Wall clock time and date at job start Tue Mar 31 2020 19:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.46790 * 2 1 4 4 C 1.50706 * 109.47030 * 240.00391 * 2 1 3 5 5 C 1.38234 * 120.00196 * 120.00088 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.00092 * 359.97438 * 7 6 5 9 9 C 1.38234 * 119.99618 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.47255 * 120.00071 * 2 1 3 11 11 H 1.09004 * 109.47360 * 60.00072 * 10 2 1 12 12 C 1.53000 * 109.47074 * 179.97438 * 10 2 1 13 13 O 1.42901 * 109.46848 * 55.00368 * 12 10 2 14 14 N 1.46895 * 109.47342 * 300.00053 * 10 2 1 15 15 C 1.46906 * 111.00200 * 154.99839 * 14 10 2 16 16 C 1.52998 * 109.46974 * 180.02562 * 15 14 10 17 17 C 1.50697 * 109.47050 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99985 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00105 * 180.02562 * 17 16 15 20 20 C 1.46496 * 119.99896 * 359.97438 * 19 17 16 21 21 C 1.46497 * 120.00105 * 180.02562 * 19 17 16 22 22 C 1.50707 * 109.47158 * 89.99837 * 21 19 17 23 23 H 1.07991 * 119.99812 * 0.02562 * 22 21 19 24 24 C 1.37872 * 119.99849 * 180.02562 * 22 21 19 25 25 N 1.31514 * 120.00477 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99982 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.46725 * 60.00357 * 26 24 22 28 28 H 1.48500 * 109.47236 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47303 * 300.00603 * 26 24 22 30 30 H 1.09001 * 109.47441 * 299.99512 * 1 2 3 31 31 H 1.08994 * 109.47514 * 60.00156 * 1 2 3 32 32 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 34 34 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.00350 * 179.97438 * 7 6 5 36 36 H 1.07999 * 120.00235 * 179.97438 * 8 7 6 37 37 H 1.08005 * 119.99804 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.47019 * 174.99652 * 12 10 2 39 39 H 1.08998 * 109.47572 * 295.00151 * 12 10 2 40 40 H 0.96708 * 113.99973 * 179.97438 * 13 12 10 41 41 H 1.00900 * 110.99944 * 278.95453 * 14 10 2 42 42 H 1.09002 * 109.46958 * 300.00274 * 15 14 10 43 43 H 1.09001 * 109.46761 * 59.99975 * 15 14 10 44 44 H 1.09002 * 109.47456 * 299.99913 * 16 15 14 45 45 H 1.08998 * 109.46945 * 60.00316 * 16 15 14 46 46 H 1.09003 * 109.46878 * 90.00108 * 20 19 17 47 47 H 1.09003 * 109.47347 * 209.99620 * 20 19 17 48 48 H 1.08996 * 109.47701 * 330.00363 * 20 19 17 49 49 H 1.08995 * 109.47542 * 209.99949 * 21 19 17 50 50 H 1.09007 * 109.47105 * 330.00014 * 21 19 17 51 51 H 0.97002 * 120.00298 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 2.8270 -0.0385 -2.1405 6 6 3.2882 -0.6903 -3.2689 7 6 2.9551 -2.0140 -3.4872 8 6 2.1612 -2.6862 -2.5767 9 6 1.7009 -2.0348 -1.4478 10 6 2.0400 -0.7212 1.2492 11 1 1.6767 -1.7490 1.2492 12 6 3.5700 -0.7218 1.2488 13 8 4.0467 0.6202 1.1312 14 7 1.5504 -0.0288 2.4486 15 6 1.4876 -0.9440 3.5961 16 6 0.9738 -0.1885 4.8234 17 6 0.9100 -1.1271 6.0006 18 8 1.2423 -2.2863 5.8707 19 7 0.4828 -0.6787 7.1977 20 6 0.0809 0.7213 7.3544 21 6 0.4213 -1.5910 8.3422 22 6 1.7341 -1.5587 9.0815 23 1 2.5341 -0.9219 8.7338 24 6 1.9139 -2.3420 10.2018 25 7 0.9399 -3.1178 10.6250 26 14 3.5415 -2.3025 11.1177 27 1 3.8053 -0.9225 11.5988 28 1 3.4791 -3.2272 12.2780 29 1 4.6336 -2.7257 10.2049 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.0912 0.9942 -1.9674 34 1 3.9088 -0.1653 -3.9800 35 1 3.3150 -2.5232 -4.3690 36 1 1.9006 -3.7203 -2.7475 37 1 1.0803 -2.5598 -0.7366 38 1 3.9334 -1.1560 2.1802 39 1 3.9330 -1.3114 0.4070 40 1 5.0108 0.6960 1.1247 41 1 2.1205 0.7766 2.6592 42 1 0.8112 -1.7676 3.3674 43 1 2.4830 -1.3377 3.8017 44 1 1.6499 0.6353 5.0523 45 1 -0.0216 0.2048 4.6175 46 1 -0.9837 0.8197 7.1421 47 1 0.2788 1.0439 8.3767 48 1 0.6484 1.3421 6.6612 49 1 -0.3805 -1.2802 9.0120 50 1 0.2278 -2.6041 7.9894 51 1 1.0666 -3.6692 11.4129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613388795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:34 Heat of formation + Delta-G solvation = -93.229349 kcal Electronic energy + Delta-G solvation = -28671.423522 eV Core-core repulsion = 24762.186066 eV Total energy + Delta-G solvation = -3909.237457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.85538 -40.54131 -38.83362 -36.72983 -36.42196 -35.13478 -34.69414 -31.98712 -31.72735 -30.11021 -29.69334 -28.41682 -27.23422 -25.34530 -24.73901 -23.55360 -23.35282 -22.52057 -20.76499 -19.82484 -18.70709 -18.48021 -17.79096 -17.56416 -17.14992 -16.94957 -16.48690 -16.15781 -16.11555 -15.93183 -15.78534 -15.17228 -14.81234 -14.64734 -14.41396 -14.10328 -14.09093 -13.77604 -13.71223 -13.66297 -13.44528 -13.26337 -13.14923 -13.01498 -12.83808 -12.76112 -12.70293 -12.49371 -12.23788 -12.19173 -12.10583 -11.88088 -11.72331 -11.53181 -11.43991 -10.92153 -10.65433 -10.59173 -9.76682 -9.63393 -9.41147 -9.28342 -8.23173 -6.38472 0.50788 0.55460 1.35208 1.39501 1.47003 1.85857 2.29504 2.43052 2.90166 3.05672 3.11013 3.48046 3.73811 3.83827 3.99653 4.03923 4.10540 4.12795 4.20832 4.22921 4.34450 4.41834 4.43053 4.53578 4.61967 4.66268 4.68309 4.70184 4.74431 4.80153 4.84026 4.96707 4.98837 5.01377 5.05515 5.14298 5.20486 5.22928 5.23391 5.33722 5.50009 5.55478 5.65922 5.68240 5.84291 5.84560 6.00359 6.05300 6.18174 6.47603 6.68778 6.80336 6.81739 7.27309 7.49542 8.83593 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019820 B = 0.002063 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.405584 B =13571.250047 C =13882.177345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.025 4.025 3 H 0.083 0.917 4 C -0.076 4.076 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.135 4.135 8 C -0.129 4.129 9 C -0.132 4.132 10 C 0.100 3.900 11 H 0.079 0.921 12 C 0.053 3.947 13 O -0.571 6.571 14 N -0.668 5.668 15 C 0.085 3.915 16 C -0.116 4.116 17 C 0.494 3.506 18 O -0.602 6.602 19 N -0.612 5.612 20 C 0.079 3.921 21 C 0.258 3.742 22 C -0.543 4.543 23 H 0.053 0.947 24 C 0.005 3.995 25 N -0.929 5.929 26 Si 0.969 3.031 27 H -0.259 1.259 28 H -0.278 1.278 29 H -0.278 1.278 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.033 0.967 39 H 0.050 0.950 40 H 0.393 0.607 41 H 0.353 0.647 42 H 0.062 0.938 43 H 0.016 0.984 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.023 0.977 50 H -0.004 1.004 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.549 10.735 -27.811 30.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.044 4.044 3 H 0.101 0.899 4 C -0.076 4.076 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.150 4.150 10 C -0.010 4.010 11 H 0.098 0.902 12 C -0.027 4.027 13 O -0.379 6.379 14 N -0.299 5.299 15 C -0.045 4.045 16 C -0.156 4.156 17 C 0.283 3.717 18 O -0.484 6.484 19 N -0.343 5.343 20 C -0.063 4.063 21 C 0.136 3.864 22 C -0.581 4.581 23 H 0.071 0.929 24 C -0.194 4.194 25 N -0.568 5.568 26 Si 0.793 3.207 27 H -0.184 1.184 28 H -0.203 1.203 29 H -0.204 1.204 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.137 0.863 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.243 0.757 41 H 0.172 0.828 42 H 0.081 0.919 43 H 0.035 0.965 44 H 0.129 0.871 45 H 0.139 0.861 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.114 0.886 49 H 0.041 0.959 50 H 0.014 0.986 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.335 10.091 -27.872 29.734 hybrid contribution 2.166 -0.946 1.208 2.654 sum 4.500 9.145 -26.664 28.546 Atomic orbital electron populations 1.21697 0.93712 1.01555 1.01947 1.19876 0.96088 0.99095 0.89344 0.89892 1.19931 0.97339 0.94139 0.96237 1.21239 0.97725 1.00431 0.94451 1.21419 1.00100 0.95149 0.97742 1.21417 0.98721 0.95142 0.99989 1.21390 0.98140 1.00651 0.94523 1.21182 1.00811 0.94759 0.98260 1.21690 0.90589 0.98033 0.90724 0.90245 1.22726 0.96316 0.84375 0.99281 1.86369 1.28260 1.26204 1.97038 1.60446 1.57366 1.09498 1.02597 1.21477 0.98855 0.94800 0.89337 1.21514 1.05815 0.97747 0.90553 1.21404 0.76479 0.88825 0.85015 1.90630 1.50988 1.21635 1.85173 1.48207 1.63731 1.12492 1.09877 1.21938 1.00870 0.80027 1.03515 1.18747 0.96111 0.88496 0.83040 1.21669 1.00026 1.25401 1.11042 0.92870 1.25901 1.00827 0.94510 0.98172 1.70049 1.34217 1.27179 1.25378 0.85453 0.78819 0.78780 0.77664 1.18362 1.20295 1.20353 0.91193 0.92976 0.93501 0.85463 0.84455 0.84534 0.84992 0.86283 0.94864 0.93131 0.75740 0.82788 0.91947 0.96539 0.87101 0.86067 0.91136 0.91736 0.88554 0.95931 0.98569 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.85 71.98 0.64 -1.71 16 2 C -0.03 -0.45 2.14 -11.54 -0.02 -0.47 16 3 H 0.08 1.55 7.29 -2.39 -0.02 1.54 16 4 C -0.08 -1.33 3.61 -19.86 -0.07 -1.40 16 5 C -0.12 -1.93 9.67 22.27 0.22 -1.72 16 6 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 7 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 8 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 9 C -0.13 -2.34 8.71 22.27 0.19 -2.15 16 10 C 0.10 1.97 1.81 44.92 0.08 2.05 16 11 H 0.08 1.73 7.04 -2.38 -0.02 1.71 16 12 C 0.05 0.98 6.37 71.98 0.46 1.44 16 13 O -0.57 -9.15 12.15 -148.98 -1.81 -10.96 16 14 N -0.67 -13.95 5.48 -491.56 -2.70 -16.65 16 15 C 0.09 2.32 4.77 86.30 0.41 2.73 16 16 C -0.12 -3.16 4.51 29.85 0.13 -3.03 16 17 C 0.49 20.58 7.67 87.66 0.67 21.25 16 18 O -0.60 -31.58 15.56 -3.03 -0.05 -31.63 16 19 N -0.61 -26.24 2.86 -851.14 -2.43 -28.67 16 20 C 0.08 2.33 10.24 127.77 1.31 3.63 16 21 C 0.26 14.20 5.16 85.64 0.44 14.64 16 22 C -0.54 -31.75 9.39 25.60 0.24 -31.50 16 23 H 0.05 3.06 7.81 -2.92 -0.02 3.04 16 24 C 0.00 0.28 5.46 84.65 0.46 0.74 16 25 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 26 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 27 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 29 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 30 H 0.07 1.31 7.60 -2.39 -0.02 1.30 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.86 7.39 -2.38 -0.02 0.84 16 33 H 0.13 1.81 7.95 -2.91 -0.02 1.79 16 34 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.12 2.06 7.10 -2.91 -0.02 2.04 16 38 H 0.03 0.70 7.35 -2.39 -0.02 0.69 16 39 H 0.05 0.93 7.40 -2.39 -0.02 0.91 16 40 H 0.39 3.48 9.12 -74.05 -0.68 2.81 16 41 H 0.35 6.99 7.94 -89.69 -0.71 6.28 16 42 H 0.06 1.91 8.01 -2.39 -0.02 1.89 16 43 H 0.02 0.51 7.32 -2.39 -0.02 0.50 16 44 H 0.11 2.49 7.40 -2.39 -0.02 2.47 16 45 H 0.12 2.71 8.11 -2.39 -0.02 2.69 16 46 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 47 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 48 H 0.10 2.12 6.44 -2.39 -0.02 2.10 16 49 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 50 H 0.00 -0.24 7.42 -2.38 -0.02 -0.26 16 51 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -76.22 412.33 0.70 -75.52 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.46 Total: 22.30 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 5.83 Total: -0.57 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -4.84 Total: -101.95 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -1.86 Total: -42.59 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.22 0.70 -75.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613388795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.706 kcal (2) G-P(sol) polarization free energy of solvation -76.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds