Wall clock time and date at job start Tue Mar 31 2020 19:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47538 * 2 1 4 4 C 1.50700 * 109.46866 * 240.00619 * 2 1 3 5 5 C 1.38235 * 120.00125 * 299.57955 * 4 2 1 6 6 C 1.38233 * 120.00390 * 179.78895 * 5 4 2 7 7 C 1.38236 * 119.99546 * 0.44020 * 6 5 4 8 8 C 1.38226 * 120.00369 * 359.81322 * 7 6 5 9 9 C 1.38234 * 119.99835 * 359.97438 * 8 7 6 10 10 C 1.52990 * 109.47273 * 120.00667 * 2 1 3 11 11 H 1.08997 * 109.47445 * 62.03495 * 10 2 1 12 12 C 1.53008 * 109.47154 * 302.03030 * 10 2 1 13 13 O 1.42901 * 109.47304 * 304.48927 * 12 10 2 14 14 N 1.46900 * 109.47195 * 182.03498 * 10 2 1 15 15 C 1.46904 * 111.00160 * 204.99700 * 14 10 2 16 16 H 1.09001 * 109.46910 * 325.00011 * 15 14 10 17 17 C 1.52996 * 109.46776 * 84.99963 * 15 14 10 18 18 C 1.50696 * 109.47326 * 204.99922 * 15 14 10 19 19 O 1.21279 * 120.00191 * 359.97438 * 18 15 14 20 20 N 1.34779 * 120.00110 * 180.27478 * 18 15 14 21 21 C 1.46497 * 119.99644 * 359.72702 * 20 18 15 22 22 C 1.46496 * 120.00068 * 179.72566 * 20 18 15 23 23 C 1.50692 * 109.47276 * 90.00322 * 22 20 18 24 24 H 1.07999 * 120.00310 * 359.97438 * 23 22 20 25 25 C 1.37881 * 120.00339 * 180.02562 * 23 22 20 26 26 N 1.31516 * 119.99612 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00392 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47330 * 89.99473 * 27 25 23 29 29 H 1.48494 * 109.47388 * 209.99800 * 27 25 23 30 30 H 1.48498 * 109.46898 * 329.99778 * 27 25 23 31 31 H 1.09001 * 109.46958 * 305.46170 * 1 2 3 32 32 H 1.08999 * 109.47556 * 65.45367 * 1 2 3 33 33 H 1.08995 * 109.47278 * 185.46083 * 1 2 3 34 34 H 1.08001 * 119.99804 * 0.02562 * 5 4 2 35 35 H 1.08000 * 120.00103 * 180.27756 * 6 5 4 36 36 H 1.08000 * 119.99636 * 179.83580 * 7 6 5 37 37 H 1.07999 * 120.00032 * 179.97438 * 8 7 6 38 38 H 1.08007 * 119.99689 * 179.97438 * 9 8 7 39 39 H 1.09004 * 109.46653 * 64.48932 * 12 10 2 40 40 H 1.08997 * 109.46852 * 184.48195 * 12 10 2 41 41 H 0.96697 * 113.99966 * 179.97438 * 13 12 10 42 42 H 1.00902 * 111.00362 * 328.95114 * 14 10 2 43 43 H 1.09001 * 109.47362 * 60.00325 * 17 15 14 44 44 H 1.09004 * 109.47255 * 180.02562 * 17 15 14 45 45 H 1.08999 * 109.47447 * 299.99827 * 17 15 14 46 46 H 1.09004 * 109.47438 * 89.99879 * 21 20 18 47 47 H 1.09005 * 109.46909 * 209.99684 * 21 20 18 48 48 H 1.09000 * 109.47667 * 329.99961 * 21 20 18 49 49 H 1.09003 * 109.47161 * 210.00192 * 22 20 18 50 50 H 1.09005 * 109.47221 * 330.00208 * 22 20 18 51 51 H 0.96999 * 119.99656 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 6 1.7055 -2.0362 -1.4451 6 6 2.1625 -2.6865 -2.5760 7 6 2.9540 -2.0135 -3.4879 8 6 3.2851 -0.6891 -3.2708 9 6 2.8244 -0.0376 -2.1421 10 6 2.0400 -0.7213 1.2491 11 1 1.7068 -1.7590 1.2309 12 6 1.4887 -0.0303 2.4979 13 8 1.8377 1.3551 2.4691 14 7 3.5082 -0.6789 1.2739 15 6 4.0540 -1.7961 2.0562 16 1 3.3900 -2.0122 2.8932 17 6 4.1703 -3.0340 1.1646 18 6 5.4173 -1.4241 2.5795 19 8 5.8882 -0.3357 2.3255 20 7 6.1160 -2.3032 3.3248 21 6 5.5475 -3.6182 3.6312 22 6 7.4439 -1.9439 3.8286 23 6 7.3087 -1.2908 5.1799 24 1 6.3315 -1.1564 5.6194 25 6 8.4327 -0.8638 5.8548 26 7 9.6228 -1.0270 5.3194 27 14 8.2651 -0.0536 7.5296 28 1 8.3263 -1.0915 8.5899 29 1 9.3720 0.9172 7.7228 30 1 6.9638 0.6574 7.6074 31 1 -0.3633 0.5962 0.8370 32 1 -0.3634 0.4269 -0.9348 33 1 -0.3633 -1.0229 0.0978 34 1 1.0898 -2.5630 -0.7310 35 1 1.9035 -3.7212 -2.7458 36 1 3.3133 -2.5223 -4.3701 37 1 3.9038 -0.1635 -3.9831 38 1 3.0835 0.9971 -1.9723 39 1 0.4035 -0.1313 2.5199 40 1 1.9147 -0.4940 3.3876 41 1 1.5195 1.8568 3.2320 42 1 3.8857 -0.6742 0.3382 43 1 4.8343 -2.8180 0.3276 44 1 4.5749 -3.8632 1.7451 45 1 3.1842 -3.3031 0.7861 46 1 5.8336 -4.3277 2.8547 47 1 5.9251 -3.9618 4.5943 48 1 4.4609 -3.5436 3.6726 49 1 8.0538 -2.8428 3.9188 50 1 7.9198 -1.2500 3.1356 51 1 10.4135 -0.7269 5.7943 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613389338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:01 Heat of formation + Delta-G solvation = -78.743784 kcal Electronic energy + Delta-G solvation = -30201.284892 eV Core-core repulsion = 26292.675577 eV Total energy + Delta-G solvation = -3908.609315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.16738 -40.40442 -38.65581 -36.63712 -36.47826 -35.29936 -34.57100 -31.76815 -31.59200 -30.42317 -29.33189 -27.91008 -27.46471 -25.86657 -25.19068 -23.70190 -23.35622 -22.30195 -20.70818 -19.90475 -18.69384 -18.37819 -18.08619 -17.51166 -17.23723 -16.67925 -16.39778 -16.26407 -16.01856 -15.55827 -15.31877 -15.09840 -14.77782 -14.57071 -14.23719 -14.20246 -14.16333 -14.02064 -13.77309 -13.57871 -13.50651 -13.28081 -13.23644 -12.94323 -12.85991 -12.67470 -12.50633 -12.43733 -12.34960 -12.27231 -12.13657 -12.04831 -11.69255 -11.56867 -11.26059 -10.73822 -10.63946 -10.41743 -9.77355 -9.55530 -9.37838 -9.16899 -8.21723 -6.36816 0.48704 0.54327 1.34900 1.38966 1.49193 1.95716 2.28985 2.43255 2.91455 3.07080 3.21163 3.52818 3.67962 3.77134 3.90683 4.06044 4.09697 4.13924 4.19405 4.31588 4.38289 4.39345 4.43153 4.54089 4.57001 4.63914 4.67371 4.70170 4.73038 4.76978 4.80282 4.84774 4.94830 5.02496 5.02892 5.16739 5.20693 5.21055 5.23992 5.30418 5.36347 5.57719 5.63041 5.67451 5.78681 5.87388 6.07806 6.12065 6.18376 6.41088 6.71900 6.88420 7.04706 7.29996 7.61756 8.85124 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.003116 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.436365 B = 8985.150910 C = 9812.483355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.043 4.043 3 H 0.067 0.933 4 C -0.086 4.086 5 C -0.119 4.119 6 C -0.121 4.121 7 C -0.133 4.133 8 C -0.130 4.130 9 C -0.134 4.134 10 C 0.100 3.900 11 H 0.080 0.920 12 C 0.082 3.918 13 O -0.578 6.578 14 N -0.672 5.672 15 C 0.084 3.916 16 H 0.113 0.887 17 C -0.178 4.178 18 C 0.497 3.503 19 O -0.583 6.583 20 N -0.613 5.613 21 C 0.077 3.923 22 C 0.262 3.738 23 C -0.541 4.541 24 H 0.051 0.949 25 C 0.006 3.994 26 N -0.929 5.929 27 Si 0.969 3.031 28 H -0.260 1.260 29 H -0.281 1.281 30 H -0.274 1.274 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.385 0.615 42 H 0.341 0.659 43 H 0.043 0.957 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.092 0.908 49 H 0.023 0.977 50 H -0.008 1.008 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.815 -7.195 -13.257 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.061 4.061 3 H 0.086 0.914 4 C -0.086 4.086 5 C -0.137 4.137 6 C -0.139 4.139 7 C -0.151 4.151 8 C -0.148 4.148 9 C -0.152 4.152 10 C -0.009 4.009 11 H 0.098 0.902 12 C 0.004 3.996 13 O -0.384 6.384 14 N -0.304 5.304 15 C -0.029 4.029 16 H 0.130 0.870 17 C -0.237 4.237 18 C 0.285 3.715 19 O -0.462 6.462 20 N -0.345 5.345 21 C -0.064 4.064 22 C 0.140 3.860 23 C -0.580 4.580 24 H 0.069 0.931 25 C -0.193 4.193 26 N -0.569 5.569 27 Si 0.793 3.207 28 H -0.185 1.185 29 H -0.206 1.206 30 H -0.199 1.199 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.232 0.768 42 H 0.162 0.838 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.110 0.890 49 H 0.041 0.959 50 H 0.010 0.990 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.069 -6.345 -13.398 27.422 hybrid contribution 0.564 0.346 0.741 0.993 sum -22.505 -5.999 -12.657 26.508 Atomic orbital electron populations 1.21789 0.92065 1.02937 1.02309 1.20111 0.97158 0.98925 0.89947 0.91435 1.19987 0.97673 0.94905 0.96030 1.21178 1.00505 0.93743 0.98232 1.21433 0.97507 1.00803 0.94148 1.21427 0.98734 0.94575 1.00370 1.21365 1.00040 0.95729 0.97639 1.21265 0.98529 1.00243 0.95199 1.21779 0.86463 0.98283 0.94409 0.90232 1.22379 0.98354 0.82284 0.96625 1.86573 1.81725 1.20983 1.49159 1.59988 1.06353 1.44584 1.19522 1.21373 0.92156 0.91110 0.98298 0.86983 1.22622 1.03769 0.97560 0.99711 1.21401 0.88106 0.83778 0.78219 1.90626 1.71436 1.24363 1.59767 1.48143 1.18770 1.16546 1.51076 1.22072 0.99664 0.83084 1.01626 1.18685 0.79954 0.94566 0.92785 1.21704 0.92964 1.39767 1.03548 0.93065 1.25890 0.94691 0.96241 1.02488 1.70060 0.98560 1.48164 1.40146 0.85396 0.77656 0.78540 0.79096 1.18513 1.20641 1.19906 0.91545 0.92489 0.90922 0.84418 0.83944 0.84570 0.85389 0.86997 0.90467 0.95088 0.76766 0.83842 0.93777 0.89016 0.89068 0.90811 0.91674 0.88952 0.95915 0.99002 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.35 71.98 0.60 -1.31 16 2 C -0.04 -0.85 2.06 -11.54 -0.02 -0.88 16 3 H 0.07 1.77 7.37 -2.39 -0.02 1.75 16 4 C -0.09 -1.71 3.57 -19.87 -0.07 -1.78 16 5 C -0.12 -1.90 8.75 22.27 0.19 -1.71 16 6 C -0.12 -1.85 10.05 22.27 0.22 -1.62 16 7 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 8 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 9 C -0.13 -3.00 9.50 22.27 0.21 -2.79 16 10 C 0.10 2.13 1.68 44.91 0.08 2.20 16 11 H 0.08 1.29 6.27 -2.39 -0.01 1.27 16 12 C 0.08 1.73 6.23 71.98 0.45 2.17 16 13 O -0.58 -15.08 12.78 -148.98 -1.90 -16.99 16 14 N -0.67 -20.46 5.49 -473.32 -2.60 -23.05 16 15 C 0.08 2.52 1.99 44.17 0.09 2.61 16 16 H 0.11 2.91 6.36 -2.39 -0.02 2.89 16 17 C -0.18 -3.95 8.78 71.98 0.63 -3.31 16 18 C 0.50 22.14 7.15 87.66 0.63 22.77 16 19 O -0.58 -33.15 16.01 -3.03 -0.05 -33.20 16 20 N -0.61 -27.06 2.86 -851.14 -2.43 -29.49 16 21 C 0.08 2.33 8.80 127.77 1.12 3.45 16 22 C 0.26 14.77 5.16 85.63 0.44 15.22 16 23 C -0.54 -32.44 9.39 25.60 0.24 -32.20 16 24 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 25 C 0.01 0.33 5.46 84.66 0.46 0.80 16 26 N -0.93 -57.93 13.29 21.45 0.28 -57.64 16 27 Si 0.97 46.24 29.54 68.60 2.03 48.26 16 28 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 29 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 30 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 31 H 0.07 0.91 6.81 -2.39 -0.02 0.90 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.77 7.61 -2.39 -0.02 0.76 16 34 H 0.14 1.59 7.15 -2.91 -0.02 1.57 16 35 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.11 2.62 7.95 -2.91 -0.02 2.60 16 39 H 0.08 1.09 6.78 -2.38 -0.02 1.08 16 40 H 0.03 0.72 7.38 -2.39 -0.02 0.70 16 41 H 0.38 6.95 9.12 -74.06 -0.68 6.27 16 42 H 0.34 10.98 6.84 -89.69 -0.61 10.36 16 43 H 0.04 1.14 8.13 -2.39 -0.02 1.12 16 44 H 0.09 1.80 4.51 -2.38 -0.01 1.79 16 45 H 0.09 1.44 7.43 -2.39 -0.02 1.42 16 46 H 0.07 1.82 6.94 -2.38 -0.02 1.80 16 47 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 48 H 0.09 2.09 6.02 -2.39 -0.01 2.08 16 49 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 50 H -0.01 -0.54 7.42 -2.38 -0.02 -0.55 16 51 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -84.05 402.96 0.71 -83.34 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.35 Total: 29.54 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 5.72 Total: -0.77 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -4.74 Total: -110.19 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -1.95 Total: -50.18 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -84.05 0.71 -83.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613389338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.594 kcal (2) G-P(sol) polarization free energy of solvation -84.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds