Wall clock time and date at job start Tue Mar 31 2020 19:48:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35984 * 117.00508 * 2 1
4 4 C 1.38720 * 119.99433 * 0.18179 * 3 2 1
5 5 C 1.38115 * 119.99617 * 180.23736 * 4 3 2
6 6 C 1.38723 * 119.99865 * 359.83022 * 5 4 3
7 7 O 1.35981 * 119.99746 * 179.97438 * 6 5 4
8 8 C 1.42905 * 117.00086 * 359.97438 * 7 6 5
9 9 C 1.38669 * 119.99961 * 359.96035 * 6 5 4
10 10 C 1.50699 * 119.99797 * 179.97438 * 9 6 5
11 11 H 1.08998 * 109.47364 * 32.07601 * 10 9 6
12 12 C 1.53002 * 109.47221 * 272.07845 * 10 9 6
13 13 N 1.46907 * 109.47208 * 152.07960 * 10 9 6
14 14 C 1.46893 * 110.99994 * 281.26457 * 13 10 9
15 15 C 1.53039 * 109.46363 * 276.57342 * 14 13 10
16 16 C 1.53186 * 109.31298 * 178.60026 * 15 14 13
17 17 N 1.46933 * 108.76567 * 54.65512 * 16 15 14
18 18 C 1.36937 * 120.63059 * 126.36079 * 17 16 15
19 19 H 1.07994 * 120.00080 * 329.46421 * 18 17 16
20 20 C 1.38815 * 119.99770 * 149.46042 * 18 17 16
21 21 N 1.31614 * 120.00036 * 343.12038 * 20 18 17
22 22 Si 1.86799 * 119.99679 * 163.11907 * 20 18 17
23 23 H 1.48504 * 109.47431 * 0.02562 * 22 20 18
24 24 H 1.48502 * 109.47166 * 120.00322 * 22 20 18
25 25 H 1.48507 * 109.47232 * 240.00242 * 22 20 18
26 26 C 1.46924 * 118.73518 * 306.38285 * 17 16 15
27 27 C 1.53037 * 109.46019 * 156.51477 * 14 13 10
28 28 C 1.38147 * 120.00377 * 359.97438 * 9 6 5
29 29 H 1.08998 * 109.47730 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.47253 * 300.00365 * 1 2 3
31 31 H 1.09003 * 109.47060 * 59.99849 * 1 2 3
32 32 H 1.08000 * 120.00681 * 0.04956 * 4 3 2
33 33 H 1.07994 * 120.00215 * 179.81410 * 5 4 3
34 34 H 1.09000 * 109.46910 * 59.99438 * 8 7 6
35 35 H 1.09003 * 109.46810 * 179.97438 * 8 7 6
36 36 H 1.08996 * 109.47192 * 299.99708 * 8 7 6
37 37 H 1.09005 * 109.46914 * 64.69145 * 12 10 9
38 38 H 1.09004 * 109.47360 * 184.68860 * 12 10 9
39 39 H 1.09002 * 109.47137 * 304.69081 * 12 10 9
40 40 H 1.00906 * 110.99703 * 45.22152 * 13 10 9
41 41 H 1.09007 * 109.45716 * 36.54404 * 14 13 10
42 42 H 1.09003 * 109.49322 * 298.56273 * 15 14 13
43 43 H 1.08995 * 109.49680 * 58.65766 * 15 14 13
44 44 H 1.09000 * 109.60204 * 294.86223 * 16 15 14
45 45 H 1.09004 * 109.70605 * 174.50118 * 16 15 14
46 46 H 0.97000 * 119.99931 * 179.97438 * 21 20 18
47 47 H 1.09006 * 109.58677 * 293.81872 * 26 17 16
48 48 H 1.09005 * 109.70267 * 173.46848 * 26 17 16
49 49 H 1.09004 * 109.50204 * 301.33799 * 27 14 13
50 50 H 1.08996 * 109.49706 * 61.43232 * 27 14 13
51 51 H 1.08004 * 120.00381 * 179.97438 * 28 9 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2116 0.0000
4 6 1.2909 2.3750 0.0038
5 6 1.9180 3.6055 -0.0011
6 6 3.3033 3.6780 -0.0064
7 8 3.9207 4.8896 -0.0118
8 6 3.0807 6.0458 -0.0123
9 6 4.0585 2.5150 -0.0058
10 6 5.5634 2.5938 -0.0121
11 1 5.8829 3.4841 0.5296
12 6 6.0642 2.6683 -1.4559
13 7 6.1190 1.3993 0.6380
14 6 6.0420 1.5119 2.1005
15 6 7.2402 2.3136 2.6140
16 6 7.1381 2.4589 4.1356
17 7 7.0075 1.1217 4.7303
18 6 7.8617 0.7113 5.7188
19 1 8.8751 1.0835 5.7457
20 6 7.4250 -0.1833 6.6863
21 7 6.1363 -0.3827 6.8644
22 14 8.6664 -1.1040 7.7353
23 1 10.0411 -0.7041 7.3410
24 1 8.4467 -0.7739 9.1664
25 1 8.4983 -2.5656 7.5330
26 6 5.9432 0.2332 4.2440
27 6 6.0585 0.1132 2.7212
28 6 3.4313 1.2841 0.0005
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 0.2124 2.3186 0.0076
33 1 1.3299 4.5113 -0.0012
34 1 2.4543 6.0401 0.8797
35 1 3.6987 6.9437 -0.0164
36 1 2.4486 6.0353 -0.9002
37 1 5.7202 3.5964 -1.9123
38 1 7.1539 2.6413 -1.4644
39 1 5.6753 1.8202 -2.0195
40 1 5.6557 0.5632 0.3147
41 1 5.1189 2.0212 2.3774
42 1 8.1629 1.7921 2.3593
43 1 7.2412 3.3016 2.1536
44 1 6.2632 3.0581 4.3878
45 1 8.0358 2.9434 4.5196
46 1 5.8311 -1.0081 7.5402
47 1 4.9707 0.6509 4.5051
48 1 6.0512 -0.7521 4.6975
49 1 5.2182 -0.4652 2.3373
50 1 6.9923 -0.3873 2.4654
51 1 4.0195 0.3783 0.0006
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000610812620.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:48:33
Heat of formation + Delta-G solvation = -23.535803 kcal
Electronic energy + Delta-G solvation = -30220.965254 eV
Core-core repulsion = 26314.749936 eV
Total energy + Delta-G solvation = -3906.215318 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-40.77914 -39.10101 -38.27564 -36.72008 -35.28182 -32.89814 -31.05083 -30.48023
-29.75818 -29.33734 -28.03844 -27.47337 -27.02471 -24.50342 -23.63394 -22.12004
-22.09046 -21.33859 -20.22073 -18.93029 -18.35328 -17.63705 -16.95980 -16.64477
-16.00194 -15.66903 -15.19248 -15.04652 -14.85463 -14.71056 -14.50901 -13.98392
-13.61967 -13.39878 -13.27336 -13.14256 -12.95445 -12.91138 -12.61527 -12.50317
-12.22865 -11.91888 -11.82083 -11.66304 -11.64675 -11.24743 -11.04765 -10.89348
-10.89031 -10.65051 -10.61460 -10.50860 -10.21264 -10.09045 -9.85659 -9.48517
-9.31672 -8.98099 -8.39759 -8.13406 -7.80719 -6.54478 -5.71451 -3.14941
1.11011 1.36982 3.11078 3.24137 3.42074 3.49818 3.52728 3.58433
4.43868 4.52354 4.55371 4.56799 4.84036 4.90827 4.95867 4.96937
5.00770 5.16273 5.25085 5.30054 5.32598 5.38751 5.44399 5.48829
5.57691 5.65023 5.69491 5.80281 5.86543 5.93191 6.09754 6.10578
6.16964 6.21187 6.27162 6.31919 6.45702 6.47085 6.63926 6.70305
6.76607 6.78816 6.94691 7.14164 7.16447 7.35840 7.45325 7.48651
7.71569 7.75626 7.88747 8.54926 9.30031 9.93470 10.52664 11.37248
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.012725 B = 0.003270 C = 0.002931
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2199.921720 B = 8559.486706 C = 9550.961654
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.316 6.316
3 C 0.099 3.901
4 C -0.175 4.175
5 C -0.168 4.168
6 C 0.097 3.903
7 O -0.311 6.311
8 C 0.028 3.972
9 C -0.094 4.094
10 C 0.130 3.870
11 H 0.095 0.905
12 C -0.131 4.131
13 N -0.679 5.679
14 C 0.098 3.902
15 C -0.116 4.116
16 C 0.145 3.855
17 N -0.591 5.591
18 C -0.250 4.250
19 H 0.064 0.936
20 C 0.003 3.997
21 N -0.902 5.902
22 Si 0.900 3.100
23 H -0.277 1.277
24 H -0.291 1.291
25 H -0.289 1.289
26 C 0.178 3.822
27 C -0.140 4.140
28 C -0.112 4.112
29 H 0.099 0.901
30 H 0.054 0.946
31 H 0.052 0.948
32 H 0.128 0.872
33 H 0.129 0.871
34 H 0.053 0.947
35 H 0.099 0.901
36 H 0.051 0.949
37 H 0.056 0.944
38 H 0.067 0.933
39 H 0.051 0.949
40 H 0.335 0.665
41 H 0.036 0.964
42 H 0.063 0.937
43 H 0.046 0.954
44 H 0.013 0.987
45 H 0.053 0.947
46 H 0.252 0.748
47 H 0.015 0.985
48 H 0.082 0.918
49 H 0.044 0.956
50 H 0.063 0.937
51 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.702 8.171 -18.810 23.612
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.230 6.230
3 C 0.054 3.946
4 C -0.194 4.194
5 C -0.186 4.186
6 C 0.052 3.948
7 O -0.225 6.225
8 C -0.067 4.067
9 C -0.097 4.097
10 C 0.020 3.980
11 H 0.113 0.887
12 C -0.189 4.189
13 N -0.310 5.310
14 C -0.011 4.011
15 C -0.156 4.156
16 C 0.019 3.981
17 N -0.314 5.314
18 C -0.380 4.380
19 H 0.082 0.918
20 C -0.195 4.195
21 N -0.547 5.547
22 Si 0.730 3.270
23 H -0.202 1.202
24 H -0.218 1.218
25 H -0.216 1.216
26 C 0.051 3.949
27 C -0.180 4.180
28 C -0.131 4.131
29 H 0.117 0.883
30 H 0.073 0.927
31 H 0.070 0.930
32 H 0.146 0.854
33 H 0.147 0.853
34 H 0.072 0.928
35 H 0.117 0.883
36 H 0.070 0.930
37 H 0.075 0.925
38 H 0.086 0.914
39 H 0.070 0.930
40 H 0.156 0.844
41 H 0.054 0.946
42 H 0.082 0.918
43 H 0.064 0.936
44 H 0.031 0.969
45 H 0.072 0.928
46 H 0.062 0.938
47 H 0.033 0.967
48 H 0.100 0.900
49 H 0.063 0.937
50 H 0.081 0.919
51 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -10.813 8.133 -18.707 23.087
hybrid contribution -1.255 -0.368 0.797 1.532
sum -12.068 7.765 -17.910 22.950
Atomic orbital electron populations
1.23020 0.78690 1.03879 1.01052 1.86100 1.21075 1.26620 1.89160
1.18809 0.92078 0.84231 0.99514 1.20961 0.99812 0.91712 1.06946
1.20980 0.93233 0.98277 1.06155 1.18663 0.90567 0.85339 1.00239
1.86098 1.35228 1.12029 1.89100 1.23022 0.95926 0.86764 1.00990
1.19995 0.98028 0.89759 1.01903 1.20487 0.85612 0.95553 0.96366
0.88711 1.21708 1.01739 1.01174 0.94249 1.60899 1.59511 1.03631
1.06985 1.21433 0.97313 0.97414 0.84964 1.22002 0.98030 0.98048
0.97529 1.20920 0.98339 0.88261 0.90626 1.44020 1.36180 1.09854
1.41305 1.19213 0.91907 1.24167 1.02742 0.91817 1.25090 0.95528
1.02031 0.96887 1.70054 1.12305 1.37466 1.34852 0.86263 0.81083
0.79761 0.79922 1.20200 1.21809 1.21593 1.20647 0.90191 0.96614
0.87431 1.22375 1.00600 0.94616 1.00373 1.20043 0.91385 0.97656
1.04040 0.88276 0.92742 0.92971 0.85397 0.85343 0.92835 0.88272
0.93009 0.92527 0.91414 0.93034 0.84422 0.94570 0.91782 0.93573
0.96946 0.92809 0.93805 0.96674 0.89981 0.93736 0.91862 0.84544
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 9.81 101.05 0.99 1.23 16
2 O -0.32 -3.96 10.50 -19.69 -0.21 -4.17 16
3 C 0.10 1.29 6.69 -39.24 -0.26 1.03 16
4 C -0.18 -2.00 9.03 -39.45 -0.36 -2.35 16
5 C -0.17 -1.90 9.03 -39.45 -0.36 -2.26 16
6 C 0.10 1.26 6.66 -39.24 -0.26 1.00 16
7 O -0.31 -3.77 9.57 -19.68 -0.19 -3.96 16
8 C 0.03 0.22 9.81 101.05 0.99 1.22 16
9 C -0.09 -1.30 4.35 -104.50 -0.45 -1.75 16
10 C 0.13 1.80 2.45 -68.86 -0.17 1.63 16
11 H 0.09 1.44 6.47 -51.93 -0.34 1.11 16
12 C -0.13 -1.54 9.50 37.16 0.35 -1.19 16
13 N -0.68 -10.35 5.91 -100.91 -0.60 -10.94 16
14 C 0.10 1.77 2.25 -67.68 -0.15 1.62 16
15 C -0.12 -2.22 5.56 -26.61 -0.15 -2.37 16
16 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16
17 N -0.59 -15.43 2.98 -172.32 -0.51 -15.94 16
18 C -0.25 -7.10 9.55 -15.06 -0.14 -7.25 16
19 H 0.06 1.78 7.88 -52.49 -0.41 1.37 16
20 C 0.00 0.09 4.90 -17.43 -0.09 0.01 16
21 N -0.90 -26.90 11.38 55.49 0.63 -26.26 16
22 Si 0.90 22.17 29.59 -169.99 -5.03 17.14 16
23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
26 C 0.18 4.42 5.28 -3.71 -0.02 4.40 16
27 C -0.14 -2.81 5.38 -26.62 -0.14 -2.96 16
28 C -0.11 -1.55 9.17 -39.45 -0.36 -1.91 16
29 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16
30 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16
31 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16
32 H 0.13 1.13 6.29 -52.49 -0.33 0.80 16
33 H 0.13 1.12 6.29 -52.49 -0.33 0.79 16
34 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16
35 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16
36 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16
37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.34 4.83 5.85 -39.29 -0.23 4.60 16
41 H 0.04 0.72 7.39 -51.93 -0.38 0.33 16
42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16
43 H 0.05 0.80 7.24 -51.93 -0.38 0.42 16
44 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16
45 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16
46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16
47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
48 H 0.08 2.26 6.26 -51.93 -0.32 1.94 16
49 H 0.04 0.82 8.10 -51.93 -0.42 0.39 16
50 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16
51 H 0.14 1.83 6.02 -52.48 -0.32 1.52 16
LS Contribution 395.13 15.07 5.95 5.95
Total: -1.00 -32.17 395.13 -8.95 -41.12
By element:
Atomic # 1 Polarization: 12.13 SS G_CDS: -8.40 Total: 3.73 kcal
Atomic # 6 Polarization: -6.06 SS G_CDS: -0.60 Total: -6.66 kcal
Atomic # 7 Polarization: -52.68 SS G_CDS: -0.48 Total: -53.15 kcal
Atomic # 8 Polarization: -7.73 SS G_CDS: -0.40 Total: -8.13 kcal
Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -32.17 -8.95 -41.12 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610812620.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.585 kcal
(2) G-P(sol) polarization free energy of solvation -32.168 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.583 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.536 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds