Wall clock time and date at job start Tue Mar 31 2020 19:48:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35984 * 117.00508 * 2 1
4 4 C 1.38720 * 119.99433 * 0.18179 * 3 2 1
5 5 C 1.38115 * 119.99617 * 180.23736 * 4 3 2
6 6 C 1.38723 * 119.99865 * 359.83022 * 5 4 3
7 7 O 1.35981 * 119.99746 * 179.97438 * 6 5 4
8 8 C 1.42905 * 117.00086 * 359.97438 * 7 6 5
9 9 C 1.38669 * 119.99961 * 359.96035 * 6 5 4
10 10 C 1.50699 * 119.99797 * 179.97438 * 9 6 5
11 11 H 1.08998 * 109.47364 * 32.07601 * 10 9 6
12 12 C 1.53002 * 109.47221 * 272.07845 * 10 9 6
13 13 N 1.46907 * 109.47208 * 152.07960 * 10 9 6
14 14 C 1.46893 * 110.99994 * 281.26457 * 13 10 9
15 15 C 1.53039 * 109.46363 * 276.57342 * 14 13 10
16 16 C 1.53186 * 109.31298 * 178.60026 * 15 14 13
17 17 N 1.46933 * 108.76567 * 54.65512 * 16 15 14
18 18 C 1.36937 * 120.63059 * 126.36079 * 17 16 15
19 19 H 1.07994 * 120.00080 * 329.46421 * 18 17 16
20 20 C 1.38815 * 119.99770 * 149.46042 * 18 17 16
21 21 N 1.31614 * 120.00036 * 343.12038 * 20 18 17
22 22 Si 1.86799 * 119.99679 * 163.11907 * 20 18 17
23 23 H 1.48504 * 109.47431 * 0.02562 * 22 20 18
24 24 H 1.48502 * 109.47166 * 120.00322 * 22 20 18
25 25 H 1.48507 * 109.47232 * 240.00242 * 22 20 18
26 26 C 1.46924 * 118.73518 * 306.38285 * 17 16 15
27 27 C 1.53037 * 109.46019 * 156.51477 * 14 13 10
28 28 C 1.38147 * 120.00377 * 359.97438 * 9 6 5
29 29 H 1.08998 * 109.47730 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.47253 * 300.00365 * 1 2 3
31 31 H 1.09003 * 109.47060 * 59.99849 * 1 2 3
32 32 H 1.08000 * 120.00681 * 0.04956 * 4 3 2
33 33 H 1.07994 * 120.00215 * 179.81410 * 5 4 3
34 34 H 1.09000 * 109.46910 * 59.99438 * 8 7 6
35 35 H 1.09003 * 109.46810 * 179.97438 * 8 7 6
36 36 H 1.08996 * 109.47192 * 299.99708 * 8 7 6
37 37 H 1.09005 * 109.46914 * 64.69145 * 12 10 9
38 38 H 1.09004 * 109.47360 * 184.68860 * 12 10 9
39 39 H 1.09002 * 109.47137 * 304.69081 * 12 10 9
40 40 H 1.00906 * 110.99703 * 45.22152 * 13 10 9
41 41 H 1.09007 * 109.45716 * 36.54404 * 14 13 10
42 42 H 1.09003 * 109.49322 * 298.56273 * 15 14 13
43 43 H 1.08995 * 109.49680 * 58.65766 * 15 14 13
44 44 H 1.09000 * 109.60204 * 294.86223 * 16 15 14
45 45 H 1.09004 * 109.70605 * 174.50118 * 16 15 14
46 46 H 0.97000 * 119.99931 * 179.97438 * 21 20 18
47 47 H 1.09006 * 109.58677 * 293.81872 * 26 17 16
48 48 H 1.09005 * 109.70267 * 173.46848 * 26 17 16
49 49 H 1.09004 * 109.50204 * 301.33799 * 27 14 13
50 50 H 1.08996 * 109.49706 * 61.43232 * 27 14 13
51 51 H 1.08004 * 120.00381 * 179.97438 * 28 9 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2116 0.0000
4 6 1.2909 2.3750 0.0038
5 6 1.9180 3.6055 -0.0011
6 6 3.3033 3.6780 -0.0064
7 8 3.9207 4.8896 -0.0118
8 6 3.0807 6.0458 -0.0123
9 6 4.0585 2.5150 -0.0058
10 6 5.5634 2.5938 -0.0121
11 1 5.8829 3.4841 0.5296
12 6 6.0642 2.6683 -1.4559
13 7 6.1190 1.3993 0.6380
14 6 6.0420 1.5119 2.1005
15 6 7.2402 2.3136 2.6140
16 6 7.1381 2.4589 4.1356
17 7 7.0075 1.1217 4.7303
18 6 7.8617 0.7113 5.7188
19 1 8.8751 1.0835 5.7457
20 6 7.4250 -0.1833 6.6863
21 7 6.1363 -0.3827 6.8644
22 14 8.6664 -1.1040 7.7353
23 1 10.0411 -0.7041 7.3410
24 1 8.4467 -0.7739 9.1664
25 1 8.4983 -2.5656 7.5330
26 6 5.9432 0.2332 4.2440
27 6 6.0585 0.1132 2.7212
28 6 3.4313 1.2841 0.0005
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 0.2124 2.3186 0.0076
33 1 1.3299 4.5113 -0.0012
34 1 2.4543 6.0401 0.8797
35 1 3.6987 6.9437 -0.0164
36 1 2.4486 6.0353 -0.9002
37 1 5.7202 3.5964 -1.9123
38 1 7.1539 2.6413 -1.4644
39 1 5.6753 1.8202 -2.0195
40 1 5.6557 0.5632 0.3147
41 1 5.1189 2.0212 2.3774
42 1 8.1629 1.7921 2.3593
43 1 7.2412 3.3016 2.1536
44 1 6.2632 3.0581 4.3878
45 1 8.0358 2.9434 4.5196
46 1 5.8311 -1.0081 7.5402
47 1 4.9707 0.6509 4.5051
48 1 6.0512 -0.7521 4.6975
49 1 5.2182 -0.4652 2.3373
50 1 6.9923 -0.3873 2.4654
51 1 4.0195 0.3783 0.0006
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000610812620.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:48:32
Heat of formation + Delta-G solvation = -43.602022 kcal
Electronic energy + Delta-G solvation = -30221.835391 eV
Core-core repulsion = 26314.749936 eV
Total energy + Delta-G solvation = -3907.085454 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-41.69297 -39.98071 -39.68128 -37.98434 -36.51776 -34.62015 -32.75390 -31.64676
-31.24595 -30.48878 -29.42527 -28.18821 -27.74849 -26.44631 -24.67441 -23.77757
-23.37444 -22.73073 -21.30991 -20.69474 -19.27536 -18.68951 -18.47466 -17.85214
-16.89703 -16.80187 -16.44569 -16.37301 -16.02136 -15.71251 -15.62593 -15.53938
-15.32849 -14.84396 -14.66530 -14.54614 -14.16683 -13.85779 -13.78210 -13.68915
-13.27631 -13.25168 -13.06079 -12.74291 -12.73569 -12.61116 -12.55379 -12.45096
-12.39546 -12.11277 -11.96855 -11.94087 -11.81948 -11.60065 -11.33608 -11.23753
-11.09400 -10.55544 -9.93323 -9.43517 -8.70703 -8.66384 -7.87854 -5.35624
0.18492 0.44064 1.46253 1.47874 1.59305 2.33379 2.46668 2.51580
2.65557 3.14886 3.30305 3.61746 3.68778 3.71854 4.01814 4.07797
4.11003 4.20026 4.25432 4.38480 4.38509 4.41512 4.41924 4.45139
4.46887 4.54252 4.54864 4.70471 4.71175 4.75907 4.77185 4.83251
4.88120 4.96408 4.98570 5.05577 5.11826 5.21673 5.24570 5.25558
5.31958 5.37055 5.39450 5.50105 5.55431 5.65634 5.71004 6.16123
6.33224 6.40075 6.47951 6.54567 7.14722 7.84706 8.39562 9.19122
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.012725 B = 0.003270 C = 0.002931
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2199.921720 B = 8559.486706 C = 9550.961654
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.338 6.338
3 C 0.084 3.916
4 C -0.174 4.174
5 C -0.167 4.167
6 C 0.086 3.914
7 O -0.329 6.329
8 C 0.019 3.981
9 C -0.110 4.110
10 C 0.135 3.865
11 H 0.081 0.919
12 C -0.123 4.123
13 N -0.672 5.672
14 C 0.113 3.887
15 C -0.103 4.103
16 C 0.143 3.857
17 N -0.608 5.608
18 C -0.265 4.265
19 H 0.065 0.935
20 C -0.048 4.048
21 N -0.936 5.936
22 Si 0.968 3.032
23 H -0.266 1.266
24 H -0.291 1.291
25 H -0.289 1.289
26 C 0.186 3.814
27 C -0.125 4.125
28 C -0.131 4.131
29 H 0.115 0.885
30 H 0.059 0.941
31 H 0.069 0.931
32 H 0.155 0.845
33 H 0.156 0.844
34 H 0.057 0.943
35 H 0.116 0.884
36 H 0.068 0.932
37 H 0.064 0.936
38 H 0.068 0.932
39 H 0.055 0.945
40 H 0.341 0.659
41 H 0.021 0.979
42 H 0.058 0.942
43 H 0.068 0.932
44 H 0.005 0.995
45 H 0.056 0.944
46 H 0.250 0.750
47 H -0.011 1.011
48 H 0.050 0.950
49 H 0.061 0.939
50 H 0.059 0.941
51 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.138 9.068 -20.328 25.353
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.253 6.253
3 C 0.039 3.961
4 C -0.192 4.192
5 C -0.185 4.185
6 C 0.040 3.960
7 O -0.243 6.243
8 C -0.075 4.075
9 C -0.113 4.113
10 C 0.024 3.976
11 H 0.099 0.901
12 C -0.180 4.180
13 N -0.304 5.304
14 C 0.004 3.996
15 C -0.142 4.142
16 C 0.017 3.983
17 N -0.332 5.332
18 C -0.396 4.396
19 H 0.083 0.917
20 C -0.243 4.243
21 N -0.581 5.581
22 Si 0.796 3.204
23 H -0.190 1.190
24 H -0.218 1.218
25 H -0.215 1.215
26 C 0.060 3.940
27 C -0.164 4.164
28 C -0.150 4.150
29 H 0.133 0.867
30 H 0.078 0.922
31 H 0.088 0.912
32 H 0.172 0.828
33 H 0.174 0.826
34 H 0.076 0.924
35 H 0.134 0.866
36 H 0.087 0.913
37 H 0.083 0.917
38 H 0.087 0.913
39 H 0.074 0.926
40 H 0.163 0.837
41 H 0.039 0.961
42 H 0.077 0.923
43 H 0.087 0.913
44 H 0.023 0.977
45 H 0.074 0.926
46 H 0.059 0.941
47 H 0.007 0.993
48 H 0.068 0.932
49 H 0.079 0.921
50 H 0.078 0.922
51 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -11.249 9.054 -20.259 24.878
hybrid contribution -1.223 -0.562 1.255 1.840
sum -12.472 8.492 -19.004 24.266
Atomic orbital electron populations
1.23311 0.76627 1.05441 1.02122 1.86067 1.23328 1.26679 1.89199
1.18993 0.92154 0.85096 0.99866 1.21291 1.01152 0.91113 1.05664
1.21317 0.92890 0.99383 1.04937 1.18824 0.91285 0.85542 1.00308
1.86071 1.36641 1.12562 1.89036 1.23310 0.96383 0.85862 1.01994
1.19970 0.97833 0.90336 1.03146 1.20444 0.86106 0.93931 0.97073
0.90071 1.21635 1.01700 1.01830 0.92858 1.60842 1.59967 1.04782
1.04836 1.21109 0.96163 0.95504 0.86863 1.21816 0.98014 0.99398
0.95002 1.21044 0.98031 0.86525 0.92718 1.44281 1.36009 1.11465
1.41421 1.19541 0.92391 1.24386 1.03243 0.91708 1.25876 0.97234
1.02909 0.98328 1.70206 1.14167 1.38113 1.35642 0.85206 0.79224
0.78088 0.77918 1.18981 1.21762 1.21534 1.20424 0.88748 0.94520
0.90311 1.22133 1.01049 0.96328 0.96940 1.20102 0.92119 0.97557
1.05189 0.86656 0.92229 0.91212 0.82773 0.82616 0.92414 0.86584
0.91295 0.91664 0.91287 0.92579 0.83712 0.96143 0.92287 0.91336
0.97696 0.92557 0.94101 0.99259 0.93162 0.92072 0.92217 0.85099
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.28 9.81 113.37 1.11 1.40 16
2 O -0.34 -8.25 10.50 -93.37 -0.98 -9.23 16
3 C 0.08 2.13 6.69 22.49 0.15 2.29 16
4 C -0.17 -3.62 9.03 22.36 0.20 -3.42 16
5 C -0.17 -3.43 9.03 22.36 0.20 -3.22 16
6 C 0.09 2.12 6.66 22.49 0.15 2.27 16
7 O -0.33 -7.48 9.57 -93.33 -0.89 -8.37 16
8 C 0.02 0.26 9.81 113.37 1.11 1.37 16
9 C -0.11 -2.97 4.35 -19.78 -0.09 -3.05 16
10 C 0.13 3.60 2.45 44.17 0.11 3.71 16
11 H 0.08 2.40 6.47 -2.39 -0.02 2.38 16
12 C -0.12 -2.71 9.50 71.98 0.68 -2.03 16
13 N -0.67 -19.99 5.91 -473.17 -2.79 -22.78 16
14 C 0.11 4.10 2.25 44.94 0.10 4.20 16
15 C -0.10 -3.86 5.56 30.67 0.17 -3.69 16
16 C 0.14 6.43 6.52 86.36 0.56 7.00 16
17 N -0.61 -32.47 2.98 -699.09 -2.08 -34.55 16
18 C -0.27 -15.27 9.55 84.03 0.80 -14.47 16
19 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16
20 C -0.05 -2.77 4.90 84.86 0.42 -2.35 16
21 N -0.94 -57.29 11.38 21.65 0.25 -57.04 16
22 Si 0.97 46.12 29.59 68.60 2.03 48.15 16
23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16
24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16
25 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16
26 C 0.19 9.59 5.28 86.36 0.46 10.05 16
27 C -0.13 -5.08 5.38 30.67 0.16 -4.91 16
28 C -0.13 -3.57 9.17 22.35 0.20 -3.37 16
29 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16
30 H 0.06 0.80 7.65 -2.39 -0.02 0.78 16
31 H 0.07 0.76 7.67 -2.39 -0.02 0.75 16
32 H 0.15 2.27 6.29 -2.91 -0.02 2.25 16
33 H 0.16 2.22 6.29 -2.91 -0.02 2.20 16
34 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16
35 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16
36 H 0.07 0.69 7.66 -2.39 -0.02 0.68 16
37 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16
38 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16
39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
40 H 0.34 9.64 5.85 -89.69 -0.52 9.11 16
41 H 0.02 0.82 7.39 -2.38 -0.02 0.80 16
42 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16
43 H 0.07 2.28 7.24 -2.39 -0.02 2.26 16
44 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16
45 H 0.06 2.46 7.93 -2.38 -0.02 2.44 16
46 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16
47 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16
48 H 0.05 2.88 6.26 -2.38 -0.01 2.87 16
49 H 0.06 2.26 8.10 -2.38 -0.02 2.24 16
50 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16
51 H 0.13 3.55 6.02 -2.91 -0.02 3.53 16
Total: -1.00 -70.56 395.13 2.44 -68.12
By element:
Atomic # 1 Polarization: 23.53 SS G_CDS: 0.40 Total: 23.93 kcal
Atomic # 6 Polarization: -14.74 SS G_CDS: 6.51 Total: -8.23 kcal
Atomic # 7 Polarization: -109.74 SS G_CDS: -4.63 Total: -114.37 kcal
Atomic # 8 Polarization: -15.72 SS G_CDS: -1.87 Total: -17.60 kcal
Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal
Total: -70.56 2.44 -68.12 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610812620.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.518 kcal
(2) G-P(sol) polarization free energy of solvation -70.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.038 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.120 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.602 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds