Wall clock time and date at job start Tue Mar 31 2020 19:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.47197 * 2 1 4 4 N 1.46899 * 109.47186 * 239.99983 * 2 1 3 5 5 C 1.46901 * 110.99801 * 84.99908 * 4 2 1 6 6 H 1.08991 * 109.47323 * 325.00430 * 5 4 2 7 7 C 1.52999 * 109.46780 * 85.00017 * 5 4 2 8 8 O 1.42903 * 109.47256 * 65.00343 * 7 5 4 9 9 C 1.53002 * 109.47019 * 204.99934 * 5 4 2 10 10 H 1.08995 * 109.47242 * 299.99962 * 9 5 4 11 11 C 1.52998 * 109.47059 * 60.00709 * 9 5 4 12 12 C 1.50707 * 109.46768 * 180.02562 * 9 5 4 13 13 C 1.38234 * 120.00101 * 299.72857 * 12 9 5 14 14 C 1.38232 * 119.99592 * 179.81238 * 13 12 9 15 15 C 1.38231 * 120.00288 * 0.39341 * 14 13 12 16 16 C 1.38236 * 120.00269 * 359.85935 * 15 14 13 17 17 C 1.38237 * 119.99649 * 359.95849 * 16 15 14 18 18 C 1.50704 * 109.46807 * 120.00243 * 2 1 3 19 19 O 1.21279 * 119.99948 * 120.00068 * 18 2 1 20 20 N 1.34775 * 119.99941 * 299.99602 * 18 2 1 21 21 C 1.46492 * 120.00156 * 0.02562 * 20 18 2 22 22 C 1.46503 * 119.99799 * 180.02562 * 20 18 2 23 23 C 1.50699 * 109.47072 * 90.00121 * 22 20 18 24 24 H 1.08001 * 119.99480 * 0.02562 * 23 22 20 25 25 C 1.37873 * 119.99773 * 179.97438 * 23 22 20 26 26 N 1.31512 * 120.00426 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99744 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47439 * 90.00218 * 27 25 23 29 29 H 1.48502 * 109.47120 * 210.00383 * 27 25 23 30 30 H 1.48502 * 109.47213 * 329.99777 * 27 25 23 31 31 H 1.09003 * 109.46737 * 59.99919 * 1 2 3 32 32 H 1.09001 * 109.46891 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47093 * 299.99772 * 1 2 3 34 34 H 1.00899 * 111.00004 * 208.95518 * 4 2 1 35 35 H 1.08997 * 109.47286 * 304.99903 * 7 5 4 36 36 H 1.09008 * 109.47201 * 184.99683 * 7 5 4 37 37 H 0.96700 * 114.00311 * 180.02562 * 8 7 5 38 38 H 1.08995 * 109.47704 * 59.99536 * 11 9 5 39 39 H 1.09004 * 109.46726 * 180.02562 * 11 9 5 40 40 H 1.09003 * 109.46953 * 299.99249 * 11 9 5 41 41 H 1.07995 * 119.99984 * 359.97438 * 13 12 9 42 42 H 1.08002 * 119.99901 * 180.23399 * 14 13 12 43 43 H 1.08008 * 120.00213 * 179.83395 * 15 14 13 44 44 H 1.07997 * 120.00250 * 179.97438 * 16 15 14 45 45 H 1.08002 * 120.00211 * 180.02562 * 17 16 15 46 46 H 1.09000 * 109.47350 * 89.99808 * 21 20 18 47 47 H 1.08996 * 109.47278 * 209.99510 * 21 20 18 48 48 H 1.09000 * 109.47424 * 329.99860 * 21 20 18 49 49 H 1.08996 * 109.47157 * 210.00465 * 22 20 18 50 50 H 1.08999 * 109.47135 * 330.00263 * 22 20 18 51 51 H 0.97000 * 120.00464 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 1 1.2578 0.9330 -2.2906 7 6 3.4112 0.9809 -2.3222 8 8 4.4882 0.0612 -2.5129 9 6 1.9771 -0.5797 -3.6454 10 1 2.8019 -1.2899 -3.7016 11 6 0.6484 -1.3378 -3.6700 12 6 2.0421 0.3592 -4.8225 13 6 1.0899 1.3503 -4.9695 14 6 1.1518 2.2138 -6.0472 15 6 2.1613 2.0811 -6.9821 16 6 3.1106 1.0866 -6.8380 17 6 3.0508 0.2254 -5.7583 18 6 2.0324 -0.7105 1.2305 19 8 2.7296 -1.6966 1.1192 20 7 1.7068 -0.2500 2.4546 21 6 0.8642 0.9408 2.5890 22 6 2.1955 -0.9404 3.6507 23 6 3.5229 -0.3564 4.0607 24 1 3.9586 0.4488 3.4877 25 6 4.1805 -0.8493 5.1677 26 7 3.6497 -1.8295 5.8656 27 14 5.8255 -0.1250 5.6762 28 1 5.6009 1.0001 6.6190 29 1 6.6432 -1.1716 6.3405 30 1 6.5405 0.3723 4.4734 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.9174 -1.1205 -1.0287 35 1 3.5263 1.4810 -1.3607 36 1 3.4211 1.7226 -3.1211 37 1 5.3629 0.4734 -2.5083 38 1 -0.1764 -0.6276 -3.6137 39 1 0.5736 -1.9098 -4.5949 40 1 0.6018 -2.0169 -2.8186 41 1 0.2990 1.4517 -4.2411 42 1 0.4100 2.9906 -6.1601 43 1 2.2081 2.7541 -7.8256 44 1 3.8990 0.9826 -7.5687 45 1 3.7927 -0.5513 -5.6453 46 1 -0.1837 0.6426 2.6225 47 1 1.1219 1.4663 3.5085 48 1 1.0274 1.5996 1.7361 49 1 1.4776 -0.8153 4.4613 50 1 2.3170 -2.0016 3.4336 51 1 4.1125 -2.1765 6.6443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613389333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:49 Heat of formation + Delta-G solvation = -81.360900 kcal Electronic energy + Delta-G solvation = -29798.899335 eV Core-core repulsion = 25890.176533 eV Total energy + Delta-G solvation = -3908.722802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.20475 -40.47350 -38.70444 -36.71975 -36.51720 -35.23006 -34.57483 -31.76267 -31.67967 -29.98220 -29.55335 -28.35282 -27.51502 -25.69825 -24.77775 -23.84052 -23.37955 -22.25205 -20.79686 -19.98377 -18.72089 -18.44670 -17.95274 -17.58829 -17.30471 -16.73352 -16.42857 -16.18337 -15.99941 -15.90219 -15.40216 -15.14165 -14.74689 -14.68020 -14.25358 -14.10902 -14.05393 -13.99171 -13.64349 -13.53014 -13.37668 -13.31257 -13.08300 -12.98306 -12.89385 -12.81862 -12.63587 -12.52934 -12.27788 -12.13554 -12.07215 -11.93252 -11.71485 -11.52666 -11.42341 -10.93849 -10.65909 -10.50016 -9.73828 -9.61405 -9.43007 -9.27231 -8.23897 -6.39067 0.53418 0.58219 1.34293 1.37687 1.47620 1.81570 2.24850 2.41073 2.92241 3.05402 3.10284 3.51555 3.64405 3.74824 3.99315 4.05146 4.08090 4.14857 4.24383 4.27208 4.37137 4.40751 4.43439 4.49223 4.60505 4.65347 4.68058 4.72280 4.79812 4.83418 4.85514 4.92333 5.00077 5.02124 5.13471 5.21086 5.21951 5.25103 5.35494 5.37652 5.50978 5.53899 5.68152 5.70678 5.81551 5.87133 6.03997 6.08197 6.20450 6.32580 6.68270 6.78467 6.80615 7.26329 7.46118 8.83154 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.002640 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.248119 B =10601.555199 C =11257.067240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.080 3.920 3 H 0.080 0.920 4 N -0.669 5.669 5 C 0.102 3.898 6 H 0.107 0.893 7 C 0.047 3.953 8 O -0.581 6.581 9 C -0.028 4.028 10 H 0.063 0.937 11 C -0.129 4.129 12 C -0.073 4.073 13 C -0.125 4.125 14 C -0.124 4.124 15 C -0.134 4.134 16 C -0.128 4.128 17 C -0.127 4.127 18 C 0.493 3.507 19 O -0.590 6.590 20 N -0.607 5.607 21 C 0.075 3.925 22 C 0.260 3.740 23 C -0.541 4.541 24 H 0.051 0.949 25 C 0.007 3.993 26 N -0.928 5.928 27 Si 0.968 3.032 28 H -0.262 1.262 29 H -0.281 1.281 30 H -0.274 1.274 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.348 0.652 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.391 0.609 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.132 0.868 45 H 0.115 0.885 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.093 0.907 49 H 0.025 0.975 50 H -0.005 1.005 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 13.183 -24.519 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 H 0.098 0.902 4 N -0.302 5.302 5 C -0.008 4.008 6 H 0.125 0.875 7 C -0.032 4.032 8 O -0.388 6.388 9 C -0.047 4.047 10 H 0.081 0.919 11 C -0.186 4.186 12 C -0.074 4.074 13 C -0.143 4.143 14 C -0.141 4.141 15 C -0.152 4.152 16 C -0.146 4.146 17 C -0.146 4.146 18 C 0.282 3.718 19 O -0.471 6.471 20 N -0.338 5.338 21 C -0.067 4.067 22 C 0.138 3.862 23 C -0.580 4.580 24 H 0.070 0.930 25 C -0.192 4.192 26 N -0.568 5.568 27 Si 0.793 3.207 28 H -0.187 1.187 29 H -0.207 1.207 30 H -0.199 1.199 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.240 0.760 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.151 0.849 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.150 0.850 45 H 0.133 0.867 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.111 0.889 49 H 0.043 0.957 50 H 0.013 0.987 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.238 11.887 -24.569 28.510 hybrid contribution 2.438 0.599 1.067 2.728 sum -5.800 12.486 -23.502 27.238 Atomic orbital electron populations 1.22008 0.90330 1.03000 1.04379 1.21459 0.98821 0.96067 0.86984 0.90243 1.60499 1.35153 1.31597 1.02985 1.21854 0.95142 0.93355 0.90402 0.87487 1.22897 0.88847 0.92208 0.99251 1.86442 1.18224 1.38099 1.96029 1.19843 0.99216 0.95436 0.90252 0.91889 1.21667 0.95604 1.00172 1.01155 1.19849 0.95327 0.96443 0.95781 1.21205 0.98898 0.95249 0.98919 1.21426 0.98896 0.99459 0.94369 1.21427 0.95144 0.98688 0.99962 1.21368 0.99639 0.95608 0.97956 1.21202 0.98365 0.99942 0.95041 1.21362 0.79911 0.84760 0.85806 1.90631 1.40426 1.29210 1.86806 1.48098 1.50209 1.29482 1.06006 1.22130 0.94374 0.86476 1.03697 1.18745 0.93766 0.91655 0.82001 1.21663 1.05918 1.19034 1.11388 0.93029 1.25874 1.01854 0.95249 0.96265 1.70051 1.40752 1.27164 1.18803 0.85405 0.78658 0.78346 0.78326 1.18651 1.20663 1.19853 0.89183 0.93227 0.89546 0.83115 0.94713 0.92069 0.76036 0.91704 0.93375 0.92501 0.84937 0.84173 0.84423 0.84969 0.86733 0.90421 0.91540 0.88887 0.95726 0.98685 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.03 71.99 0.65 -2.41 16 2 C 0.08 2.30 2.02 44.17 0.09 2.39 16 3 H 0.08 1.99 6.36 -2.39 -0.02 1.98 16 4 N -0.67 -19.53 5.17 -473.30 -2.45 -21.98 16 5 C 0.10 2.22 1.63 44.92 0.07 2.30 16 6 H 0.11 1.87 6.38 -2.39 -0.02 1.86 16 7 C 0.05 1.02 6.35 71.98 0.46 1.48 16 8 O -0.58 -14.12 12.14 -148.98 -1.81 -15.93 16 9 C -0.03 -0.61 2.14 -11.54 -0.02 -0.63 16 10 H 0.06 1.67 7.29 -2.39 -0.02 1.65 16 11 C -0.13 -2.65 8.85 71.98 0.64 -2.01 16 12 C -0.07 -1.38 3.61 -19.86 -0.07 -1.45 16 13 C -0.12 -1.95 8.71 22.27 0.19 -1.75 16 14 C -0.12 -1.68 10.05 22.27 0.22 -1.46 16 15 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 16 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 17 C -0.13 -2.40 9.67 22.27 0.22 -2.19 16 18 C 0.49 20.96 7.10 87.66 0.62 21.58 16 19 O -0.59 -31.65 15.22 -3.03 -0.05 -31.69 16 20 N -0.61 -25.90 2.86 -851.16 -2.43 -28.33 16 21 C 0.08 2.18 8.80 127.77 1.12 3.31 16 22 C 0.26 14.26 5.16 85.63 0.44 14.70 16 23 C -0.54 -31.56 9.39 25.60 0.24 -31.32 16 24 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 25 C 0.01 0.38 5.46 84.65 0.46 0.84 16 26 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 27 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 28 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 29 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 30 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 31 H 0.09 1.42 7.43 -2.39 -0.02 1.40 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.64 4.53 -2.39 -0.01 1.63 16 34 H 0.35 12.82 6.66 -89.69 -0.60 12.22 16 35 H 0.03 0.79 7.38 -2.39 -0.02 0.77 16 36 H 0.06 1.15 7.40 -2.38 -0.02 1.14 16 37 H 0.39 6.59 9.12 -74.06 -0.68 5.92 16 38 H 0.06 1.11 7.38 -2.39 -0.02 1.09 16 39 H 0.05 0.95 8.14 -2.38 -0.02 0.94 16 40 H 0.06 1.40 7.60 -2.39 -0.02 1.38 16 41 H 0.13 1.66 7.11 -2.91 -0.02 1.64 16 42 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 43 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 44 H 0.13 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.11 2.22 7.95 -2.91 -0.02 2.20 16 46 H 0.08 1.84 6.95 -2.39 -0.02 1.82 16 47 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 48 H 0.09 2.03 6.01 -2.39 -0.01 2.02 16 49 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 50 H 0.00 -0.32 7.42 -2.39 -0.02 -0.34 16 51 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -77.54 403.27 1.03 -76.51 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.33 Total: 30.69 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 5.78 Total: -0.04 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -4.59 Total: -106.82 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -1.86 Total: -47.62 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -77.54 1.03 -76.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613389333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.853 kcal (2) G-P(sol) polarization free energy of solvation -77.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds