Wall clock time and date at job start Tue Mar 31 2020 19:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.46790 * 2 1 4 4 C 1.50706 * 109.47030 * 240.00391 * 2 1 3 5 5 C 1.38234 * 120.00196 * 120.00088 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.00092 * 359.97438 * 7 6 5 9 9 C 1.38234 * 119.99618 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.47255 * 120.00071 * 2 1 3 11 11 H 1.09004 * 109.47360 * 60.00072 * 10 2 1 12 12 C 1.53000 * 109.47074 * 179.97438 * 10 2 1 13 13 O 1.42901 * 109.46848 * 55.00368 * 12 10 2 14 14 N 1.46895 * 109.47342 * 300.00053 * 10 2 1 15 15 C 1.46906 * 111.00200 * 154.99839 * 14 10 2 16 16 C 1.52998 * 109.46974 * 180.02562 * 15 14 10 17 17 C 1.50697 * 109.47050 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99985 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00105 * 180.02562 * 17 16 15 20 20 C 1.46496 * 119.99896 * 359.97438 * 19 17 16 21 21 C 1.46497 * 120.00105 * 180.02562 * 19 17 16 22 22 C 1.50707 * 109.47158 * 89.99837 * 21 19 17 23 23 H 1.07991 * 119.99812 * 0.02562 * 22 21 19 24 24 C 1.37872 * 119.99849 * 180.02562 * 22 21 19 25 25 N 1.31514 * 120.00477 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99982 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.46725 * 60.00357 * 26 24 22 28 28 H 1.48500 * 109.47236 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47303 * 300.00603 * 26 24 22 30 30 H 1.09001 * 109.47441 * 299.99512 * 1 2 3 31 31 H 1.08994 * 109.47514 * 60.00156 * 1 2 3 32 32 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 34 34 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.00350 * 179.97438 * 7 6 5 36 36 H 1.07999 * 120.00235 * 179.97438 * 8 7 6 37 37 H 1.08005 * 119.99804 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.47019 * 174.99652 * 12 10 2 39 39 H 1.08998 * 109.47572 * 295.00151 * 12 10 2 40 40 H 0.96708 * 113.99973 * 179.97438 * 13 12 10 41 41 H 1.00900 * 110.99944 * 278.95453 * 14 10 2 42 42 H 1.09002 * 109.46958 * 300.00274 * 15 14 10 43 43 H 1.09001 * 109.46761 * 59.99975 * 15 14 10 44 44 H 1.09002 * 109.47456 * 299.99913 * 16 15 14 45 45 H 1.08998 * 109.46945 * 60.00316 * 16 15 14 46 46 H 1.09003 * 109.46878 * 90.00108 * 20 19 17 47 47 H 1.09003 * 109.47347 * 209.99620 * 20 19 17 48 48 H 1.08996 * 109.47701 * 330.00363 * 20 19 17 49 49 H 1.08995 * 109.47542 * 209.99949 * 21 19 17 50 50 H 1.09007 * 109.47105 * 330.00014 * 21 19 17 51 51 H 0.97002 * 120.00298 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 2.8270 -0.0385 -2.1405 6 6 3.2882 -0.6903 -3.2689 7 6 2.9551 -2.0140 -3.4872 8 6 2.1612 -2.6862 -2.5767 9 6 1.7009 -2.0348 -1.4478 10 6 2.0400 -0.7212 1.2492 11 1 1.6767 -1.7490 1.2492 12 6 3.5700 -0.7218 1.2488 13 8 4.0467 0.6202 1.1312 14 7 1.5504 -0.0288 2.4486 15 6 1.4876 -0.9440 3.5961 16 6 0.9738 -0.1885 4.8234 17 6 0.9100 -1.1271 6.0006 18 8 1.2423 -2.2863 5.8707 19 7 0.4828 -0.6787 7.1977 20 6 0.0809 0.7213 7.3544 21 6 0.4213 -1.5910 8.3422 22 6 1.7341 -1.5587 9.0815 23 1 2.5341 -0.9219 8.7338 24 6 1.9139 -2.3420 10.2018 25 7 0.9399 -3.1178 10.6250 26 14 3.5415 -2.3025 11.1177 27 1 3.8053 -0.9225 11.5988 28 1 3.4791 -3.2272 12.2780 29 1 4.6336 -2.7257 10.2049 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.0912 0.9942 -1.9674 34 1 3.9088 -0.1653 -3.9800 35 1 3.3150 -2.5232 -4.3690 36 1 1.9006 -3.7203 -2.7475 37 1 1.0803 -2.5598 -0.7366 38 1 3.9334 -1.1560 2.1802 39 1 3.9330 -1.3114 0.4070 40 1 5.0108 0.6960 1.1247 41 1 2.1205 0.7766 2.6592 42 1 0.8112 -1.7676 3.3674 43 1 2.4830 -1.3377 3.8017 44 1 1.6499 0.6353 5.0523 45 1 -0.0216 0.2048 4.6175 46 1 -0.9837 0.8197 7.1421 47 1 0.2788 1.0439 8.3767 48 1 0.6484 1.3421 6.6612 49 1 -0.3805 -1.2802 9.0120 50 1 0.2278 -2.6041 7.9894 51 1 1.0666 -3.6692 11.4129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613388795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:35 Heat of formation + Delta-G solvation = -69.912864 kcal Electronic energy + Delta-G solvation = -28670.412444 eV Core-core repulsion = 24762.186066 eV Total energy + Delta-G solvation = -3908.226378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.05512 -39.02555 -38.02673 -35.75407 -34.83160 -34.16553 -32.61472 -31.12841 -30.84154 -29.26150 -28.19069 -27.19683 -25.67873 -24.10983 -23.54493 -22.86608 -22.11444 -21.53133 -19.95728 -18.27188 -17.72698 -16.94415 -16.54099 -16.33461 -15.83014 -15.66540 -15.46687 -15.17090 -15.05615 -14.72299 -14.35012 -14.20198 -13.96823 -13.48958 -13.39562 -13.28618 -13.01085 -12.62821 -12.34753 -12.30064 -12.19844 -12.10018 -12.06138 -11.80812 -11.56426 -11.46797 -11.32763 -11.13686 -10.96607 -10.83454 -10.81836 -10.70683 -10.53253 -10.16611 -10.15614 -9.63704 -9.13271 -8.94383 -8.85932 -8.43084 -8.38103 -7.61656 -6.03784 -4.08655 1.14900 1.18990 3.31214 3.35544 3.37498 3.48457 3.54527 3.76366 4.04759 4.33668 4.46318 4.49746 4.70355 4.77268 4.80072 4.85452 4.93317 5.14307 5.20265 5.23899 5.28824 5.29499 5.31301 5.34599 5.36438 5.47350 5.57115 5.58973 5.66039 5.81052 5.85029 5.87984 5.91457 5.95964 6.04766 6.14744 6.16387 6.21525 6.24693 6.29746 6.33849 6.52607 6.80153 6.97881 7.07697 7.33674 7.40322 7.45997 7.56184 7.92586 8.24343 8.45030 8.90759 9.12291 9.56267 11.04187 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019820 B = 0.002063 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.405584 B =13571.250047 C =13882.177345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 H 0.086 0.914 4 C -0.067 4.067 5 C -0.112 4.112 6 C -0.122 4.122 7 C -0.130 4.130 8 C -0.120 4.120 9 C -0.119 4.119 10 C 0.102 3.898 11 H 0.089 0.911 12 C 0.044 3.956 13 O -0.566 6.566 14 N -0.681 5.681 15 C 0.074 3.926 16 C -0.136 4.136 17 C 0.504 3.496 18 O -0.546 6.546 19 N -0.604 5.604 20 C 0.084 3.916 21 C 0.245 3.755 22 C -0.526 4.526 23 H 0.056 0.944 24 C 0.060 3.940 25 N -0.895 5.895 26 Si 0.898 3.102 27 H -0.277 1.277 28 H -0.286 1.286 29 H -0.277 1.277 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.377 0.623 41 H 0.348 0.652 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.031 0.969 50 H 0.043 0.957 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 8.569 -26.502 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 H 0.105 0.895 4 C -0.068 4.068 5 C -0.130 4.130 6 C -0.140 4.140 7 C -0.148 4.148 8 C -0.138 4.138 9 C -0.137 4.137 10 C -0.009 4.009 11 H 0.107 0.893 12 C -0.036 4.036 13 O -0.371 6.371 14 N -0.312 5.312 15 C -0.055 4.055 16 C -0.176 4.176 17 C 0.291 3.709 18 O -0.425 6.425 19 N -0.336 5.336 20 C -0.060 4.060 21 C 0.125 3.875 22 C -0.565 4.565 23 H 0.074 0.926 24 C -0.142 4.142 25 N -0.534 5.534 26 Si 0.726 3.274 27 H -0.203 1.203 28 H -0.212 1.212 29 H -0.202 1.202 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.224 0.776 41 H 0.167 0.833 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.102 0.898 45 H 0.112 0.888 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.049 0.951 50 H 0.061 0.939 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.207 7.861 -26.545 27.711 hybrid contribution 2.544 -0.265 0.872 2.702 sum 3.751 7.596 -25.674 27.035 Atomic orbital electron populations 1.21734 0.93676 1.01805 1.02018 1.20017 0.96242 0.99574 0.89707 0.89528 1.19931 0.96720 0.94005 0.96103 1.21087 0.97714 1.00003 0.94212 1.21137 1.00220 0.94959 0.97680 1.21119 0.99175 0.94964 0.99511 1.21148 0.98108 0.99863 0.94643 1.21079 1.00319 0.94526 0.97747 1.21670 0.90018 0.98391 0.90809 0.89339 1.22924 0.96845 0.83909 0.99917 1.86409 1.26583 1.27002 1.97129 1.60476 1.57155 1.10050 1.03474 1.21698 1.00434 0.94795 0.88543 1.21592 1.03555 0.98908 0.93565 1.20300 0.78070 0.88603 0.83962 1.90660 1.48733 1.18847 1.84228 1.48159 1.63587 1.10871 1.10951 1.21633 0.98627 0.82986 1.02774 1.19275 0.97039 0.89463 0.81689 1.21392 0.99394 1.25175 1.10511 0.92611 1.24944 0.96937 0.95097 0.97213 1.69924 1.32052 1.26568 1.24841 0.86558 0.83932 0.77821 0.79087 1.20255 1.21151 1.20243 0.90653 0.93463 0.93149 0.86120 0.86391 0.86457 0.86259 0.86103 0.93579 0.93280 0.77592 0.83319 0.90315 0.94498 0.89775 0.88824 0.93727 0.90904 0.92373 0.95051 0.93873 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.85 37.16 0.33 -0.94 16 2 C -0.04 -0.34 2.14 -91.77 -0.20 -0.54 16 3 H 0.09 0.88 7.29 -51.93 -0.38 0.50 16 4 C -0.07 -0.62 3.61 -104.62 -0.38 -1.00 16 5 C -0.11 -0.98 9.67 -39.58 -0.38 -1.37 16 6 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 7 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 8 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 9 C -0.12 -1.08 8.71 -39.58 -0.34 -1.43 16 10 C 0.10 1.03 1.81 -67.72 -0.12 0.91 16 11 H 0.09 0.95 7.04 -51.93 -0.37 0.58 16 12 C 0.04 0.42 6.37 37.16 0.24 0.66 16 13 O -0.57 -5.01 12.15 -35.23 -0.43 -5.43 16 14 N -0.68 -7.56 5.48 -106.72 -0.59 -8.15 16 15 C 0.07 1.03 4.77 -3.82 -0.02 1.01 16 16 C -0.14 -1.98 4.51 -27.89 -0.13 -2.10 16 17 C 0.50 10.47 7.67 -10.99 -0.08 10.38 16 18 O -0.55 -13.74 15.56 5.56 0.09 -13.65 16 19 N -0.60 -12.94 2.86 -182.96 -0.52 -13.46 16 20 C 0.08 1.34 10.24 59.84 0.61 1.95 16 21 C 0.24 6.50 5.16 -5.19 -0.03 6.47 16 22 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 23 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 24 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 25 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 26 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 30 H 0.07 0.76 7.60 -51.93 -0.39 0.36 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.47 7.39 -51.93 -0.38 0.09 16 33 H 0.12 0.96 7.95 -52.49 -0.42 0.54 16 34 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 1.03 7.10 -52.48 -0.37 0.66 16 38 H 0.05 0.49 7.35 -51.93 -0.38 0.11 16 39 H 0.05 0.47 7.40 -51.93 -0.38 0.08 16 40 H 0.38 2.02 9.12 45.56 0.42 2.43 16 41 H 0.35 3.84 7.94 -39.29 -0.31 3.52 16 42 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 43 H 0.04 0.57 7.32 -51.93 -0.38 0.19 16 44 H 0.08 1.10 7.40 -51.93 -0.38 0.71 16 45 H 0.09 1.21 8.11 -51.93 -0.42 0.79 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 48 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 49 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 50 H 0.04 1.29 7.42 -51.92 -0.39 0.90 16 51 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 412.33 15.07 6.21 6.21 Total: -1.00 -33.84 412.33 -9.43 -43.27 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.79 Total: 4.28 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -2.12 Total: -3.96 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.37 Total: -47.69 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.34 Total: -19.09 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.84 -9.43 -43.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613388795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.647 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds