16 48 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 49 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.05 1.96 7.55 -2.39 -0.02 1.94 16 51 H 0.14 3.57 6.96 -2.91 -0.02 3.55 16 Total: -1.00 -70.86 396.90 2.66 -68.20 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.25 Total: 21.81 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 6.48 Total: -7.76 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -4.21 Total: -113.35 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -1.88 Total: -17.28 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -70.86 2.66 -68.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812619.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.543 kcal (2) G-P(sol) polarization free energy of solvation -70.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds