Wall clock time and date at job start Tue Mar 31 2020 19:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.48657 * 2 1 4 4 C 1.53048 * 109.48901 * 120.04451 * 2 1 3 5 5 N 1.46960 * 109.36454 * 178.39329 * 4 2 1 6 6 C 1.46904 * 110.99867 * 176.81160 * 5 4 2 7 7 C 1.52998 * 109.46870 * 294.22287 * 6 5 4 8 8 H 1.08996 * 109.47527 * 57.21618 * 7 6 5 9 9 O 1.42901 * 109.47108 * 297.21063 * 7 6 5 10 10 C 1.53003 * 109.47042 * 177.21555 * 7 6 5 11 11 O 1.42901 * 109.47418 * 184.99967 * 10 7 6 12 12 C 1.35670 * 117.00286 * 180.02562 * 11 10 7 13 13 C 1.39313 * 119.81299 * 359.72348 * 12 11 10 14 14 C 1.36444 * 120.18314 * 180.28157 * 13 12 11 15 15 C 1.40836 * 119.80874 * 359.97438 * 14 13 12 16 16 C 1.41212 * 120.17687 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00440 * 208.83563 * 16 15 14 18 18 C 1.39892 * 120.00032 * 28.84067 * 16 15 14 19 19 N 1.30879 * 120.00060 * 9.40095 * 18 16 15 20 20 Si 1.86804 * 120.00017 * 189.40653 * 18 16 15 21 21 H 1.48500 * 109.47167 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47060 * 119.99761 * 20 18 16 23 23 H 1.48496 * 109.46861 * 239.99772 * 20 18 16 24 24 C 1.40828 * 119.64270 * 0.02562 * 15 14 13 25 25 C 1.36432 * 119.81498 * 359.97438 * 24 15 14 26 26 C 1.46952 * 110.87805 * 300.67696 * 5 4 2 27 27 C 1.53052 * 109.36709 * 59.32274 * 26 5 4 28 28 N 1.46952 * 109.51013 * 239.94773 * 2 1 3 29 29 C 1.46904 * 111.00035 * 56.82881 * 28 2 1 30 30 H 1.08998 * 109.47423 * 299.95834 * 1 2 3 31 31 H 1.09009 * 109.47193 * 59.95911 * 1 2 3 32 32 H 1.08996 * 109.47340 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.49123 * 58.42486 * 4 2 1 34 34 H 1.09006 * 109.50670 * 298.36907 * 4 2 1 35 35 H 1.08994 * 109.46788 * 174.22240 * 6 5 4 36 36 H 1.08997 * 109.46806 * 54.22046 * 6 5 4 37 37 H 0.96694 * 114.00377 * 300.00422 * 9 7 6 38 38 H 1.08999 * 109.46952 * 64.99648 * 10 7 6 39 39 H 1.09002 * 109.46898 * 304.99940 * 10 7 6 40 40 H 1.08001 * 119.91510 * 0.27827 * 13 12 11 41 41 H 1.07994 * 120.09719 * 180.02562 * 14 13 12 42 42 H 0.96998 * 120.00478 * 180.02562 * 19 18 16 43 43 H 1.08006 * 120.09679 * 180.02562 * 24 15 14 44 44 H 1.08000 * 119.91421 * 180.02562 * 25 24 15 45 45 H 1.09004 * 109.48811 * 179.28973 * 26 5 4 46 46 H 1.09001 * 109.49065 * 299.35752 * 26 5 4 47 47 H 1.09000 * 109.49343 * 181.63009 * 27 26 5 48 48 H 1.09005 * 109.50485 * 61.57474 * 27 26 5 49 49 H 1.09000 * 109.46516 * 60.00637 * 29 28 2 50 50 H 1.09000 * 109.47019 * 179.97438 * 29 28 2 51 51 H 1.08996 * 109.47469 * 300.00626 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7224 1.2489 5 7 3.5097 -0.7545 1.2269 6 6 4.0411 -1.3742 2.4482 7 6 3.7085 -0.4926 3.6536 8 1 2.6298 -0.3476 3.7112 9 8 4.3525 0.7749 3.5088 10 6 4.2009 -1.1715 4.9333 11 8 3.7885 -0.4062 6.0675 12 6 4.1472 -0.8738 7.2895 13 6 4.8796 -2.0545 7.3917 14 6 5.2393 -2.5347 8.6171 15 6 4.8686 -1.8329 9.7805 16 6 5.2372 -2.3226 11.0527 17 1 4.6206 -2.1087 11.9132 18 6 6.4012 -3.0847 11.1985 19 7 7.2430 -3.1907 10.2020 20 14 6.7540 -3.9511 12.8154 21 1 5.6552 -3.6744 13.7753 22 1 6.8511 -5.4144 12.5819 23 1 8.0363 -3.4528 13.3744 24 6 4.1282 -0.6402 9.6683 25 6 3.7764 -0.1736 8.4354 26 6 4.0004 -1.4482 0.0279 27 6 3.4898 -0.7259 -1.2211 28 7 2.0207 -0.6937 -1.1989 29 6 1.4893 -0.0740 -2.4203 30 1 -0.3634 0.5132 0.8903 31 1 -0.3634 0.5145 -0.8897 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6547 -1.7416 1.2628 34 1 1.7018 -0.1931 2.1396 35 1 5.1225 -1.4785 2.3616 36 1 3.5906 -2.3577 2.5821 37 1 5.3163 0.7221 3.4511 38 1 5.2888 -1.2363 4.9147 39 1 3.7782 -2.1741 4.9984 40 1 5.1634 -2.5913 6.4986 41 1 5.8075 -3.4498 8.6947 42 1 8.0500 -3.7195 10.3028 43 1 3.8403 -0.0959 10.5556 44 1 3.2090 0.7411 8.3475 45 1 5.0904 -1.4479 0.0281 46 1 3.6367 -2.4758 0.0279 47 1 3.8286 -1.2555 -2.1115 48 1 3.8757 0.2934 -1.2353 49 1 1.8050 0.9683 -2.4658 50 1 1.8685 -0.6065 -3.2925 51 1 0.4005 -0.1237 -2.4088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730081849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:11 Heat of formation + Delta-G solvation = -54.277587 kcal Electronic energy + Delta-G solvation = -28555.230172 eV Core-core repulsion = 24647.681791 eV Total energy + Delta-G solvation = -3907.548381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.98407 -38.94792 -37.55204 -36.17141 -35.25098 -33.29526 -32.76408 -30.97634 -29.65756 -29.27180 -28.32805 -27.25292 -25.53625 -24.57635 -23.80680 -22.19240 -21.57195 -20.82446 -20.35501 -19.93414 -17.35842 -17.10650 -16.60653 -16.41377 -16.02971 -15.84892 -15.35725 -15.19340 -15.03106 -14.78923 -14.30838 -14.04201 -13.95087 -13.85427 -13.45601 -13.17096 -12.73953 -12.60374 -12.47454 -12.41368 -12.18110 -12.12946 -11.97378 -11.75576 -11.69181 -11.45219 -11.34978 -11.23996 -11.15190 -10.97784 -10.82895 -10.66333 -10.58995 -9.92556 -9.88791 -9.73364 -9.34411 -9.07951 -8.71488 -8.50854 -7.66208 -6.94734 -6.66432 -4.27520 2.76059 2.96148 3.09222 3.14651 3.19741 3.37443 3.55105 3.97034 4.04771 4.48045 4.49440 4.65189 4.66248 4.67714 4.88630 4.98887 4.99172 5.05381 5.09441 5.16366 5.18020 5.22579 5.31291 5.35417 5.39543 5.46548 5.48632 5.54936 5.61225 5.64140 5.66816 5.71331 5.74644 5.94622 6.04906 6.09773 6.28342 6.59735 6.65516 6.70794 6.83444 6.84982 6.88327 7.08023 7.29931 7.40929 7.56639 7.78290 7.90436 8.01417 8.16376 8.44813 8.65964 8.92358 8.99244 10.28197 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.001856 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.824279 B =15079.709772 C =15519.344560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.083 3.917 3 H 0.051 0.949 4 C 0.059 3.941 5 N -0.529 5.529 6 C 0.027 3.973 7 C 0.117 3.883 8 H 0.103 0.897 9 O -0.540 6.540 10 C 0.038 3.962 11 O -0.318 6.318 12 C -0.002 4.002 13 C -0.179 4.179 14 C -0.126 4.126 15 C 0.083 3.917 16 C -0.462 4.462 17 H 0.076 0.924 18 C 0.071 3.929 19 N -0.811 5.811 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.275 1.275 24 C -0.189 4.189 25 C -0.117 4.117 26 C 0.056 3.944 27 C 0.058 3.942 28 N -0.542 5.542 29 C 0.022 3.978 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.371 0.629 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.125 0.875 42 H 0.277 0.723 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.042 0.958 47 H 0.078 0.922 48 H 0.043 0.957 49 H 0.025 0.975 50 H 0.066 0.934 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.643 2.049 -22.243 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 H 0.069 0.931 4 C -0.070 4.070 5 N -0.253 5.253 6 C -0.101 4.101 7 C 0.057 3.943 8 H 0.121 0.879 9 O -0.344 6.344 10 C -0.039 4.039 11 O -0.234 6.234 12 C -0.046 4.046 13 C -0.198 4.198 14 C -0.145 4.145 15 C 0.081 3.919 16 C -0.493 4.493 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.439 5.439 20 Si 0.736 3.264 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.201 1.201 24 C -0.209 4.209 25 C -0.136 4.136 26 C -0.072 4.072 27 C -0.070 4.070 28 N -0.268 5.268 29 C -0.126 4.126 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.217 0.783 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.143 0.857 42 H 0.088 0.912 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.097 0.903 48 H 0.061 0.939 49 H 0.044 0.956 50 H 0.085 0.915 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.135 2.325 -22.305 23.533 hybrid contribution 1.129 -0.979 0.624 1.620 sum -6.006 1.346 -21.681 22.538 Atomic orbital electron populations 1.21882 0.93950 1.02647 1.02087 1.21663 0.95182 0.96224 0.89433 0.93061 1.22280 0.87192 0.99652 0.97831 1.62020 1.08494 1.53392 1.01386 1.22714 1.00988 0.96195 0.90244 1.21861 0.98746 0.83992 0.89750 0.87893 1.86620 1.23681 1.28233 1.95853 1.23128 0.99268 0.95174 0.86355 1.85864 1.75150 1.50220 1.12132 1.18643 1.05339 0.97278 0.83313 1.20631 1.03904 0.97196 0.98086 1.21044 1.02003 1.00700 0.90792 1.17630 0.90677 0.89994 0.93605 1.19492 1.06658 1.28491 0.94658 0.90584 1.25857 0.95455 0.94889 0.98224 1.69798 1.09142 1.32902 1.32056 0.86223 0.78977 0.79285 0.81953 1.18554 1.19944 1.20094 1.20666 1.07469 0.97923 0.94851 1.19630 1.03690 0.99637 0.90647 1.22170 0.99771 0.95937 0.89308 1.22143 0.87309 0.99865 0.97690 1.62190 1.08402 1.53841 1.02337 1.22401 1.01014 0.97005 0.92156 0.91741 0.92249 0.91798 0.93982 0.89710 0.89968 0.93497 0.78294 0.92751 0.92522 0.88887 0.85731 0.91216 0.88141 0.88430 0.90202 0.94012 0.90327 0.93877 0.95629 0.91541 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.86 37.16 0.33 -0.80 16 2 C 0.08 0.77 2.56 -67.66 -0.17 0.60 16 3 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.06 0.59 4.69 -3.77 -0.02 0.58 16 5 N -0.53 -5.45 4.63 -234.47 -1.09 -6.53 16 6 C 0.03 0.28 4.61 -3.82 -0.02 0.26 16 7 C 0.12 1.50 3.17 -26.73 -0.08 1.42 16 8 H 0.10 1.40 6.36 -51.93 -0.33 1.07 16 9 O -0.54 -7.60 13.22 -40.08 -0.53 -8.13 16 10 C 0.04 0.59 4.36 37.16 0.16 0.76 16 11 O -0.32 -6.53 10.09 -23.56 -0.24 -6.77 16 12 C 0.00 -0.06 6.71 -38.78 -0.26 -0.32 16 13 C -0.18 -4.20 8.96 -39.83 -0.36 -4.56 16 14 C -0.13 -3.27 8.61 -39.25 -0.34 -3.61 16 15 C 0.08 2.23 5.56 -106.81 -0.59 1.64 16 16 C -0.46 -12.33 9.05 -37.83 -0.34 -12.68 16 17 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 18 C 0.07 1.79 5.28 -17.34 -0.09 1.70 16 19 N -0.81 -21.15 10.77 55.54 0.60 -20.56 16 20 Si 0.91 18.90 29.57 -169.99 -5.03 13.88 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 24 C -0.19 -4.71 9.74 -39.25 -0.38 -5.09 16 25 C -0.12 -2.76 9.92 -39.83 -0.40 -3.16 16 26 C 0.06 0.50 5.61 -3.77 -0.02 0.48 16 27 C 0.06 0.48 5.62 -3.77 -0.02 0.46 16 28 N -0.54 -4.77 4.78 -234.73 -1.12 -5.89 16 29 C 0.02 0.15 9.13 60.07 0.55 0.70 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.40 6.37 -51.92 -0.33 0.07 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.91 6.27 -51.93 -0.33 0.58 16 35 H 0.08 0.76 8.03 -51.93 -0.42 0.34 16 36 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.37 4.08 9.04 45.56 0.41 4.49 16 38 H 0.05 0.82 7.65 -51.93 -0.40 0.43 16 39 H 0.06 0.85 7.64 -51.93 -0.40 0.45 16 40 H 0.09 1.92 6.27 -52.49 -0.33 1.59 16 41 H 0.12 3.33 6.16 -52.49 -0.32 3.01 16 42 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 43 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 44 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 45 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 46 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 48 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 50 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 51 H 0.07 0.46 6.25 -51.93 -0.32 0.13 16 LS Contribution 398.59 15.07 6.01 6.01 Total: -1.00 -29.98 398.59 -11.25 -41.23 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.80 Total: 8.39 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -2.06 Total: -21.63 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: -1.61 Total: -32.98 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.77 Total: -14.90 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.98 -11.25 -41.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730081849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.043 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds