Wall clock time and date at job start Tue Mar 31 2020 19:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47303 * 2 1 4 4 C 1.50708 * 109.47039 * 119.99464 * 2 1 3 5 5 C 1.38233 * 119.99525 * 63.81914 * 4 2 1 6 6 C 1.38242 * 119.99666 * 179.81191 * 5 4 2 7 7 C 1.38234 * 119.99864 * 0.39358 * 6 5 4 8 8 C 1.38238 * 119.99977 * 359.85911 * 7 6 5 9 9 C 1.38227 * 119.99935 * 359.95667 * 8 7 6 10 10 C 1.52990 * 109.47235 * 239.99644 * 2 1 3 11 11 H 1.09007 * 109.47105 * 303.72982 * 10 2 1 12 12 C 1.52997 * 109.47290 * 63.72967 * 10 2 1 13 13 O 1.42904 * 109.46869 * 55.37351 * 12 10 2 14 14 N 1.46899 * 109.47428 * 183.73205 * 10 2 1 15 15 C 1.46897 * 111.00159 * 154.99809 * 14 10 2 16 16 C 1.53003 * 109.47164 * 180.02562 * 15 14 10 17 17 C 1.50700 * 109.47411 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99881 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00303 * 180.02562 * 17 16 15 20 20 C 1.46502 * 119.99692 * 0.02562 * 19 17 16 21 21 C 1.46495 * 120.00226 * 180.02562 * 19 17 16 22 22 C 1.50700 * 109.47252 * 89.99846 * 21 19 17 23 23 H 1.08009 * 119.99889 * 0.02562 * 22 21 19 24 24 C 1.37874 * 119.99994 * 180.02562 * 22 21 19 25 25 N 1.31512 * 120.00225 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99849 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47395 * 89.99793 * 26 24 22 28 28 H 1.48503 * 109.46984 * 210.00137 * 26 24 22 29 29 H 1.48506 * 109.47057 * 329.99562 * 26 24 22 30 30 H 1.09004 * 109.47615 * 294.23194 * 1 2 3 31 31 H 1.08997 * 109.47299 * 54.22910 * 1 2 3 32 32 H 1.09003 * 109.47343 * 174.22978 * 1 2 3 33 33 H 1.08003 * 120.00262 * 359.97438 * 5 4 2 34 34 H 1.07996 * 119.99828 * 180.23295 * 6 5 4 35 35 H 1.08004 * 119.99658 * 179.83186 * 7 6 5 36 36 H 1.07998 * 119.99864 * 179.97438 * 8 7 6 37 37 H 1.08006 * 119.99908 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.47202 * 175.37082 * 12 10 2 39 39 H 1.08994 * 109.47483 * 295.37361 * 12 10 2 40 40 H 0.96700 * 113.99493 * 179.97438 * 13 12 10 41 41 H 1.00902 * 111.00203 * 278.95749 * 14 10 2 42 42 H 1.08999 * 109.47483 * 299.99877 * 15 14 10 43 43 H 1.08993 * 109.47353 * 60.00524 * 15 14 10 44 44 H 1.08995 * 109.47524 * 300.00229 * 16 15 14 45 45 H 1.09002 * 109.47340 * 59.99950 * 16 15 14 46 46 H 1.09000 * 109.47314 * 90.00258 * 20 19 17 47 47 H 1.09008 * 109.47131 * 210.00074 * 20 19 17 48 48 H 1.09004 * 109.47203 * 329.99402 * 20 19 17 49 49 H 1.09005 * 109.47097 * 209.99880 * 21 19 17 50 50 H 1.09000 * 109.47000 * 330.00283 * 21 19 17 51 51 H 0.96999 * 120.00254 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.7647 -2.0546 1.4103 6 6 2.2287 -2.7071 2.5372 7 6 2.9535 -2.0134 3.4882 8 6 3.2166 -0.6679 3.3110 9 6 2.7558 -0.0164 2.1823 10 6 2.0400 -0.7213 -1.2491 11 1 1.6231 -1.7279 -1.2831 12 6 1.6081 0.0520 -2.4966 13 8 2.0638 1.4030 -2.4011 14 7 3.5062 -0.7999 -1.2049 15 6 3.9969 -1.9332 -2.0003 16 6 5.5245 -1.9825 -1.9296 17 6 6.0279 -3.1455 -2.7451 18 8 5.2423 -3.8640 -3.3260 19 7 7.3511 -3.3873 -2.8288 20 6 8.3001 -2.5197 -2.1266 21 6 7.8405 -4.5175 -3.6220 22 6 8.0890 -4.0671 -5.0384 23 1 7.9016 -3.0412 -5.3196 24 6 8.5557 -4.9644 -5.9754 25 7 8.7835 -6.2136 -5.6332 26 14 8.8644 -4.4058 -7.7310 27 1 10.2636 -3.9250 -7.8588 28 1 8.6456 -5.5447 -8.6585 29 1 7.9292 -3.3036 -8.0714 30 1 -0.3634 0.4218 0.9371 31 1 -0.3634 0.6007 -0.8338 32 1 -0.3634 -1.0225 -0.1033 33 1 1.1952 -2.5956 0.6690 34 1 2.0229 -3.7581 2.6757 35 1 3.3137 -2.5226 4.3699 36 1 3.7825 -0.1259 4.0542 37 1 2.9611 1.0349 2.0441 38 1 2.0400 -0.4154 -3.3815 39 1 0.5209 0.0399 -2.5734 40 1 1.8254 1.9530 -3.1599 41 1 3.9241 0.0656 -1.5123 42 1 3.5851 -2.8611 -1.6034 43 1 3.6846 -1.8115 -3.0374 44 1 5.9367 -1.0547 -2.3263 45 1 5.8365 -2.1044 -0.8924 46 1 8.4771 -2.9108 -1.1247 47 1 9.2409 -2.4901 -2.6765 48 1 7.8885 -1.5128 -2.0563 49 1 8.7701 -4.8888 -3.1904 50 1 7.0954 -5.3130 -3.6192 51 1 9.1121 -6.8449 -6.2923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613388801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:39 Heat of formation + Delta-G solvation = -69.682936 kcal Electronic energy + Delta-G solvation = -29082.512916 eV Core-core repulsion = 25174.296508 eV Total energy + Delta-G solvation = -3908.216407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.86317 -38.97318 -38.06529 -35.69190 -34.81547 -34.18293 -32.60613 -30.91262 -30.76130 -29.52268 -27.89342 -26.94658 -25.68555 -24.66292 -23.28616 -22.73573 -21.88678 -21.48477 -19.87938 -18.26107 -17.72609 -16.86728 -16.53287 -16.33226 -15.86969 -15.67748 -15.41421 -15.08344 -14.72970 -14.67614 -14.36485 -14.19010 -13.94429 -13.40238 -13.31390 -13.28546 -12.96584 -12.60524 -12.38933 -12.29096 -12.17095 -12.13398 -11.89870 -11.80686 -11.62254 -11.41472 -11.27598 -11.12046 -11.00148 -10.85185 -10.72826 -10.62518 -10.53576 -10.22382 -10.14960 -9.61220 -8.87071 -8.85201 -8.61940 -8.42967 -8.35028 -7.59969 -6.03397 -4.08164 1.43202 1.45212 3.29670 3.35928 3.39639 3.50641 3.73841 3.82652 4.02880 4.36914 4.47837 4.48006 4.70475 4.91219 4.98078 5.01346 5.09980 5.13803 5.17283 5.22664 5.25366 5.28972 5.31808 5.34593 5.46935 5.52875 5.55121 5.58872 5.68063 5.74638 5.88741 5.90388 5.97206 5.98757 6.06153 6.11065 6.19251 6.20094 6.25980 6.50631 6.54438 6.69927 7.01110 7.06993 7.09102 7.31149 7.44321 7.47506 7.57698 7.93288 8.25163 8.46728 8.91735 9.14097 9.56879 11.04680 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.002568 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.584624 B =10899.545774 C =12014.998991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.039 4.039 3 H 0.087 0.913 4 C -0.043 4.043 5 C -0.112 4.112 6 C -0.118 4.118 7 C -0.131 4.131 8 C -0.120 4.120 9 C -0.113 4.113 10 C 0.101 3.899 11 H 0.089 0.911 12 C 0.041 3.959 13 O -0.567 6.567 14 N -0.677 5.677 15 C 0.077 3.923 16 C -0.135 4.135 17 C 0.505 3.495 18 O -0.547 6.547 19 N -0.603 5.603 20 C 0.084 3.916 21 C 0.245 3.755 22 C -0.525 4.525 23 H 0.056 0.944 24 C 0.060 3.940 25 N -0.895 5.895 26 Si 0.898 3.102 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.275 1.275 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.378 0.622 41 H 0.347 0.653 42 H 0.077 0.923 43 H 0.035 0.965 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.031 0.969 50 H 0.043 0.957 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 15.460 15.487 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.058 4.058 3 H 0.105 0.895 4 C -0.043 4.043 5 C -0.130 4.130 6 C -0.136 4.136 7 C -0.149 4.149 8 C -0.138 4.138 9 C -0.131 4.131 10 C -0.010 4.010 11 H 0.107 0.893 12 C -0.039 4.039 13 O -0.373 6.373 14 N -0.308 5.308 15 C -0.053 4.053 16 C -0.175 4.175 17 C 0.291 3.709 18 O -0.425 6.425 19 N -0.336 5.336 20 C -0.060 4.060 21 C 0.125 3.875 22 C -0.564 4.564 23 H 0.074 0.926 24 C -0.142 4.142 25 N -0.534 5.534 26 Si 0.726 3.274 27 H -0.206 1.206 28 H -0.211 1.211 29 H -0.200 1.200 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.225 0.775 41 H 0.165 0.835 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.049 0.951 50 H 0.061 0.939 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.110 14.302 16.263 26.408 hybrid contribution 0.119 0.698 -2.523 2.621 sum -14.991 15.001 13.740 25.270 Atomic orbital electron populations 1.21863 0.94531 1.01862 1.01905 1.20076 0.94726 0.99816 0.91210 0.89455 1.19576 0.96393 0.93663 0.94631 1.20884 1.00494 0.94251 0.97405 1.21079 0.98410 0.99553 0.94568 1.21050 0.99790 0.94683 0.99388 1.21059 1.00094 0.94825 0.97815 1.20951 0.98371 0.99624 0.94148 1.21707 0.89207 0.98091 0.92000 0.89326 1.22986 0.98404 0.83341 0.99147 1.86429 1.81267 1.21815 1.47750 1.60470 1.04713 1.07423 1.58152 1.21667 0.93780 0.94165 0.95640 1.21579 0.96347 0.98176 1.01433 1.20303 0.82762 0.86029 0.81773 1.90654 1.55017 1.49831 1.47019 1.48151 1.05056 1.31196 1.49149 1.21632 0.94566 0.93588 0.96213 1.19272 0.95011 0.83737 0.89446 1.21440 1.43863 0.96470 0.94634 0.92555 1.24942 0.95500 0.94766 0.98963 1.69934 1.45553 1.03138 1.34798 0.86500 0.78370 0.78294 0.84263 1.20627 1.21073 1.19957 0.92359 0.92375 0.92619 0.86840 0.86584 0.86699 0.86643 0.86645 0.93358 0.93113 0.77471 0.83459 0.90453 0.94658 0.89862 0.88912 0.93750 0.90913 0.92390 0.95076 0.93885 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.55 37.16 0.32 -0.79 16 2 C -0.04 -0.36 2.19 -91.77 -0.20 -0.56 16 3 H 0.09 0.87 7.18 -51.93 -0.37 0.50 16 4 C -0.04 -0.44 4.28 -104.62 -0.45 -0.89 16 5 C -0.11 -1.21 8.84 -39.58 -0.35 -1.55 16 6 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 7 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 8 C -0.12 -1.20 10.05 -39.59 -0.40 -1.59 16 9 C -0.11 -1.16 9.67 -39.59 -0.38 -1.55 16 10 C 0.10 1.00 1.71 -67.72 -0.12 0.89 16 11 H 0.09 0.92 6.98 -51.92 -0.36 0.56 16 12 C 0.04 0.36 6.33 37.16 0.24 0.59 16 13 O -0.57 -4.74 12.07 -35.23 -0.43 -5.16 16 14 N -0.68 -7.86 5.71 -106.73 -0.61 -8.47 16 15 C 0.08 1.10 4.77 -3.82 -0.02 1.08 16 16 C -0.13 -2.06 4.51 -27.88 -0.13 -2.18 16 17 C 0.51 10.70 7.67 -10.99 -0.08 10.62 16 18 O -0.55 -13.93 15.56 5.56 0.09 -13.84 16 19 N -0.60 -13.16 2.86 -182.95 -0.52 -13.68 16 20 C 0.08 1.38 10.24 59.85 0.61 1.99 16 21 C 0.24 6.56 5.16 -5.20 -0.03 6.53 16 22 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 23 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 24 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 25 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 26 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.41 6.93 -51.93 -0.36 0.05 16 32 H 0.05 0.41 7.83 -51.93 -0.41 0.00 16 33 H 0.11 1.12 7.22 -52.48 -0.38 0.74 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.11 0.96 8.06 -52.48 -0.42 0.53 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.12 1.05 7.95 -52.48 -0.42 0.63 16 38 H 0.05 0.48 7.36 -51.93 -0.38 0.09 16 39 H 0.05 0.37 6.90 -51.93 -0.36 0.01 16 40 H 0.38 1.74 9.12 45.56 0.42 2.16 16 41 H 0.35 4.00 7.93 -39.29 -0.31 3.69 16 42 H 0.08 1.22 8.01 -51.93 -0.42 0.80 16 43 H 0.04 0.55 7.32 -51.93 -0.38 0.17 16 44 H 0.08 1.14 7.40 -51.93 -0.38 0.76 16 45 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.07 1.22 8.07 -51.92 -0.42 0.80 16 48 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 49 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 50 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 51 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 412.09 15.07 6.21 6.21 Total: -1.00 -34.50 412.09 -9.50 -44.00 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.75 Total: 4.76 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.20 Total: -4.63 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.40 Total: -48.38 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.34 Total: -19.00 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.50 -9.50 -44.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613388801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.686 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds