Wall clock time and date at job start Tue Mar 31 2020 19:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46695 * 2 1 4 4 C 1.50705 * 109.46751 * 239.99908 * 2 1 3 5 5 C 1.38227 * 120.00188 * 299.72662 * 4 2 1 6 6 C 1.38235 * 119.99743 * 179.79442 * 5 4 2 7 7 C 1.38236 * 119.99974 * 0.43634 * 6 5 4 8 8 C 1.38230 * 119.99819 * 359.81455 * 7 6 5 9 9 C 1.38231 * 120.00224 * 359.97438 * 8 7 6 10 10 C 1.53001 * 109.47112 * 119.99989 * 2 1 3 11 11 H 1.09004 * 109.46826 * 60.23642 * 10 2 1 12 12 C 1.52996 * 109.46940 * 180.23252 * 10 2 1 13 13 O 1.42905 * 109.47102 * 55.73994 * 12 10 2 14 14 N 1.46893 * 109.47042 * 300.23391 * 10 2 1 15 15 C 1.46904 * 111.00221 * 106.77168 * 14 10 2 16 16 H 1.08999 * 109.46742 * 324.53555 * 15 14 10 17 17 C 1.53005 * 109.47248 * 84.53396 * 15 14 10 18 18 C 1.50696 * 109.47518 * 204.53666 * 15 14 10 19 19 O 1.21286 * 119.99842 * 333.65936 * 18 15 14 20 20 N 1.34770 * 120.00475 * 153.65374 * 18 15 14 21 21 C 1.46503 * 120.00499 * 183.89758 * 20 18 15 22 22 C 1.46503 * 119.99738 * 3.90399 * 20 18 15 23 23 C 1.50696 * 109.47320 * 91.75420 * 22 20 18 24 24 H 1.07997 * 120.00013 * 359.97438 * 23 22 20 25 25 C 1.37882 * 120.00183 * 180.02562 * 23 22 20 26 26 N 1.31521 * 119.99527 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00117 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47393 * 359.97438 * 27 25 23 29 29 H 1.48508 * 109.47208 * 119.99616 * 27 25 23 30 30 H 1.48498 * 109.47180 * 239.99384 * 27 25 23 31 31 H 1.09004 * 109.46811 * 185.75859 * 1 2 3 32 32 H 1.08999 * 109.46779 * 305.75252 * 1 2 3 33 33 H 1.08999 * 109.47131 * 65.75843 * 1 2 3 34 34 H 1.08002 * 120.00303 * 359.97438 * 5 4 2 35 35 H 1.08001 * 119.99978 * 180.27318 * 6 5 4 36 36 H 1.08003 * 119.99485 * 179.84083 * 7 6 5 37 37 H 1.08003 * 119.99656 * 180.02562 * 8 7 6 38 38 H 1.07997 * 119.99815 * 180.02562 * 9 8 7 39 39 H 1.09005 * 109.46984 * 175.73941 * 12 10 2 40 40 H 1.09005 * 109.47246 * 295.73962 * 12 10 2 41 41 H 0.96696 * 113.99788 * 179.97438 * 13 12 10 42 42 H 1.00901 * 111.00601 * 342.81331 * 14 10 2 43 43 H 1.08994 * 109.46972 * 178.88357 * 17 15 14 44 44 H 1.08998 * 109.46916 * 298.87951 * 17 15 14 45 45 H 1.09003 * 109.46914 * 58.87792 * 17 15 14 46 46 H 1.08994 * 109.46865 * 275.13120 * 21 20 18 47 47 H 1.08999 * 109.46761 * 35.12840 * 21 20 18 48 48 H 1.08997 * 109.46819 * 155.12807 * 21 20 18 49 49 H 1.09000 * 109.46772 * 211.75495 * 22 20 18 50 50 H 1.09004 * 109.47240 * 331.75127 * 22 20 18 51 51 H 0.97001 * 119.99277 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.7030 -2.0355 -1.4464 6 6 2.1602 -2.6858 -2.5773 7 6 2.9542 -2.0137 -3.4877 8 6 3.2878 -0.6902 -3.2691 9 6 2.8269 -0.0386 -2.1404 10 6 2.0401 -0.7213 1.2493 11 1 1.6801 -1.7502 1.2471 12 6 3.5700 -0.7162 1.2521 13 8 4.0421 0.6291 1.1548 14 7 1.5458 -0.0320 2.4486 15 6 0.4860 -0.8102 3.1039 16 1 -0.1161 -1.3132 2.3472 17 6 1.1167 -1.8525 4.0295 18 6 -0.3899 0.1134 3.9105 19 8 0.0597 1.1553 4.3386 20 7 -1.6729 -0.2181 4.1560 21 6 -2.5484 0.7175 4.8663 22 6 -2.1922 -1.5143 3.7127 23 6 -2.0228 -2.5272 4.8156 24 1 -1.5729 -2.2348 5.7528 25 6 -2.4412 -3.8275 4.6277 26 7 -2.9886 -4.1837 3.4861 27 14 -2.2305 -5.0831 5.9946 28 1 -1.5924 -4.4348 7.1684 29 1 -3.5600 -5.6171 6.3855 30 1 -1.3713 -6.1959 5.5164 31 1 -0.3633 -1.0225 0.1031 32 1 -0.3633 0.6005 0.8340 33 1 -0.3633 0.4219 -0.9370 34 1 1.0861 -2.5618 -0.7331 35 1 1.8993 -3.7198 -2.7482 36 1 3.3135 -2.5227 -4.3699 37 1 3.9078 -0.1650 -3.9806 38 1 3.0872 0.9956 -1.9699 39 1 3.9331 -1.1625 2.1780 40 1 3.9369 -1.2923 0.4027 41 1 5.0057 0.7085 1.1514 42 1 1.2256 0.8983 2.2250 43 1 0.3302 -2.4166 4.5307 44 1 1.7344 -2.5328 3.4432 45 1 1.7348 -1.3507 4.7740 46 1 -2.4176 0.5927 5.9411 47 1 -2.2924 1.7391 4.5853 48 1 -3.5863 0.5168 4.6007 49 1 -3.2499 -1.4174 3.4677 50 1 -1.6434 -1.8430 2.8301 51 1 -3.2832 -5.0984 3.3542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613389335.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:53 Heat of formation + Delta-G solvation = -81.163527 kcal Electronic energy + Delta-G solvation = -30480.772962 eV Core-core repulsion = 26572.058719 eV Total energy + Delta-G solvation = -3908.714243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.29099 -40.49979 -38.62232 -36.79686 -36.65249 -34.86011 -34.50005 -31.75456 -31.58598 -30.03802 -29.60987 -28.68086 -27.87172 -25.01937 -24.85992 -23.92820 -23.48118 -22.41686 -20.93981 -19.86425 -18.62428 -18.32928 -18.01949 -17.61521 -17.29947 -16.70963 -16.43056 -16.24787 -15.94503 -15.79089 -15.44864 -15.09105 -14.70699 -14.56508 -14.46809 -14.20308 -14.11857 -13.86364 -13.66897 -13.57083 -13.42753 -13.22796 -13.14275 -13.06518 -12.96807 -12.79431 -12.72705 -12.57003 -12.41054 -12.15325 -12.04368 -11.84394 -11.68479 -11.64542 -11.54584 -10.78623 -10.65407 -10.47404 -9.76857 -9.71661 -9.50328 -9.21669 -8.20254 -6.32245 0.50060 0.55597 1.40066 1.44588 1.53815 1.69061 2.24055 2.43194 2.92273 3.09034 3.14574 3.51598 3.66976 3.70716 3.82682 4.06107 4.13011 4.19312 4.22220 4.33213 4.34921 4.40202 4.49349 4.53389 4.61163 4.63292 4.65086 4.68625 4.76052 4.79383 4.84419 4.88573 4.89645 4.94636 5.01731 5.08782 5.14699 5.18652 5.21126 5.26059 5.43849 5.63049 5.64875 5.68180 5.78394 5.81080 6.02496 6.05218 6.17255 6.35011 6.53297 6.80075 7.04848 7.27140 7.39918 8.85578 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.003614 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.733255 B = 7745.173545 C = 8778.397479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 H 0.085 0.915 4 C -0.071 4.071 5 C -0.132 4.132 6 C -0.126 4.126 7 C -0.130 4.130 8 C -0.122 4.122 9 C -0.119 4.119 10 C 0.096 3.904 11 H 0.079 0.921 12 C 0.102 3.898 13 O -0.574 6.574 14 N -0.656 5.656 15 C 0.084 3.916 16 H 0.066 0.934 17 C -0.132 4.132 18 C 0.508 3.492 19 O -0.585 6.585 20 N -0.605 5.605 21 C 0.093 3.907 22 C 0.250 3.750 23 C -0.537 4.537 24 H 0.051 0.949 25 C 0.028 3.972 26 N -0.916 5.916 27 Si 0.949 3.051 28 H -0.272 1.272 29 H -0.280 1.280 30 H -0.276 1.276 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.127 0.873 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.388 0.612 42 H 0.343 0.657 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.045 0.955 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.022 0.978 50 H 0.034 0.966 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.866 3.826 -13.040 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 H 0.103 0.897 4 C -0.072 4.072 5 C -0.150 4.150 6 C -0.144 4.144 7 C -0.148 4.148 8 C -0.140 4.140 9 C -0.137 4.137 10 C -0.014 4.014 11 H 0.097 0.903 12 C 0.023 3.977 13 O -0.381 6.381 14 N -0.289 5.289 15 C -0.029 4.029 16 H 0.083 0.917 17 C -0.191 4.191 18 C 0.297 3.703 19 O -0.466 6.466 20 N -0.335 5.335 21 C -0.050 4.050 22 C 0.129 3.871 23 C -0.576 4.576 24 H 0.069 0.931 25 C -0.173 4.173 26 N -0.555 5.555 27 Si 0.775 3.225 28 H -0.197 1.197 29 H -0.205 1.205 30 H -0.201 1.201 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.151 0.849 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.144 0.856 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.237 0.763 42 H 0.163 0.837 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.040 0.960 50 H 0.052 0.948 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.821 4.097 -12.488 17.677 hybrid contribution -0.605 -0.866 0.368 1.119 sum 11.215 3.231 -12.120 16.826 Atomic orbital electron populations 1.21880 0.94998 1.01616 1.01721 1.20579 0.94872 1.00070 0.92359 0.89652 1.19697 0.97729 0.94071 0.95678 1.21133 1.00761 0.94662 0.98432 1.21370 0.98043 1.00690 0.94281 1.21430 0.98421 0.95058 0.99896 1.21417 1.00011 0.95123 0.97473 1.21216 0.97727 1.00358 0.94441 1.21858 0.94812 0.97441 0.87254 0.90339 1.22040 0.92733 0.83765 0.99149 1.86461 1.27650 1.26758 1.97214 1.60473 1.36653 1.05160 1.26603 1.21441 0.91229 0.93677 0.96506 0.91668 1.21749 1.01115 0.97193 0.98997 1.20888 0.82310 0.86249 0.80880 1.90588 1.73897 1.27545 1.54605 1.48218 1.10483 1.19128 1.55708 1.21550 0.94370 0.92727 0.96329 1.19223 0.94377 0.78405 0.95105 1.21567 1.40624 0.94739 1.00658 0.93051 1.25532 0.94431 0.99778 0.97512 1.70003 1.41075 1.19402 1.25015 0.85639 0.77954 0.79212 0.79723 1.19694 1.20539 1.20149 0.93012 0.94022 0.91413 0.86940 0.84922 0.84089 0.84062 0.85552 0.93776 0.92893 0.76338 0.83662 0.91051 0.91091 0.93116 0.93630 0.91541 0.90021 0.96016 0.94846 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 7.80 71.98 0.56 -3.38 16 2 C -0.06 -1.49 1.77 -11.54 -0.02 -1.51 16 3 H 0.09 2.25 7.30 -2.39 -0.02 2.23 16 4 C -0.07 -1.63 3.61 -19.87 -0.07 -1.70 16 5 C -0.13 -3.03 8.77 22.27 0.20 -2.84 16 6 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 7 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 8 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 9 C -0.12 -2.41 9.67 22.27 0.22 -2.19 16 10 C 0.10 2.63 1.75 44.92 0.08 2.71 16 11 H 0.08 2.24 6.41 -2.38 -0.02 2.23 16 12 C 0.10 2.41 6.55 71.98 0.47 2.88 16 13 O -0.57 -13.14 12.74 -148.98 -1.90 -15.04 16 14 N -0.66 -21.72 5.59 -473.31 -2.65 -24.37 16 15 C 0.08 3.14 1.54 44.17 0.07 3.20 16 16 H 0.07 2.52 4.66 -2.39 -0.01 2.51 16 17 C -0.13 -4.98 9.35 71.98 0.67 -4.31 16 18 C 0.51 21.67 6.67 87.66 0.58 22.25 16 19 O -0.58 -27.25 15.98 -3.05 -0.05 -27.30 16 20 N -0.60 -25.79 2.86 -851.14 -2.43 -28.22 16 21 C 0.09 3.44 10.39 127.77 1.33 4.77 16 22 C 0.25 11.66 5.00 85.63 0.43 12.09 16 23 C -0.54 -27.13 7.22 25.60 0.18 -26.94 16 24 H 0.05 2.69 7.78 -2.91 -0.02 2.66 16 25 C 0.03 1.44 5.46 84.65 0.46 1.90 16 26 N -0.92 -48.63 13.29 21.45 0.28 -48.35 16 27 Si 0.95 40.85 29.54 68.60 2.03 42.88 16 28 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 29 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 30 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 31 H 0.05 1.49 7.31 -2.38 -0.02 1.47 16 32 H 0.04 1.24 6.98 -2.39 -0.02 1.23 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.11 2.74 7.17 -2.91 -0.02 2.72 16 35 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 36 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 38 H 0.13 2.34 7.95 -2.91 -0.02 2.32 16 39 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.05 1.13 7.38 -2.38 -0.02 1.12 16 41 H 0.39 5.46 9.12 -74.06 -0.68 4.79 16 42 H 0.34 12.11 6.68 -89.69 -0.60 11.51 16 43 H 0.07 3.04 5.65 -2.39 -0.01 3.03 16 44 H 0.07 2.34 7.84 -2.39 -0.02 2.32 16 45 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.07 2.33 7.64 -2.39 -0.02 2.31 16 48 H 0.08 2.72 7.85 -2.39 -0.02 2.70 16 49 H 0.02 1.07 7.89 -2.39 -0.02 1.05 16 50 H 0.03 1.61 5.73 -2.39 -0.01 1.60 16 51 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -61.12 403.38 0.78 -60.34 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.34 Total: 39.24 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 5.83 Total: 0.82 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -4.79 Total: -100.94 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -1.95 Total: -42.35 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -61.12 0.78 -60.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613389335.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.824 kcal (2) G-P(sol) polarization free energy of solvation -61.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds