Wall clock time and date at job start Tue Mar 31 2020 19:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.47197 * 2 1 4 4 N 1.46899 * 109.47186 * 239.99983 * 2 1 3 5 5 C 1.46901 * 110.99801 * 84.99908 * 4 2 1 6 6 H 1.08991 * 109.47323 * 325.00430 * 5 4 2 7 7 C 1.52999 * 109.46780 * 85.00017 * 5 4 2 8 8 O 1.42903 * 109.47256 * 65.00343 * 7 5 4 9 9 C 1.53002 * 109.47019 * 204.99934 * 5 4 2 10 10 H 1.08995 * 109.47242 * 299.99962 * 9 5 4 11 11 C 1.52998 * 109.47059 * 60.00709 * 9 5 4 12 12 C 1.50707 * 109.46768 * 180.02562 * 9 5 4 13 13 C 1.38234 * 120.00101 * 299.72857 * 12 9 5 14 14 C 1.38232 * 119.99592 * 179.81238 * 13 12 9 15 15 C 1.38231 * 120.00288 * 0.39341 * 14 13 12 16 16 C 1.38236 * 120.00269 * 359.85935 * 15 14 13 17 17 C 1.38237 * 119.99649 * 359.95849 * 16 15 14 18 18 C 1.50704 * 109.46807 * 120.00243 * 2 1 3 19 19 O 1.21279 * 119.99948 * 120.00068 * 18 2 1 20 20 N 1.34775 * 119.99941 * 299.99602 * 18 2 1 21 21 C 1.46492 * 120.00156 * 0.02562 * 20 18 2 22 22 C 1.46503 * 119.99799 * 180.02562 * 20 18 2 23 23 C 1.50699 * 109.47072 * 90.00121 * 22 20 18 24 24 H 1.08001 * 119.99480 * 0.02562 * 23 22 20 25 25 C 1.37873 * 119.99773 * 179.97438 * 23 22 20 26 26 N 1.31512 * 120.00426 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99744 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47439 * 90.00218 * 27 25 23 29 29 H 1.48502 * 109.47120 * 210.00383 * 27 25 23 30 30 H 1.48502 * 109.47213 * 329.99777 * 27 25 23 31 31 H 1.09003 * 109.46737 * 59.99919 * 1 2 3 32 32 H 1.09001 * 109.46891 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47093 * 299.99772 * 1 2 3 34 34 H 1.00899 * 111.00004 * 208.95518 * 4 2 1 35 35 H 1.08997 * 109.47286 * 304.99903 * 7 5 4 36 36 H 1.09008 * 109.47201 * 184.99683 * 7 5 4 37 37 H 0.96700 * 114.00311 * 180.02562 * 8 7 5 38 38 H 1.08995 * 109.47704 * 59.99536 * 11 9 5 39 39 H 1.09004 * 109.46726 * 180.02562 * 11 9 5 40 40 H 1.09003 * 109.46953 * 299.99249 * 11 9 5 41 41 H 1.07995 * 119.99984 * 359.97438 * 13 12 9 42 42 H 1.08002 * 119.99901 * 180.23399 * 14 13 12 43 43 H 1.08008 * 120.00213 * 179.83395 * 15 14 13 44 44 H 1.07997 * 120.00250 * 179.97438 * 16 15 14 45 45 H 1.08002 * 120.00211 * 180.02562 * 17 16 15 46 46 H 1.09000 * 109.47350 * 89.99808 * 21 20 18 47 47 H 1.08996 * 109.47278 * 209.99510 * 21 20 18 48 48 H 1.09000 * 109.47424 * 329.99860 * 21 20 18 49 49 H 1.08996 * 109.47157 * 210.00465 * 22 20 18 50 50 H 1.08999 * 109.47135 * 330.00263 * 22 20 18 51 51 H 0.97000 * 120.00464 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 1 1.2578 0.9330 -2.2906 7 6 3.4112 0.9809 -2.3222 8 8 4.4882 0.0612 -2.5129 9 6 1.9771 -0.5797 -3.6454 10 1 2.8019 -1.2899 -3.7016 11 6 0.6484 -1.3378 -3.6700 12 6 2.0421 0.3592 -4.8225 13 6 1.0899 1.3503 -4.9695 14 6 1.1518 2.2138 -6.0472 15 6 2.1613 2.0811 -6.9821 16 6 3.1106 1.0866 -6.8380 17 6 3.0508 0.2254 -5.7583 18 6 2.0324 -0.7105 1.2305 19 8 2.7296 -1.6966 1.1192 20 7 1.7068 -0.2500 2.4546 21 6 0.8642 0.9408 2.5890 22 6 2.1955 -0.9404 3.6507 23 6 3.5229 -0.3564 4.0607 24 1 3.9586 0.4488 3.4877 25 6 4.1805 -0.8493 5.1677 26 7 3.6497 -1.8295 5.8656 27 14 5.8255 -0.1250 5.6762 28 1 5.6009 1.0001 6.6190 29 1 6.6432 -1.1716 6.3405 30 1 6.5405 0.3723 4.4734 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.9174 -1.1205 -1.0287 35 1 3.5263 1.4810 -1.3607 36 1 3.4211 1.7226 -3.1211 37 1 5.3629 0.4734 -2.5083 38 1 -0.1764 -0.6276 -3.6137 39 1 0.5736 -1.9098 -4.5949 40 1 0.6018 -2.0169 -2.8186 41 1 0.2990 1.4517 -4.2411 42 1 0.4100 2.9906 -6.1601 43 1 2.2081 2.7541 -7.8256 44 1 3.8990 0.9826 -7.5687 45 1 3.7927 -0.5513 -5.6453 46 1 -0.1837 0.6426 2.6225 47 1 1.1219 1.4663 3.5085 48 1 1.0274 1.5996 1.7361 49 1 1.4776 -0.8153 4.4613 50 1 2.3170 -2.0016 3.4336 51 1 4.1125 -2.1765 6.6443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613389333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:50 Heat of formation + Delta-G solvation = -57.614944 kcal Electronic energy + Delta-G solvation = -29797.869633 eV Core-core repulsion = 25890.176533 eV Total energy + Delta-G solvation = -3907.693100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.10158 -39.29300 -37.72921 -35.55988 -34.88647 -34.10046 -32.60859 -31.07378 -30.61189 -29.15216 -27.88397 -27.18309 -26.04168 -24.07077 -23.87091 -22.81759 -22.37652 -21.16552 -19.89248 -18.52406 -17.50671 -16.87241 -16.67686 -16.41808 -15.90798 -15.40865 -15.36642 -15.05614 -14.84313 -14.53464 -14.39182 -13.96166 -13.66439 -13.50763 -13.38780 -13.05190 -12.91919 -12.65009 -12.39394 -12.29742 -12.21383 -12.09913 -12.04062 -11.75578 -11.53584 -11.35668 -11.25827 -11.05290 -11.03891 -10.90136 -10.72489 -10.59328 -10.57102 -10.17030 -10.03409 -9.63649 -9.08563 -8.90806 -8.78904 -8.44631 -8.24124 -7.64399 -6.05055 -4.09986 1.20134 1.23823 3.28429 3.35081 3.37941 3.43736 3.59798 3.79984 4.12339 4.41818 4.46311 4.58708 4.76275 4.83885 4.85220 4.95154 4.97912 5.03250 5.23654 5.27577 5.29774 5.34614 5.36862 5.39520 5.41761 5.49293 5.62392 5.64616 5.68389 5.80925 5.86861 5.89049 5.93305 5.94467 6.01502 6.14995 6.20309 6.28498 6.34426 6.38915 6.44038 6.60894 6.85410 6.96984 7.17794 7.44491 7.52948 7.53653 7.66054 7.91170 8.22534 8.41547 8.88897 9.08447 9.55031 11.02983 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.002640 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.248119 B =10601.555199 C =11257.067240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.059 0.941 4 N -0.661 5.661 5 C 0.101 3.899 6 H 0.086 0.914 7 C 0.044 3.956 8 O -0.562 6.562 9 C -0.037 4.037 10 H 0.088 0.912 11 C -0.134 4.134 12 C -0.064 4.064 13 C -0.119 4.119 14 C -0.121 4.121 15 C -0.131 4.131 16 C -0.121 4.121 17 C -0.111 4.111 18 C 0.504 3.496 19 O -0.532 6.532 20 N -0.600 5.600 21 C 0.082 3.918 22 C 0.246 3.754 23 C -0.526 4.526 24 H 0.055 0.945 25 C 0.061 3.939 26 N -0.894 5.894 27 Si 0.898 3.102 28 H -0.281 1.281 29 H -0.285 1.285 30 H -0.275 1.275 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.367 0.633 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.378 0.622 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.122 0.878 46 H 0.049 0.951 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.032 0.968 50 H 0.044 0.956 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.621 9.923 -22.937 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.048 4.048 3 H 0.077 0.923 4 N -0.297 5.297 5 C -0.009 4.009 6 H 0.104 0.896 7 C -0.036 4.036 8 O -0.366 6.366 9 C -0.056 4.056 10 H 0.107 0.893 11 C -0.191 4.191 12 C -0.065 4.065 13 C -0.137 4.137 14 C -0.139 4.139 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.130 4.130 18 C 0.290 3.710 19 O -0.408 6.408 20 N -0.333 5.333 21 C -0.062 4.062 22 C 0.126 3.874 23 C -0.565 4.565 24 H 0.074 0.926 25 C -0.141 4.141 26 N -0.533 5.533 27 Si 0.726 3.274 28 H -0.207 1.207 29 H -0.210 1.210 30 H -0.200 1.200 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.191 0.809 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.224 0.776 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.140 0.860 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.050 0.950 50 H 0.062 0.938 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.322 8.569 -22.971 25.587 hybrid contribution 2.182 1.636 0.639 2.801 sum -5.140 10.206 -22.332 25.086 Atomic orbital electron populations 1.21996 0.92981 1.03311 1.02050 1.21452 0.97092 0.96320 0.89924 0.92317 1.60413 1.36362 1.30574 1.02371 1.21727 0.94183 0.93482 0.91542 0.89585 1.22923 0.89170 0.92282 0.99216 1.86458 1.17095 1.37064 1.96023 1.20006 1.00084 0.95671 0.89836 0.89347 1.21728 0.95168 1.00212 1.02009 1.19954 0.94486 0.95974 0.96066 1.21036 0.98956 0.95515 0.98223 1.21117 0.98555 0.99310 0.94907 1.21103 0.95612 0.98794 0.99379 1.21144 0.98963 0.95744 0.98072 1.21130 0.98147 0.99432 0.94243 1.20260 0.81029 0.85261 0.84461 1.90667 1.37855 1.26470 1.85857 1.48087 1.49697 1.28187 1.07290 1.21789 0.93908 0.88170 1.02338 1.19289 0.94143 0.93772 0.80148 1.21406 1.04910 1.18988 1.11166 0.92648 1.24934 0.97929 0.94956 0.96293 1.69928 1.39044 1.25992 1.18313 0.86501 0.83685 0.78692 0.78552 1.20666 1.21037 1.19980 0.92496 0.91527 0.90992 0.80855 0.94025 0.93451 0.77581 0.93309 0.93509 0.90469 0.86216 0.86367 0.86514 0.86390 0.86018 0.93283 0.90907 0.92484 0.94997 0.93784 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.03 37.16 0.34 -1.47 16 2 C 0.07 0.99 2.02 -68.86 -0.14 0.85 16 3 H 0.06 0.83 6.36 -51.93 -0.33 0.50 16 4 N -0.66 -9.73 5.17 -100.95 -0.52 -10.25 16 5 C 0.10 1.18 1.63 -67.71 -0.11 1.06 16 6 H 0.09 0.91 6.38 -51.93 -0.33 0.57 16 7 C 0.04 0.50 6.35 37.16 0.24 0.74 16 8 O -0.56 -6.77 12.14 -35.23 -0.43 -7.19 16 9 C -0.04 -0.41 2.14 -91.77 -0.20 -0.60 16 10 H 0.09 1.12 7.29 -51.93 -0.38 0.74 16 11 C -0.13 -1.43 8.85 37.16 0.33 -1.11 16 12 C -0.06 -0.65 3.61 -104.62 -0.38 -1.03 16 13 C -0.12 -1.10 8.71 -39.59 -0.34 -1.45 16 14 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 15 C -0.13 -1.09 10.05 -39.58 -0.40 -1.48 16 16 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 17 C -0.11 -1.09 9.67 -39.58 -0.38 -1.48 16 18 C 0.50 10.52 7.10 -10.98 -0.08 10.45 16 19 O -0.53 -13.50 15.22 5.56 0.08 -13.42 16 20 N -0.60 -12.69 2.86 -182.96 -0.52 -13.21 16 21 C 0.08 1.28 8.80 59.84 0.53 1.80 16 22 C 0.25 6.46 5.16 -5.19 -0.03 6.44 16 23 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 24 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 25 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 26 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 27 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 29 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 31 H 0.06 0.58 7.43 -51.93 -0.39 0.19 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.82 4.53 -51.93 -0.24 0.59 16 34 H 0.37 6.52 6.66 -39.29 -0.26 6.26 16 35 H 0.04 0.51 7.38 -51.93 -0.38 0.12 16 36 H 0.05 0.49 7.40 -51.92 -0.38 0.11 16 37 H 0.38 3.17 9.12 45.56 0.42 3.59 16 38 H 0.05 0.47 7.38 -51.93 -0.38 0.09 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.95 7.60 -51.93 -0.39 0.55 16 41 H 0.12 0.98 7.11 -52.49 -0.37 0.61 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.12 1.15 7.95 -52.49 -0.42 0.73 16 46 H 0.05 0.65 6.95 -51.93 -0.36 0.29 16 47 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 48 H 0.06 0.73 6.01 -51.93 -0.31 0.42 16 49 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 50 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 51 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 403.27 15.07 6.08 6.08 Total: -1.00 -33.71 403.27 -8.84 -42.54 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.40 Total: 8.30 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.84 Total: -3.78 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.31 Total: -49.42 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.34 Total: -20.61 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.71 -8.84 -42.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613389333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.074 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds