Wall clock time and date at job start Tue Mar 31 2020 19:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47303 * 2 1 4 4 C 1.50708 * 109.47039 * 119.99464 * 2 1 3 5 5 C 1.38233 * 119.99525 * 63.81914 * 4 2 1 6 6 C 1.38242 * 119.99666 * 179.81191 * 5 4 2 7 7 C 1.38234 * 119.99864 * 0.39358 * 6 5 4 8 8 C 1.38238 * 119.99977 * 359.85911 * 7 6 5 9 9 C 1.38227 * 119.99935 * 359.95667 * 8 7 6 10 10 C 1.52990 * 109.47235 * 239.99644 * 2 1 3 11 11 H 1.09007 * 109.47105 * 303.72982 * 10 2 1 12 12 C 1.52997 * 109.47290 * 63.72967 * 10 2 1 13 13 O 1.42904 * 109.46869 * 55.37351 * 12 10 2 14 14 N 1.46899 * 109.47428 * 183.73205 * 10 2 1 15 15 C 1.46897 * 111.00159 * 154.99809 * 14 10 2 16 16 C 1.53003 * 109.47164 * 180.02562 * 15 14 10 17 17 C 1.50700 * 109.47411 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99881 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00303 * 180.02562 * 17 16 15 20 20 C 1.46502 * 119.99692 * 0.02562 * 19 17 16 21 21 C 1.46495 * 120.00226 * 180.02562 * 19 17 16 22 22 C 1.50700 * 109.47252 * 89.99846 * 21 19 17 23 23 H 1.08009 * 119.99889 * 0.02562 * 22 21 19 24 24 C 1.37874 * 119.99994 * 180.02562 * 22 21 19 25 25 N 1.31512 * 120.00225 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99849 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47395 * 89.99793 * 26 24 22 28 28 H 1.48503 * 109.46984 * 210.00137 * 26 24 22 29 29 H 1.48506 * 109.47057 * 329.99562 * 26 24 22 30 30 H 1.09004 * 109.47615 * 294.23194 * 1 2 3 31 31 H 1.08997 * 109.47299 * 54.22910 * 1 2 3 32 32 H 1.09003 * 109.47343 * 174.22978 * 1 2 3 33 33 H 1.08003 * 120.00262 * 359.97438 * 5 4 2 34 34 H 1.07996 * 119.99828 * 180.23295 * 6 5 4 35 35 H 1.08004 * 119.99658 * 179.83186 * 7 6 5 36 36 H 1.07998 * 119.99864 * 179.97438 * 8 7 6 37 37 H 1.08006 * 119.99908 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.47202 * 175.37082 * 12 10 2 39 39 H 1.08994 * 109.47483 * 295.37361 * 12 10 2 40 40 H 0.96700 * 113.99493 * 179.97438 * 13 12 10 41 41 H 1.00902 * 111.00203 * 278.95749 * 14 10 2 42 42 H 1.08999 * 109.47483 * 299.99877 * 15 14 10 43 43 H 1.08993 * 109.47353 * 60.00524 * 15 14 10 44 44 H 1.08995 * 109.47524 * 300.00229 * 16 15 14 45 45 H 1.09002 * 109.47340 * 59.99950 * 16 15 14 46 46 H 1.09000 * 109.47314 * 90.00258 * 20 19 17 47 47 H 1.09008 * 109.47131 * 210.00074 * 20 19 17 48 48 H 1.09004 * 109.47203 * 329.99402 * 20 19 17 49 49 H 1.09005 * 109.47097 * 209.99880 * 21 19 17 50 50 H 1.09000 * 109.47000 * 330.00283 * 21 19 17 51 51 H 0.96999 * 120.00254 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.7647 -2.0546 1.4103 6 6 2.2287 -2.7071 2.5372 7 6 2.9535 -2.0134 3.4882 8 6 3.2166 -0.6679 3.3110 9 6 2.7558 -0.0164 2.1823 10 6 2.0400 -0.7213 -1.2491 11 1 1.6231 -1.7279 -1.2831 12 6 1.6081 0.0520 -2.4966 13 8 2.0638 1.4030 -2.4011 14 7 3.5062 -0.7999 -1.2049 15 6 3.9969 -1.9332 -2.0003 16 6 5.5245 -1.9825 -1.9296 17 6 6.0279 -3.1455 -2.7451 18 8 5.2423 -3.8640 -3.3260 19 7 7.3511 -3.3873 -2.8288 20 6 8.3001 -2.5197 -2.1266 21 6 7.8405 -4.5175 -3.6220 22 6 8.0890 -4.0671 -5.0384 23 1 7.9016 -3.0412 -5.3196 24 6 8.5557 -4.9644 -5.9754 25 7 8.7835 -6.2136 -5.6332 26 14 8.8644 -4.4058 -7.7310 27 1 10.2636 -3.9250 -7.8588 28 1 8.6456 -5.5447 -8.6585 29 1 7.9292 -3.3036 -8.0714 30 1 -0.3634 0.4218 0.9371 31 1 -0.3634 0.6007 -0.8338 32 1 -0.3634 -1.0225 -0.1033 33 1 1.1952 -2.5956 0.6690 34 1 2.0229 -3.7581 2.6757 35 1 3.3137 -2.5226 4.3699 36 1 3.7825 -0.1259 4.0542 37 1 2.9611 1.0349 2.0441 38 1 2.0400 -0.4154 -3.3815 39 1 0.5209 0.0399 -2.5734 40 1 1.8254 1.9530 -3.1599 41 1 3.9241 0.0656 -1.5123 42 1 3.5851 -2.8611 -1.6034 43 1 3.6846 -1.8115 -3.0374 44 1 5.9367 -1.0547 -2.3263 45 1 5.8365 -2.1044 -0.8924 46 1 8.4771 -2.9108 -1.1247 47 1 9.2409 -2.4901 -2.6765 48 1 7.8885 -1.5128 -2.0563 49 1 8.7701 -4.8888 -3.1904 50 1 7.0954 -5.3130 -3.6192 51 1 9.1121 -6.8449 -6.2923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613388801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:38 Heat of formation + Delta-G solvation = -93.650930 kcal Electronic energy + Delta-G solvation = -29083.552246 eV Core-core repulsion = 25174.296508 eV Total energy + Delta-G solvation = -3909.255738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.81015 -40.45396 -38.86633 -36.72308 -36.35957 -35.17349 -34.70703 -31.95102 -31.62086 -30.45013 -29.57070 -27.94505 -27.23816 -25.69553 -24.82766 -23.50755 -23.16978 -22.42492 -20.71176 -19.83896 -18.71671 -18.43047 -17.83032 -17.60063 -17.14131 -16.94188 -16.54199 -16.25923 -15.97314 -15.92824 -15.42531 -15.31381 -14.79238 -14.69204 -14.32394 -14.09722 -14.04275 -13.87308 -13.71395 -13.65558 -13.45726 -13.28080 -13.11817 -12.88826 -12.86833 -12.75673 -12.62065 -12.53582 -12.22851 -12.20361 -12.12253 -11.99160 -11.71865 -11.46284 -11.39242 -10.89809 -10.66010 -10.60557 -9.64681 -9.42972 -9.39243 -9.29615 -8.23956 -6.39406 0.66535 0.67432 1.34920 1.38031 1.48358 1.84030 2.28770 2.42533 3.04912 3.05624 3.08580 3.51166 3.74303 3.85315 3.96132 4.06035 4.17347 4.18802 4.26489 4.31712 4.39873 4.40457 4.44605 4.51506 4.57972 4.65590 4.69473 4.71884 4.75662 4.81639 4.83476 4.94669 4.98442 4.99642 5.04790 5.07143 5.21899 5.22201 5.29988 5.34103 5.40717 5.54688 5.74723 5.78005 5.83189 5.92211 6.04439 6.06627 6.30516 6.51036 6.67960 6.78659 6.86831 7.26500 7.47813 8.83244 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.002568 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.584624 B =10899.545774 C =12014.998991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.029 4.029 3 H 0.084 0.916 4 C -0.050 4.050 5 C -0.127 4.127 6 C -0.133 4.133 7 C -0.141 4.141 8 C -0.126 4.126 9 C -0.124 4.124 10 C 0.097 3.903 11 H 0.080 0.920 12 C 0.047 3.953 13 O -0.576 6.576 14 N -0.669 5.669 15 C 0.089 3.911 16 C -0.115 4.115 17 C 0.495 3.505 18 O -0.601 6.601 19 N -0.611 5.611 20 C 0.079 3.921 21 C 0.258 3.742 22 C -0.543 4.543 23 H 0.053 0.947 24 C 0.006 3.994 25 N -0.929 5.929 26 Si 0.970 3.030 27 H -0.262 1.262 28 H -0.280 1.280 29 H -0.272 1.272 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.034 0.966 39 H 0.068 0.932 40 H 0.395 0.605 41 H 0.350 0.650 42 H 0.057 0.943 43 H 0.018 0.982 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.095 0.905 49 H 0.022 0.978 50 H -0.004 1.004 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.942 18.109 15.843 28.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.048 4.048 3 H 0.102 0.898 4 C -0.050 4.050 5 C -0.145 4.145 6 C -0.151 4.151 7 C -0.159 4.159 8 C -0.144 4.144 9 C -0.142 4.142 10 C -0.013 4.013 11 H 0.099 0.901 12 C -0.032 4.032 13 O -0.384 6.384 14 N -0.300 5.300 15 C -0.041 4.041 16 C -0.155 4.155 17 C 0.284 3.716 18 O -0.483 6.483 19 N -0.343 5.343 20 C -0.063 4.063 21 C 0.137 3.863 22 C -0.582 4.582 23 H 0.071 0.929 24 C -0.193 4.193 25 N -0.569 5.569 26 Si 0.794 3.206 27 H -0.187 1.187 28 H -0.206 1.206 29 H -0.197 1.197 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.245 0.755 41 H 0.170 0.830 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.128 0.872 45 H 0.132 0.868 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.113 0.887 49 H 0.040 0.960 50 H 0.014 0.986 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.993 17.004 16.649 28.127 hybrid contribution 0.070 -0.135 -2.564 2.568 sum -14.923 16.869 14.085 26.564 Atomic orbital electron populations 1.21837 0.93343 1.02177 1.02455 1.19988 0.95606 0.99082 0.90151 0.89794 1.19741 0.96454 0.93620 0.95161 1.21020 1.01023 0.94714 0.97723 1.21311 0.98738 1.00208 0.94837 1.21313 0.99703 0.95067 0.99852 1.21344 0.99955 0.94918 0.98142 1.21179 0.98391 1.00292 0.94300 1.21760 0.88073 0.98215 0.93255 0.90148 1.22829 0.99271 0.83484 0.97630 1.86384 1.81479 1.21553 1.48992 1.60438 1.05888 1.06601 1.57075 1.21420 0.93226 0.94523 0.94914 1.21489 0.96676 0.96115 1.01251 1.21366 0.82011 0.86836 0.81420 1.90623 1.56300 1.51999 1.49369 1.48200 1.06484 1.30658 1.48919 1.21929 0.93304 0.94558 0.96517 1.18746 0.93060 0.84604 0.89916 1.21702 1.44189 0.96448 0.95847 0.92870 1.25899 0.94973 0.94751 1.03676 1.70056 1.46045 1.04326 1.36491 0.85383 0.78998 0.77857 0.78367 1.18699 1.20571 1.19720 0.92142 0.91373 0.92543 0.86768 0.85839 0.85192 0.84795 0.85545 0.94756 0.91409 0.75499 0.83030 0.92394 0.96369 0.87213 0.86815 0.91313 0.91576 0.88700 0.95976 0.98581 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.55 71.98 0.62 -1.32 16 2 C -0.03 -0.50 2.19 -11.54 -0.03 -0.52 16 3 H 0.08 1.51 7.18 -2.39 -0.02 1.49 16 4 C -0.05 -0.98 4.28 -19.86 -0.08 -1.06 16 5 C -0.13 -2.67 8.84 22.27 0.20 -2.47 16 6 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 7 C -0.14 -2.70 10.05 22.27 0.22 -2.47 16 8 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 9 C -0.12 -2.35 9.67 22.27 0.22 -2.13 16 10 C 0.10 1.84 1.71 44.91 0.08 1.92 16 11 H 0.08 1.67 6.98 -2.38 -0.02 1.65 16 12 C 0.05 0.76 6.33 71.98 0.46 1.22 16 13 O -0.58 -8.37 12.07 -148.98 -1.80 -10.17 16 14 N -0.67 -14.62 5.71 -491.60 -2.81 -17.43 16 15 C 0.09 2.51 4.77 86.30 0.41 2.93 16 16 C -0.12 -3.32 4.51 29.85 0.13 -3.19 16 17 C 0.49 21.11 7.67 87.66 0.67 21.78 16 18 O -0.60 -31.90 15.56 -3.04 -0.05 -31.94 16 19 N -0.61 -26.74 2.86 -851.12 -2.43 -29.17 16 20 C 0.08 2.42 10.24 127.77 1.31 3.73 16 21 C 0.26 14.37 5.16 85.63 0.44 14.81 16 22 C -0.54 -31.97 9.39 25.60 0.24 -31.73 16 23 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 24 C 0.01 0.34 5.46 84.65 0.46 0.80 16 25 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 26 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 27 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 29 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.80 6.93 -2.39 -0.02 0.79 16 32 H 0.06 0.77 7.83 -2.39 -0.02 0.75 16 33 H 0.11 2.28 7.22 -2.91 -0.02 2.26 16 34 H 0.12 2.23 8.06 -2.91 -0.02 2.20 16 35 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 36 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.13 2.04 7.95 -2.91 -0.02 2.02 16 38 H 0.03 0.65 7.36 -2.39 -0.02 0.64 16 39 H 0.07 0.87 6.90 -2.39 -0.02 0.85 16 40 H 0.40 2.72 9.12 -74.06 -0.68 2.05 16 41 H 0.35 7.31 7.93 -89.69 -0.71 6.60 16 42 H 0.06 1.87 8.01 -2.39 -0.02 1.85 16 43 H 0.02 0.57 7.32 -2.39 -0.02 0.55 16 44 H 0.11 2.63 7.40 -2.39 -0.02 2.62 16 45 H 0.11 2.88 8.11 -2.39 -0.02 2.86 16 46 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.07 2.12 8.07 -2.38 -0.02 2.10 16 48 H 0.09 2.21 6.44 -2.39 -0.02 2.19 16 49 H 0.02 1.25 8.07 -2.38 -0.02 1.23 16 50 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 51 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -77.32 412.09 0.56 -76.76 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -0.46 Total: 23.75 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.79 Total: -2.30 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -4.96 Total: -103.47 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -1.85 Total: -42.11 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -77.32 0.56 -76.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613388801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.886 kcal (2) G-P(sol) polarization free energy of solvation -77.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds