Wall clock time and date at job start Tue Mar 31 2020 19:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.48657 * 2 1 4 4 C 1.53048 * 109.48901 * 120.04451 * 2 1 3 5 5 N 1.46960 * 109.36454 * 178.39329 * 4 2 1 6 6 C 1.46904 * 110.99867 * 176.81160 * 5 4 2 7 7 C 1.52998 * 109.46870 * 294.22287 * 6 5 4 8 8 H 1.08996 * 109.47527 * 57.21618 * 7 6 5 9 9 O 1.42901 * 109.47108 * 297.21063 * 7 6 5 10 10 C 1.53003 * 109.47042 * 177.21555 * 7 6 5 11 11 O 1.42901 * 109.47418 * 184.99967 * 10 7 6 12 12 C 1.35670 * 117.00286 * 180.02562 * 11 10 7 13 13 C 1.39313 * 119.81299 * 359.72348 * 12 11 10 14 14 C 1.36444 * 120.18314 * 180.28157 * 13 12 11 15 15 C 1.40836 * 119.80874 * 359.97438 * 14 13 12 16 16 C 1.41212 * 120.17687 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00440 * 208.83563 * 16 15 14 18 18 C 1.39892 * 120.00032 * 28.84067 * 16 15 14 19 19 N 1.30879 * 120.00060 * 9.40095 * 18 16 15 20 20 Si 1.86804 * 120.00017 * 189.40653 * 18 16 15 21 21 H 1.48500 * 109.47167 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47060 * 119.99761 * 20 18 16 23 23 H 1.48496 * 109.46861 * 239.99772 * 20 18 16 24 24 C 1.40828 * 119.64270 * 0.02562 * 15 14 13 25 25 C 1.36432 * 119.81498 * 359.97438 * 24 15 14 26 26 C 1.46952 * 110.87805 * 300.67696 * 5 4 2 27 27 C 1.53052 * 109.36709 * 59.32274 * 26 5 4 28 28 N 1.46952 * 109.51013 * 239.94773 * 2 1 3 29 29 C 1.46904 * 111.00035 * 56.82881 * 28 2 1 30 30 H 1.08998 * 109.47423 * 299.95834 * 1 2 3 31 31 H 1.09009 * 109.47193 * 59.95911 * 1 2 3 32 32 H 1.08996 * 109.47340 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.49123 * 58.42486 * 4 2 1 34 34 H 1.09006 * 109.50670 * 298.36907 * 4 2 1 35 35 H 1.08994 * 109.46788 * 174.22240 * 6 5 4 36 36 H 1.08997 * 109.46806 * 54.22046 * 6 5 4 37 37 H 0.96694 * 114.00377 * 300.00422 * 9 7 6 38 38 H 1.08999 * 109.46952 * 64.99648 * 10 7 6 39 39 H 1.09002 * 109.46898 * 304.99940 * 10 7 6 40 40 H 1.08001 * 119.91510 * 0.27827 * 13 12 11 41 41 H 1.07994 * 120.09719 * 180.02562 * 14 13 12 42 42 H 0.96998 * 120.00478 * 180.02562 * 19 18 16 43 43 H 1.08006 * 120.09679 * 180.02562 * 24 15 14 44 44 H 1.08000 * 119.91421 * 180.02562 * 25 24 15 45 45 H 1.09004 * 109.48811 * 179.28973 * 26 5 4 46 46 H 1.09001 * 109.49065 * 299.35752 * 26 5 4 47 47 H 1.09000 * 109.49343 * 181.63009 * 27 26 5 48 48 H 1.09005 * 109.50485 * 61.57474 * 27 26 5 49 49 H 1.09000 * 109.46516 * 60.00637 * 29 28 2 50 50 H 1.09000 * 109.47019 * 179.97438 * 29 28 2 51 51 H 1.08996 * 109.47469 * 300.00626 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7224 1.2489 5 7 3.5097 -0.7545 1.2269 6 6 4.0411 -1.3742 2.4482 7 6 3.7085 -0.4926 3.6536 8 1 2.6298 -0.3476 3.7112 9 8 4.3525 0.7749 3.5088 10 6 4.2009 -1.1715 4.9333 11 8 3.7885 -0.4062 6.0675 12 6 4.1472 -0.8738 7.2895 13 6 4.8796 -2.0545 7.3917 14 6 5.2393 -2.5347 8.6171 15 6 4.8686 -1.8329 9.7805 16 6 5.2372 -2.3226 11.0527 17 1 4.6206 -2.1087 11.9132 18 6 6.4012 -3.0847 11.1985 19 7 7.2430 -3.1907 10.2020 20 14 6.7540 -3.9511 12.8154 21 1 5.6552 -3.6744 13.7753 22 1 6.8511 -5.4144 12.5819 23 1 8.0363 -3.4528 13.3744 24 6 4.1282 -0.6402 9.6683 25 6 3.7764 -0.1736 8.4354 26 6 4.0004 -1.4482 0.0279 27 6 3.4898 -0.7259 -1.2211 28 7 2.0207 -0.6937 -1.1989 29 6 1.4893 -0.0740 -2.4203 30 1 -0.3634 0.5132 0.8903 31 1 -0.3634 0.5145 -0.8897 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6547 -1.7416 1.2628 34 1 1.7018 -0.1931 2.1396 35 1 5.1225 -1.4785 2.3616 36 1 3.5906 -2.3577 2.5821 37 1 5.3163 0.7221 3.4511 38 1 5.2888 -1.2363 4.9147 39 1 3.7782 -2.1741 4.9984 40 1 5.1634 -2.5913 6.4986 41 1 5.8075 -3.4498 8.6947 42 1 8.0500 -3.7195 10.3028 43 1 3.8403 -0.0959 10.5556 44 1 3.2090 0.7411 8.3475 45 1 5.0904 -1.4479 0.0281 46 1 3.6367 -2.4758 0.0279 47 1 3.8286 -1.2555 -2.1115 48 1 3.8757 0.2934 -1.2353 49 1 1.8050 0.9683 -2.4658 50 1 1.8685 -0.6065 -3.2925 51 1 0.4005 -0.1237 -2.4088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730081849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:10 Heat of formation + Delta-G solvation = -75.107993 kcal Electronic energy + Delta-G solvation = -28556.133447 eV Core-core repulsion = 24647.681791 eV Total energy + Delta-G solvation = -3908.451656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.87982 -40.42471 -38.82445 -37.70087 -36.13969 -35.16811 -33.44156 -32.07901 -31.52759 -30.92493 -29.34600 -27.96974 -26.89974 -25.98041 -24.67389 -23.28176 -22.80868 -22.26303 -21.96674 -20.65607 -19.26700 -18.67183 -17.84027 -17.48147 -16.97243 -16.81579 -16.62875 -16.21108 -16.05780 -15.77980 -15.65266 -15.44576 -15.10546 -14.98113 -14.75017 -14.23727 -14.14927 -13.90648 -13.75706 -13.40281 -13.35761 -13.21063 -13.10394 -12.86182 -12.79167 -12.73716 -12.66554 -12.46579 -12.32178 -12.10470 -12.05583 -11.68808 -11.60461 -11.57402 -11.49568 -11.19623 -10.98329 -10.88768 -9.57636 -9.41944 -9.26210 -8.84969 -8.54672 -6.25700 0.92305 1.04101 1.40056 1.50294 1.54641 2.23951 2.30629 2.75844 2.90744 2.95838 3.51377 3.68793 3.76261 3.78250 3.93172 3.99556 4.04695 4.15716 4.23243 4.28240 4.32674 4.34505 4.39111 4.43254 4.47174 4.57603 4.61639 4.64596 4.67673 4.77670 4.79743 4.88067 4.91258 4.97371 4.98555 5.01314 5.04037 5.11028 5.15613 5.31273 5.38411 5.51778 5.66301 5.88824 5.94616 5.96669 6.07603 6.13197 6.15047 6.23758 6.56694 6.78509 6.86534 6.96915 7.09247 8.41968 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.001856 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.824279 B =15079.709772 C =15519.344560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.035 0.965 4 C 0.060 3.940 5 N -0.538 5.538 6 C 0.036 3.964 7 C 0.128 3.872 8 H 0.094 0.906 9 O -0.558 6.558 10 C 0.031 3.969 11 O -0.328 6.328 12 C 0.007 3.993 13 C -0.180 4.180 14 C -0.146 4.146 15 C 0.049 3.951 16 C -0.497 4.497 17 H 0.074 0.926 18 C 0.029 3.971 19 N -0.842 5.842 20 Si 0.985 3.015 21 H -0.259 1.259 22 H -0.265 1.265 23 H -0.268 1.268 24 C -0.197 4.197 25 C -0.128 4.128 26 C 0.057 3.943 27 C 0.059 3.941 28 N -0.550 5.550 29 C 0.022 3.978 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.383 0.617 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.285 0.715 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.092 0.908 46 H 0.039 0.961 47 H 0.095 0.905 48 H 0.033 0.967 49 H 0.023 0.977 50 H 0.077 0.923 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.574 1.598 -23.510 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 H 0.053 0.947 4 C -0.069 4.069 5 N -0.263 5.263 6 C -0.093 4.093 7 C 0.068 3.932 8 H 0.112 0.888 9 O -0.364 6.364 10 C -0.045 4.045 11 O -0.244 6.244 12 C -0.037 4.037 13 C -0.198 4.198 14 C -0.165 4.165 15 C 0.047 3.953 16 C -0.528 4.528 17 H 0.092 0.908 18 C -0.183 4.183 19 N -0.470 5.470 20 Si 0.806 3.194 21 H -0.183 1.183 22 H -0.190 1.190 23 H -0.193 1.193 24 C -0.217 4.217 25 C -0.147 4.147 26 C -0.071 4.071 27 C -0.069 4.069 28 N -0.276 5.276 29 C -0.125 4.125 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.232 0.768 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.095 0.905 43 H 0.128 0.872 44 H 0.136 0.864 45 H 0.110 0.890 46 H 0.058 0.942 47 H 0.113 0.887 48 H 0.052 0.948 49 H 0.041 0.959 50 H 0.096 0.904 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.069 1.884 -23.606 24.714 hybrid contribution 1.070 -0.756 0.840 1.556 sum -5.998 1.128 -22.766 23.570 Atomic orbital electron populations 1.21846 0.92830 1.02718 1.02686 1.21617 0.96086 0.95132 0.89486 0.94716 1.22250 0.87319 0.99357 0.97932 1.62016 1.08527 1.53892 1.01854 1.22598 1.01934 0.95568 0.89161 1.21761 0.98080 0.83923 0.89465 0.88796 1.86589 1.24983 1.28983 1.95834 1.23475 0.99978 0.95550 0.85535 1.85864 1.75147 1.51178 1.12212 1.18754 1.03870 0.96577 0.84487 1.20837 1.03379 0.97447 0.98185 1.21014 1.03039 1.00704 0.91763 1.17995 0.91942 0.91114 0.94271 1.19729 1.07837 1.30481 0.94757 0.90767 1.26710 0.94683 0.94986 1.01953 1.69857 1.09656 1.33433 1.34046 0.85110 0.78833 0.78171 0.77262 1.18285 1.19012 1.19327 1.20853 1.07268 0.97614 0.95965 1.19910 1.03776 1.00452 0.90524 1.22225 1.00485 0.95608 0.88766 1.22175 0.87115 0.99475 0.98155 1.62233 1.08718 1.53944 1.02706 1.22449 1.01433 0.96911 0.91734 0.91637 0.91213 0.91903 0.94303 0.90733 0.88494 0.92935 0.76829 0.91919 0.91607 0.86261 0.87141 0.90480 0.87183 0.86418 0.88985 0.94244 0.88679 0.94827 0.95851 0.90417 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.86 71.98 0.64 -1.39 16 2 C 0.09 1.51 2.56 44.92 0.12 1.63 16 3 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 4 C 0.06 1.16 4.69 86.31 0.40 1.57 16 5 N -0.54 -10.33 4.63 -895.72 -4.15 -14.47 16 6 C 0.04 0.66 4.61 86.30 0.40 1.06 16 7 C 0.13 3.11 3.17 30.59 0.10 3.20 16 8 H 0.09 2.47 6.36 -2.39 -0.02 2.46 16 9 O -0.56 -14.96 13.22 -144.35 -1.91 -16.87 16 10 C 0.03 0.91 4.36 71.98 0.31 1.23 16 11 O -0.33 -13.06 10.09 -85.24 -0.86 -13.92 16 12 C 0.01 0.32 6.71 22.79 0.15 0.48 16 13 C -0.18 -8.35 8.96 22.11 0.20 -8.15 16 14 C -0.15 -7.71 8.61 22.49 0.19 -7.52 16 15 C 0.05 2.68 5.56 -21.28 -0.12 2.56 16 16 C -0.50 -27.18 9.05 23.40 0.21 -26.97 16 17 H 0.07 3.91 7.86 -2.91 -0.02 3.89 16 18 C 0.03 1.46 5.28 85.24 0.45 1.91 16 19 N -0.84 -44.49 10.77 21.82 0.23 -44.26 16 20 Si 0.99 38.83 29.57 68.60 2.03 40.85 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 24 C -0.20 -9.93 9.74 22.48 0.22 -9.71 16 25 C -0.13 -5.98 9.92 22.11 0.22 -5.76 16 26 C 0.06 0.90 5.61 86.31 0.48 1.38 16 27 C 0.06 0.88 5.62 86.31 0.49 1.37 16 28 N -0.55 -8.88 4.78 -896.55 -4.29 -13.17 16 29 C 0.02 0.27 9.13 127.69 1.17 1.44 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.83 6.37 -2.38 -0.02 0.82 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.07 1.58 6.27 -2.38 -0.01 1.56 16 35 H 0.10 1.53 8.03 -2.39 -0.02 1.52 16 36 H 0.05 0.94 8.12 -2.39 -0.02 0.92 16 37 H 0.38 7.82 9.04 -74.06 -0.67 7.15 16 38 H 0.06 1.76 7.65 -2.39 -0.02 1.74 16 39 H 0.07 1.84 7.64 -2.39 -0.02 1.82 16 40 H 0.12 4.77 6.27 -2.91 -0.02 4.75 16 41 H 0.11 6.08 6.16 -2.91 -0.02 6.07 16 42 H 0.28 13.60 8.30 -92.71 -0.77 12.83 16 43 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 44 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 45 H 0.09 1.22 8.07 -2.38 -0.02 1.20 16 46 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.09 1.10 8.13 -2.39 -0.02 1.08 16 48 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 49 H 0.02 0.29 8.14 -2.39 -0.02 0.28 16 50 H 0.08 0.77 8.13 -2.39 -0.02 0.75 16 51 H 0.08 0.85 6.25 -2.39 -0.01 0.84 16 Total: -1.00 -64.41 398.59 -3.06 -67.47 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.25 Total: 36.04 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 5.63 Total: -41.68 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -8.20 Total: -71.90 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -2.77 Total: -30.79 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.85 kcal Total: -64.41 -3.06 -67.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730081849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.635 kcal (2) G-P(sol) polarization free energy of solvation -64.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds