Wall clock time and date at job start Tue Mar 31 2020 19:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46695 * 2 1 4 4 C 1.50705 * 109.46751 * 239.99908 * 2 1 3 5 5 C 1.38227 * 120.00188 * 299.72662 * 4 2 1 6 6 C 1.38235 * 119.99743 * 179.79442 * 5 4 2 7 7 C 1.38236 * 119.99974 * 0.43634 * 6 5 4 8 8 C 1.38230 * 119.99819 * 359.81455 * 7 6 5 9 9 C 1.38231 * 120.00224 * 359.97438 * 8 7 6 10 10 C 1.53001 * 109.47112 * 119.99989 * 2 1 3 11 11 H 1.09004 * 109.46826 * 60.23642 * 10 2 1 12 12 C 1.52996 * 109.46940 * 180.23252 * 10 2 1 13 13 O 1.42905 * 109.47102 * 55.73994 * 12 10 2 14 14 N 1.46893 * 109.47042 * 300.23391 * 10 2 1 15 15 C 1.46904 * 111.00221 * 106.77168 * 14 10 2 16 16 H 1.08999 * 109.46742 * 324.53555 * 15 14 10 17 17 C 1.53005 * 109.47248 * 84.53396 * 15 14 10 18 18 C 1.50696 * 109.47518 * 204.53666 * 15 14 10 19 19 O 1.21286 * 119.99842 * 333.65936 * 18 15 14 20 20 N 1.34770 * 120.00475 * 153.65374 * 18 15 14 21 21 C 1.46503 * 120.00499 * 183.89758 * 20 18 15 22 22 C 1.46503 * 119.99738 * 3.90399 * 20 18 15 23 23 C 1.50696 * 109.47320 * 91.75420 * 22 20 18 24 24 H 1.07997 * 120.00013 * 359.97438 * 23 22 20 25 25 C 1.37882 * 120.00183 * 180.02562 * 23 22 20 26 26 N 1.31521 * 119.99527 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00117 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47393 * 359.97438 * 27 25 23 29 29 H 1.48508 * 109.47208 * 119.99616 * 27 25 23 30 30 H 1.48498 * 109.47180 * 239.99384 * 27 25 23 31 31 H 1.09004 * 109.46811 * 185.75859 * 1 2 3 32 32 H 1.08999 * 109.46779 * 305.75252 * 1 2 3 33 33 H 1.08999 * 109.47131 * 65.75843 * 1 2 3 34 34 H 1.08002 * 120.00303 * 359.97438 * 5 4 2 35 35 H 1.08001 * 119.99978 * 180.27318 * 6 5 4 36 36 H 1.08003 * 119.99485 * 179.84083 * 7 6 5 37 37 H 1.08003 * 119.99656 * 180.02562 * 8 7 6 38 38 H 1.07997 * 119.99815 * 180.02562 * 9 8 7 39 39 H 1.09005 * 109.46984 * 175.73941 * 12 10 2 40 40 H 1.09005 * 109.47246 * 295.73962 * 12 10 2 41 41 H 0.96696 * 113.99788 * 179.97438 * 13 12 10 42 42 H 1.00901 * 111.00601 * 342.81331 * 14 10 2 43 43 H 1.08994 * 109.46972 * 178.88357 * 17 15 14 44 44 H 1.08998 * 109.46916 * 298.87951 * 17 15 14 45 45 H 1.09003 * 109.46914 * 58.87792 * 17 15 14 46 46 H 1.08994 * 109.46865 * 275.13120 * 21 20 18 47 47 H 1.08999 * 109.46761 * 35.12840 * 21 20 18 48 48 H 1.08997 * 109.46819 * 155.12807 * 21 20 18 49 49 H 1.09000 * 109.46772 * 211.75495 * 22 20 18 50 50 H 1.09004 * 109.47240 * 331.75127 * 22 20 18 51 51 H 0.97001 * 119.99277 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.7030 -2.0355 -1.4464 6 6 2.1602 -2.6858 -2.5773 7 6 2.9542 -2.0137 -3.4877 8 6 3.2878 -0.6902 -3.2691 9 6 2.8269 -0.0386 -2.1404 10 6 2.0401 -0.7213 1.2493 11 1 1.6801 -1.7502 1.2471 12 6 3.5700 -0.7162 1.2521 13 8 4.0421 0.6291 1.1548 14 7 1.5458 -0.0320 2.4486 15 6 0.4860 -0.8102 3.1039 16 1 -0.1161 -1.3132 2.3472 17 6 1.1167 -1.8525 4.0295 18 6 -0.3899 0.1134 3.9105 19 8 0.0597 1.1553 4.3386 20 7 -1.6729 -0.2181 4.1560 21 6 -2.5484 0.7175 4.8663 22 6 -2.1922 -1.5143 3.7127 23 6 -2.0228 -2.5272 4.8156 24 1 -1.5729 -2.2348 5.7528 25 6 -2.4412 -3.8275 4.6277 26 7 -2.9886 -4.1837 3.4861 27 14 -2.2305 -5.0831 5.9946 28 1 -1.5924 -4.4348 7.1684 29 1 -3.5600 -5.6171 6.3855 30 1 -1.3713 -6.1959 5.5164 31 1 -0.3633 -1.0225 0.1031 32 1 -0.3633 0.6005 0.8340 33 1 -0.3633 0.4219 -0.9370 34 1 1.0861 -2.5618 -0.7331 35 1 1.8993 -3.7198 -2.7482 36 1 3.3135 -2.5227 -4.3699 37 1 3.9078 -0.1650 -3.9806 38 1 3.0872 0.9956 -1.9699 39 1 3.9331 -1.1625 2.1780 40 1 3.9369 -1.2923 0.4027 41 1 5.0057 0.7085 1.1514 42 1 1.2256 0.8983 2.2250 43 1 0.3302 -2.4166 4.5307 44 1 1.7344 -2.5328 3.4432 45 1 1.7348 -1.3507 4.7740 46 1 -2.4176 0.5927 5.9411 47 1 -2.2924 1.7391 4.5853 48 1 -3.5863 0.5168 4.6007 49 1 -3.2499 -1.4174 3.4677 50 1 -1.6434 -1.8430 2.8301 51 1 -3.2832 -5.0984 3.3542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613389335.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:54 Heat of formation + Delta-G solvation = -62.718273 kcal Electronic energy + Delta-G solvation = -30479.973116 eV Core-core repulsion = 26572.058719 eV Total energy + Delta-G solvation = -3907.914397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.04585 -39.18843 -37.54997 -35.60620 -34.97057 -33.65445 -32.57660 -30.94017 -30.38668 -29.03014 -27.88449 -27.36319 -26.21115 -23.87389 -23.16588 -22.70381 -22.44476 -21.32786 -19.85380 -18.29350 -17.34744 -16.77095 -16.61616 -16.38996 -15.84897 -15.48146 -15.23809 -14.89744 -14.61399 -14.41292 -14.19109 -13.92005 -13.58060 -13.31704 -13.23884 -13.05750 -12.88637 -12.50890 -12.22270 -12.20531 -12.06207 -11.97239 -11.82521 -11.53115 -11.45909 -11.35672 -11.21653 -10.98757 -10.95151 -10.85343 -10.68683 -10.65493 -10.53340 -10.15218 -9.77908 -9.76968 -8.95374 -8.91647 -8.79495 -8.58884 -7.96960 -7.73125 -6.23853 -4.29950 1.32576 1.36987 3.18176 3.27371 3.30692 3.39669 3.74091 3.84313 4.28602 4.42847 4.49203 4.69425 4.79966 4.95741 4.99026 5.08778 5.09736 5.16911 5.31020 5.39974 5.45726 5.49369 5.57457 5.64054 5.72925 5.75626 5.82984 5.94433 5.95294 6.00849 6.01687 6.04952 6.13651 6.15066 6.28763 6.37664 6.42152 6.43926 6.47992 6.52822 6.68468 6.70718 6.97381 7.00960 7.10862 7.30521 7.52163 7.70935 7.72735 7.79402 8.00170 8.30531 8.75038 9.00520 9.36977 10.82630 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.003614 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.733255 B = 7745.173545 C = 8778.397479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.072 4.072 3 H 0.091 0.909 4 C -0.061 4.061 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.130 4.130 8 C -0.123 4.123 9 C -0.112 4.112 10 C 0.098 3.902 11 H 0.085 0.915 12 C 0.093 3.907 13 O -0.561 6.561 14 N -0.657 5.657 15 C 0.073 3.927 16 H 0.071 0.929 17 C -0.140 4.140 18 C 0.512 3.488 19 O -0.563 6.563 20 N -0.600 5.600 21 C 0.097 3.903 22 C 0.235 3.765 23 C -0.534 4.534 24 H 0.063 0.937 25 C 0.066 3.934 26 N -0.890 5.890 27 Si 0.893 3.107 28 H -0.271 1.271 29 H -0.282 1.282 30 H -0.282 1.282 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.369 0.631 42 H 0.349 0.651 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.065 0.935 49 H 0.034 0.966 50 H 0.040 0.960 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.568 4.225 -11.919 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 H 0.109 0.891 4 C -0.062 4.062 5 C -0.135 4.135 6 C -0.136 4.136 7 C -0.148 4.148 8 C -0.141 4.141 9 C -0.131 4.131 10 C -0.012 4.012 11 H 0.103 0.897 12 C 0.015 3.985 13 O -0.365 6.365 14 N -0.290 5.290 15 C -0.039 4.039 16 H 0.089 0.911 17 C -0.198 4.198 18 C 0.299 3.701 19 O -0.443 6.443 20 N -0.331 5.331 21 C -0.047 4.047 22 C 0.115 3.885 23 C -0.572 4.572 24 H 0.081 0.919 25 C -0.137 4.137 26 N -0.528 5.528 27 Si 0.721 3.279 28 H -0.195 1.195 29 H -0.208 1.208 30 H -0.207 1.207 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.215 0.785 42 H 0.170 0.830 43 H 0.113 0.887 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.509 4.492 -11.366 16.118 hybrid contribution -0.223 -1.033 0.071 1.059 sum 10.286 3.459 -11.295 15.663 Atomic orbital electron populations 1.21942 0.94178 1.02614 1.02017 1.20773 0.95722 1.00474 0.92207 0.89121 1.19800 0.96721 0.93964 0.95703 1.21108 1.00127 0.94466 0.97782 1.21141 0.98016 0.99907 0.94558 1.21101 0.99290 0.94964 0.99495 1.21108 1.00362 0.94965 0.97635 1.21075 0.97832 0.99961 0.94183 1.21778 0.93658 0.97994 0.87817 0.89746 1.22196 0.94061 0.83392 0.98881 1.86507 1.25665 1.27078 1.97231 1.60436 1.37908 1.05534 1.25114 1.21583 0.91170 0.94122 0.96978 0.91110 1.21859 1.01819 0.97149 0.98975 1.20471 0.82245 0.86277 0.81111 1.90611 1.73567 1.26566 1.53564 1.48165 1.09982 1.19380 1.55617 1.21406 0.93841 0.92780 0.96638 1.19527 0.95324 0.77902 0.95773 1.21488 1.40890 0.94060 1.00786 0.91874 1.24929 0.94687 0.98310 0.95760 1.69930 1.40340 1.18875 1.23665 0.86505 0.78024 0.81233 0.82177 1.19542 1.20838 1.20749 0.91998 0.92406 0.92268 0.85951 0.86211 0.86518 0.86464 0.86154 0.93297 0.94165 0.78541 0.83013 0.88680 0.93079 0.92673 0.93498 0.92431 0.91586 0.94770 0.94258 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 7.80 37.16 0.29 -1.71 16 2 C -0.07 -0.91 1.77 -91.77 -0.16 -1.08 16 3 H 0.09 1.21 7.30 -51.93 -0.38 0.83 16 4 C -0.06 -0.73 3.61 -104.63 -0.38 -1.10 16 5 C -0.12 -1.38 8.77 -39.59 -0.35 -1.73 16 6 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 7 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 8 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 9 C -0.11 -1.23 9.67 -39.59 -0.38 -1.62 16 10 C 0.10 1.35 1.75 -67.72 -0.12 1.23 16 11 H 0.08 1.20 6.41 -51.93 -0.33 0.87 16 12 C 0.09 1.16 6.55 37.16 0.24 1.40 16 13 O -0.56 -6.82 12.74 -35.23 -0.45 -7.27 16 14 N -0.66 -10.82 5.59 -100.95 -0.56 -11.38 16 15 C 0.07 1.36 1.54 -68.86 -0.11 1.25 16 16 H 0.07 1.33 4.66 -51.93 -0.24 1.09 16 17 C -0.14 -2.62 9.35 37.16 0.35 -2.27 16 18 C 0.51 10.76 6.67 -10.99 -0.07 10.69 16 19 O -0.56 -13.03 15.98 5.55 0.09 -12.94 16 20 N -0.60 -12.65 2.86 -182.96 -0.52 -13.17 16 21 C 0.10 1.80 10.39 59.85 0.62 2.42 16 22 C 0.23 5.39 5.00 -5.19 -0.03 5.37 16 23 C -0.53 -13.37 7.22 -34.44 -0.25 -13.62 16 24 H 0.06 1.64 7.78 -52.49 -0.41 1.23 16 25 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 26 N -0.89 -23.61 13.29 55.43 0.74 -22.87 16 27 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 31 H 0.06 0.86 7.31 -51.93 -0.38 0.48 16 32 H 0.06 0.84 6.98 -51.93 -0.36 0.48 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.12 1.46 7.17 -52.49 -0.38 1.09 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.12 1.22 7.95 -52.49 -0.42 0.81 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.04 0.46 7.38 -51.93 -0.38 0.08 16 41 H 0.37 2.95 9.12 45.56 0.42 3.36 16 42 H 0.35 6.08 6.68 -39.29 -0.26 5.82 16 43 H 0.09 2.01 5.65 -51.93 -0.29 1.71 16 44 H 0.05 0.85 7.84 -51.93 -0.41 0.44 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.06 1.01 7.64 -51.93 -0.40 0.62 16 48 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 49 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 50 H 0.04 0.92 5.73 -51.93 -0.30 0.63 16 51 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -29.24 403.38 -8.72 -37.96 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -7.43 Total: 12.73 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.63 Total: -4.13 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.35 Total: -47.43 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.36 Total: -20.21 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.24 -8.72 -37.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613389335.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.761 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds