Wall clock time and date at job start Tue Mar 31 2020 19:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47538 * 2 1 4 4 C 1.50700 * 109.46866 * 240.00619 * 2 1 3 5 5 C 1.38235 * 120.00125 * 299.57955 * 4 2 1 6 6 C 1.38233 * 120.00390 * 179.78895 * 5 4 2 7 7 C 1.38236 * 119.99546 * 0.44020 * 6 5 4 8 8 C 1.38226 * 120.00369 * 359.81322 * 7 6 5 9 9 C 1.38234 * 119.99835 * 359.97438 * 8 7 6 10 10 C 1.52990 * 109.47273 * 120.00667 * 2 1 3 11 11 H 1.08997 * 109.47445 * 62.03495 * 10 2 1 12 12 C 1.53008 * 109.47154 * 302.03030 * 10 2 1 13 13 O 1.42901 * 109.47304 * 304.48927 * 12 10 2 14 14 N 1.46900 * 109.47195 * 182.03498 * 10 2 1 15 15 C 1.46904 * 111.00160 * 204.99700 * 14 10 2 16 16 H 1.09001 * 109.46910 * 325.00011 * 15 14 10 17 17 C 1.52996 * 109.46776 * 84.99963 * 15 14 10 18 18 C 1.50696 * 109.47326 * 204.99922 * 15 14 10 19 19 O 1.21279 * 120.00191 * 359.97438 * 18 15 14 20 20 N 1.34779 * 120.00110 * 180.27478 * 18 15 14 21 21 C 1.46497 * 119.99644 * 359.72702 * 20 18 15 22 22 C 1.46496 * 120.00068 * 179.72566 * 20 18 15 23 23 C 1.50692 * 109.47276 * 90.00322 * 22 20 18 24 24 H 1.07999 * 120.00310 * 359.97438 * 23 22 20 25 25 C 1.37881 * 120.00339 * 180.02562 * 23 22 20 26 26 N 1.31516 * 119.99612 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00392 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47330 * 89.99473 * 27 25 23 29 29 H 1.48494 * 109.47388 * 209.99800 * 27 25 23 30 30 H 1.48498 * 109.46898 * 329.99778 * 27 25 23 31 31 H 1.09001 * 109.46958 * 305.46170 * 1 2 3 32 32 H 1.08999 * 109.47556 * 65.45367 * 1 2 3 33 33 H 1.08995 * 109.47278 * 185.46083 * 1 2 3 34 34 H 1.08001 * 119.99804 * 0.02562 * 5 4 2 35 35 H 1.08000 * 120.00103 * 180.27756 * 6 5 4 36 36 H 1.08000 * 119.99636 * 179.83580 * 7 6 5 37 37 H 1.07999 * 120.00032 * 179.97438 * 8 7 6 38 38 H 1.08007 * 119.99689 * 179.97438 * 9 8 7 39 39 H 1.09004 * 109.46653 * 64.48932 * 12 10 2 40 40 H 1.08997 * 109.46852 * 184.48195 * 12 10 2 41 41 H 0.96697 * 113.99966 * 179.97438 * 13 12 10 42 42 H 1.00902 * 111.00362 * 328.95114 * 14 10 2 43 43 H 1.09001 * 109.47362 * 60.00325 * 17 15 14 44 44 H 1.09004 * 109.47255 * 180.02562 * 17 15 14 45 45 H 1.08999 * 109.47447 * 299.99827 * 17 15 14 46 46 H 1.09004 * 109.47438 * 89.99879 * 21 20 18 47 47 H 1.09005 * 109.46909 * 209.99684 * 21 20 18 48 48 H 1.09000 * 109.47667 * 329.99961 * 21 20 18 49 49 H 1.09003 * 109.47161 * 210.00192 * 22 20 18 50 50 H 1.09005 * 109.47221 * 330.00208 * 22 20 18 51 51 H 0.96999 * 119.99656 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 6 1.7055 -2.0362 -1.4451 6 6 2.1625 -2.6865 -2.5760 7 6 2.9540 -2.0135 -3.4879 8 6 3.2851 -0.6891 -3.2708 9 6 2.8244 -0.0376 -2.1421 10 6 2.0400 -0.7213 1.2491 11 1 1.7068 -1.7590 1.2309 12 6 1.4887 -0.0303 2.4979 13 8 1.8377 1.3551 2.4691 14 7 3.5082 -0.6789 1.2739 15 6 4.0540 -1.7961 2.0562 16 1 3.3900 -2.0122 2.8932 17 6 4.1703 -3.0340 1.1646 18 6 5.4173 -1.4241 2.5795 19 8 5.8882 -0.3357 2.3255 20 7 6.1160 -2.3032 3.3248 21 6 5.5475 -3.6182 3.6312 22 6 7.4439 -1.9439 3.8286 23 6 7.3087 -1.2908 5.1799 24 1 6.3315 -1.1564 5.6194 25 6 8.4327 -0.8638 5.8548 26 7 9.6228 -1.0270 5.3194 27 14 8.2651 -0.0536 7.5296 28 1 8.3263 -1.0915 8.5899 29 1 9.3720 0.9172 7.7228 30 1 6.9638 0.6574 7.6074 31 1 -0.3633 0.5962 0.8370 32 1 -0.3634 0.4269 -0.9348 33 1 -0.3633 -1.0229 0.0978 34 1 1.0898 -2.5630 -0.7310 35 1 1.9035 -3.7212 -2.7458 36 1 3.3133 -2.5223 -4.3701 37 1 3.9038 -0.1635 -3.9831 38 1 3.0835 0.9971 -1.9723 39 1 0.4035 -0.1313 2.5199 40 1 1.9147 -0.4940 3.3876 41 1 1.5195 1.8568 3.2320 42 1 3.8857 -0.6742 0.3382 43 1 4.8343 -2.8180 0.3276 44 1 4.5749 -3.8632 1.7451 45 1 3.1842 -3.3031 0.7861 46 1 5.8336 -4.3277 2.8547 47 1 5.9251 -3.9618 4.5943 48 1 4.4609 -3.5436 3.6726 49 1 8.0538 -2.8428 3.9188 50 1 7.9198 -1.2500 3.1356 51 1 10.4135 -0.7269 5.7943 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613389338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:02 Heat of formation + Delta-G solvation = -52.104656 kcal Electronic energy + Delta-G solvation = -30200.129733 eV Core-core repulsion = 26292.675577 eV Total energy + Delta-G solvation = -3907.454156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.14648 -39.05971 -37.67656 -35.51616 -34.67883 -34.21810 -32.51964 -31.05619 -30.55242 -29.42915 -27.62399 -26.85632 -25.97640 -24.69637 -23.74962 -22.82152 -22.13846 -21.24412 -19.80303 -18.36876 -17.47268 -17.00145 -16.60360 -16.38029 -15.61163 -15.55454 -15.37633 -14.80948 -14.59706 -14.44042 -14.31768 -13.85606 -13.66384 -13.45320 -13.32336 -13.17263 -13.04209 -12.92439 -12.59443 -12.23851 -12.23470 -12.09250 -11.86127 -11.71697 -11.60577 -11.36735 -11.18935 -11.17867 -11.05159 -10.80717 -10.79848 -10.50778 -10.45385 -10.08818 -9.83429 -9.54712 -9.05145 -8.83789 -8.71564 -8.37611 -8.04722 -7.50473 -5.98033 -4.02239 1.21196 1.27212 3.33553 3.40333 3.44921 3.62313 3.64506 3.80823 4.31734 4.41599 4.48141 4.54229 4.67694 4.85447 4.87268 4.98358 5.05934 5.17601 5.18664 5.26556 5.28204 5.32014 5.36104 5.36923 5.38623 5.44724 5.48154 5.60726 5.64953 5.78852 5.79441 5.83137 5.88352 5.89731 5.96626 6.00909 6.09658 6.12861 6.31087 6.34297 6.39080 6.54865 6.86892 7.03389 7.25084 7.53298 7.57274 7.66295 7.81063 7.99593 8.31433 8.56464 8.98875 9.29773 9.62931 11.09977 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.003116 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.436365 B = 8985.150910 C = 9812.483355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 H 0.098 0.902 4 C -0.079 4.079 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.125 4.125 8 C -0.117 4.117 9 C -0.111 4.111 10 C 0.099 3.901 11 H 0.054 0.946 12 C 0.087 3.913 13 O -0.550 6.550 14 N -0.647 5.647 15 C 0.068 3.932 16 H 0.092 0.908 17 C -0.189 4.189 18 C 0.510 3.490 19 O -0.517 6.517 20 N -0.607 5.607 21 C 0.084 3.916 22 C 0.248 3.752 23 C -0.523 4.523 24 H 0.056 0.944 25 C 0.060 3.940 26 N -0.896 5.896 27 Si 0.898 3.102 28 H -0.281 1.281 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.371 0.629 42 H 0.348 0.652 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.030 0.970 50 H 0.042 0.958 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.869 -4.876 -13.825 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 H 0.117 0.883 4 C -0.079 4.079 5 C -0.135 4.135 6 C -0.138 4.138 7 C -0.143 4.143 8 C -0.135 4.135 9 C -0.129 4.129 10 C -0.011 4.011 11 H 0.072 0.928 12 C 0.008 3.992 13 O -0.354 6.354 14 N -0.279 5.279 15 C -0.046 4.046 16 H 0.110 0.890 17 C -0.248 4.248 18 C 0.295 3.705 19 O -0.391 6.391 20 N -0.341 5.341 21 C -0.060 4.060 22 C 0.128 3.872 23 C -0.562 4.562 24 H 0.074 0.926 25 C -0.142 4.142 26 N -0.535 5.535 27 Si 0.725 3.275 28 H -0.207 1.207 29 H -0.211 1.211 30 H -0.199 1.199 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.216 0.784 42 H 0.169 0.831 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.048 0.952 50 H 0.061 0.939 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.077 -3.975 -13.976 24.784 hybrid contribution -0.380 -0.399 0.979 1.123 sum -20.457 -4.373 -12.998 24.628 Atomic orbital electron populations 1.21822 0.94047 1.01670 1.02142 1.20245 0.95716 1.00778 0.90206 0.88346 1.19950 0.97530 0.94179 0.96263 1.20961 1.00508 0.94367 0.97623 1.21100 0.98311 0.99713 0.94659 1.21133 0.98795 0.94910 0.99509 1.21172 0.99731 0.94949 0.97652 1.21182 0.97306 1.00308 0.94069 1.21620 0.88915 0.96743 0.93792 0.92833 1.22208 0.96424 0.83257 0.97329 1.86602 1.81032 1.19780 1.47993 1.60084 1.03890 1.44048 1.19889 1.21517 0.96202 0.89747 0.97099 0.89023 1.22691 1.02057 0.99148 1.00854 1.20126 0.86155 0.84868 0.79368 1.90668 1.69462 1.21504 1.57477 1.48121 1.20387 1.14200 1.51418 1.21730 0.97652 0.85663 1.00953 1.19229 0.77203 0.96247 0.94500 1.21450 0.93017 1.39081 1.02631 0.92567 1.24938 0.95141 0.95864 0.98237 1.69937 0.97742 1.47456 1.38385 0.86505 0.77849 0.79249 0.83865 1.20745 1.21108 1.19904 0.91862 0.92432 0.92853 0.86499 0.86357 0.86358 0.86105 0.85775 0.93895 0.93898 0.78363 0.83120 0.92127 0.90238 0.92465 0.93721 0.91033 0.92694 0.95226 0.93947 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.35 37.16 0.31 -0.86 16 2 C -0.05 -0.54 2.06 -91.78 -0.19 -0.72 16 3 H 0.10 1.24 7.37 -51.93 -0.38 0.86 16 4 C -0.08 -0.83 3.57 -104.62 -0.37 -1.20 16 5 C -0.12 -1.11 8.75 -39.58 -0.35 -1.46 16 6 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 7 C -0.13 -1.17 10.05 -39.59 -0.40 -1.56 16 8 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 9 C -0.11 -1.20 9.50 -39.58 -0.38 -1.57 16 10 C 0.10 1.16 1.68 -67.71 -0.11 1.05 16 11 H 0.05 0.55 6.27 -51.93 -0.33 0.23 16 12 C 0.09 1.00 6.23 37.16 0.23 1.23 16 13 O -0.55 -7.24 12.78 -35.23 -0.45 -7.69 16 14 N -0.65 -9.99 5.49 -100.96 -0.55 -10.54 16 15 C 0.07 1.07 1.99 -68.87 -0.14 0.94 16 16 H 0.09 1.34 6.36 -51.93 -0.33 1.01 16 17 C -0.19 -2.39 8.78 37.16 0.33 -2.06 16 18 C 0.51 11.14 7.15 -10.99 -0.08 11.07 16 19 O -0.52 -13.90 16.01 5.56 0.09 -13.81 16 20 N -0.61 -13.27 2.86 -182.96 -0.52 -13.79 16 21 C 0.08 1.36 8.80 59.85 0.53 1.88 16 22 C 0.25 6.69 5.16 -5.20 -0.03 6.66 16 23 C -0.52 -15.26 9.39 -34.44 -0.32 -15.58 16 24 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 25 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 26 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 27 Si 0.90 22.37 29.54 -169.99 -5.02 17.34 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 31 H 0.06 0.51 6.81 -51.93 -0.35 0.16 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.39 7.61 -51.93 -0.40 0.00 16 34 H 0.12 0.96 7.15 -52.49 -0.38 0.58 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.12 1.30 7.95 -52.48 -0.42 0.88 16 39 H 0.04 0.38 6.78 -51.93 -0.35 0.03 16 40 H 0.04 0.54 7.38 -51.93 -0.38 0.16 16 41 H 0.37 3.39 9.12 45.56 0.42 3.81 16 42 H 0.35 5.51 6.84 -39.29 -0.27 5.24 16 43 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 44 H 0.08 0.94 4.51 -51.93 -0.23 0.71 16 45 H 0.06 0.60 7.43 -51.93 -0.39 0.21 16 46 H 0.04 0.62 6.94 -51.93 -0.36 0.26 16 47 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 48 H 0.05 0.73 6.02 -51.93 -0.31 0.41 16 49 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 50 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 51 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 402.96 15.07 6.07 6.07 Total: -1.00 -36.15 402.96 -8.85 -45.00 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.34 Total: 7.52 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.86 Total: -3.60 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.34 Total: -50.84 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.36 Total: -21.50 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.15 -8.85 -45.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613389338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.105 kcal (2) G-P(sol) polarization free energy of solvation -36.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds