Wall clock time and date at job start Tue Mar 31 2020 19:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47342 * 2 1 4 4 N 1.46899 * 109.46983 * 240.00326 * 2 1 3 5 5 C 1.46907 * 111.00230 * 84.99596 * 4 2 1 6 6 C 1.53002 * 109.47065 * 180.02562 * 5 4 2 7 7 N 1.46899 * 109.46856 * 180.02562 * 6 5 4 8 8 C 1.47019 * 110.99820 * 66.36432 * 7 6 5 9 9 C 1.53101 * 109.25693 * 182.39290 * 8 7 6 10 10 O 1.43020 * 109.25827 * 303.15247 * 9 8 7 11 11 C 1.43107 * 113.76134 * 58.67092 * 10 9 8 12 12 H 1.09001 * 109.50235 * 61.25513 * 11 10 9 13 13 C 1.53007 * 109.56531 * 181.41896 * 11 10 9 14 14 C 1.47011 * 111.00134 * 189.99820 * 7 6 5 15 15 C 1.50698 * 109.47495 * 120.00183 * 2 1 3 16 16 C 1.38303 * 119.93155 * 79.72857 * 15 2 1 17 17 C 1.38103 * 120.07224 * 179.72927 * 16 15 2 18 18 C 1.38876 * 119.92550 * 0.53905 * 17 16 15 19 19 O 1.35746 * 120.06793 * 179.75002 * 18 17 16 20 20 C 1.34835 * 117.00232 * 174.44331 * 19 18 17 21 21 H 1.08008 * 119.99529 * 5.05953 * 20 19 18 22 22 C 1.38649 * 120.00368 * 185.05711 * 20 19 18 23 23 N 1.31562 * 119.99672 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00025 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47358 * 60.00109 * 24 22 20 26 26 H 1.48501 * 109.47012 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47123 * 299.99948 * 24 22 20 28 28 C 1.38885 * 119.86553 * 359.73378 * 18 17 16 29 29 C 1.38099 * 119.92795 * 359.97438 * 28 18 17 30 30 H 1.09002 * 109.46994 * 299.99567 * 1 2 3 31 31 H 1.08996 * 109.47313 * 59.99918 * 1 2 3 32 32 H 1.09010 * 109.46880 * 179.97438 * 1 2 3 33 33 H 1.00906 * 111.00012 * 321.04388 * 4 2 1 34 34 H 1.08999 * 109.46580 * 59.99895 * 5 4 2 35 35 H 1.08997 * 109.46692 * 300.00052 * 5 4 2 36 36 H 1.08998 * 109.47107 * 60.00121 * 6 5 4 37 37 H 1.08998 * 109.46926 * 299.99861 * 6 5 4 38 38 H 1.08996 * 109.50776 * 302.32264 * 8 7 6 39 39 H 1.08999 * 109.50448 * 62.41682 * 8 7 6 40 40 H 1.09000 * 109.50542 * 63.08280 * 9 8 7 41 41 H 1.09003 * 109.50546 * 183.22038 * 9 8 7 42 42 H 1.08996 * 109.46876 * 179.75870 * 13 11 10 43 43 H 1.09004 * 109.46657 * 299.75395 * 13 11 10 44 44 H 1.09001 * 109.46942 * 59.75643 * 13 11 10 45 45 H 1.08996 * 109.50791 * 297.54804 * 14 7 6 46 46 H 1.08997 * 109.50566 * 57.63071 * 14 7 6 47 47 H 1.08005 * 119.96334 * 359.97438 * 16 15 2 48 48 H 1.07995 * 120.03655 * 180.27145 * 17 16 15 49 49 H 0.97000 * 119.99694 * 179.97438 * 23 22 20 50 50 H 1.07996 * 120.03405 * 179.97438 * 28 18 17 51 51 H 1.07996 * 119.96508 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0823 0.2227 -2.3470 6 6 2.5949 -0.5331 -3.5746 7 7 2.6582 0.3822 -4.7219 8 6 3.6749 1.4228 -4.5102 9 6 3.6659 2.3869 -5.6995 10 8 3.8875 1.6506 -6.9054 11 6 2.9148 0.6284 -7.1439 12 1 1.9276 1.0805 -7.2390 13 6 3.2621 -0.1185 -8.4333 14 6 2.9167 -0.3528 -5.9686 15 6 2.0324 -0.7104 1.2304 16 6 2.0610 -2.0927 1.2658 17 6 2.5261 -2.7467 2.3898 18 6 2.9549 -2.0149 3.4894 19 8 3.4078 -2.6548 4.5976 20 6 3.9157 -1.8874 5.5831 21 1 3.8741 -0.8109 5.5050 22 6 4.4913 -2.4800 6.6965 23 7 4.5415 -3.7912 6.7917 24 14 5.1942 -1.4167 8.0621 25 1 4.1196 -0.5612 8.6263 26 1 5.7469 -2.2861 9.1316 27 1 6.2745 -0.5576 7.5142 28 6 2.9197 -0.6270 3.4529 29 6 2.4591 0.0211 2.3238 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.4495 -1.4979 -1.4101 34 1 2.7587 1.0463 -2.1182 35 1 1.0869 0.6163 -2.5525 36 1 1.9182 -1.3564 -3.8031 37 1 3.5902 -0.9271 -3.3693 38 1 3.4497 1.9711 -3.5955 39 1 4.6577 0.9592 -4.4241 40 1 2.7005 2.8902 -5.7526 41 1 4.4565 3.1267 -5.5742 42 1 2.5227 -0.8994 -8.6112 43 1 3.2606 0.5806 -9.2697 44 1 4.2502 -0.5686 -8.3376 45 1 3.8873 -0.8447 -5.9065 46 1 2.1384 -1.1011 -6.1180 47 1 1.7229 -2.6613 0.4120 48 1 2.5523 -3.8260 2.4151 49 1 4.9445 -4.2058 7.5706 50 1 3.2521 -0.0552 4.3067 51 1 2.4319 1.1004 2.2946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776154792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:23 Heat of formation + Delta-G solvation = -43.135154 kcal Electronic energy + Delta-G solvation = -28025.303446 eV Core-core repulsion = 24118.238237 eV Total energy + Delta-G solvation = -3907.065209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.07467 -39.16938 -37.74952 -36.53094 -35.22374 -33.22178 -32.32185 -31.47867 -30.14672 -29.15254 -27.99711 -27.53579 -25.38137 -24.90668 -23.68457 -22.55993 -21.96281 -21.27369 -20.71435 -19.98978 -17.89936 -16.99201 -16.79267 -16.66000 -16.07770 -15.80036 -15.35375 -15.01192 -14.94394 -14.60397 -14.49504 -14.18319 -13.82411 -13.63468 -13.52356 -13.21728 -13.04246 -12.88113 -12.76473 -12.68075 -12.48946 -12.29447 -12.22229 -12.06652 -11.83043 -11.64860 -11.55105 -11.34673 -11.15672 -11.08928 -10.83332 -10.64435 -10.61233 -10.41680 -10.39746 -9.94780 -9.29408 -8.79297 -8.76251 -8.37517 -8.11150 -7.10793 -6.41706 -4.00564 2.27731 2.37223 3.14477 3.15609 3.18393 3.26392 3.41138 3.99227 4.27724 4.39116 4.54576 4.59670 4.63621 4.73777 4.80645 4.91393 4.98202 5.08717 5.10224 5.12841 5.15015 5.21624 5.26885 5.32313 5.36074 5.38009 5.42823 5.46473 5.50696 5.61287 5.68062 5.69491 5.72224 5.75809 5.80059 5.90755 5.99625 6.16468 6.26922 6.45416 6.56220 6.59612 6.75658 6.82087 6.89227 7.03879 7.11252 7.33666 7.38963 7.46499 7.49621 7.88100 8.03439 9.04004 9.75291 10.76441 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022097 B = 0.001743 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.817243 B =16058.345751 C =16269.438880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.144 3.856 3 H 0.074 0.926 4 N -0.680 5.680 5 C 0.064 3.936 6 C 0.057 3.943 7 N -0.538 5.538 8 C 0.014 3.986 9 C 0.065 3.935 10 O -0.385 6.385 11 C 0.089 3.911 12 H 0.066 0.934 13 C -0.145 4.145 14 C 0.025 3.975 15 C -0.167 4.167 16 C -0.053 4.053 17 C -0.194 4.194 18 C 0.153 3.847 19 O -0.180 6.180 20 C -0.391 4.391 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.864 5.864 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.233 4.233 29 C -0.068 4.068 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.338 0.662 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.085 0.915 47 H 0.108 0.892 48 H 0.115 0.885 49 H 0.270 0.730 50 H 0.125 0.875 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.553 9.813 -25.274 27.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.034 3.966 3 H 0.093 0.907 4 N -0.311 5.311 5 C -0.066 4.066 6 C -0.071 4.071 7 N -0.263 5.263 8 C -0.114 4.114 9 C -0.012 4.012 10 O -0.304 6.304 11 C 0.031 3.969 12 H 0.084 0.916 13 C -0.203 4.203 14 C -0.104 4.104 15 C -0.168 4.168 16 C -0.072 4.072 17 C -0.214 4.214 18 C 0.099 3.901 19 O -0.084 6.084 20 C -0.468 4.468 21 H 0.108 0.892 22 C -0.165 4.165 23 N -0.499 5.499 24 Si 0.765 3.235 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.252 4.252 29 C -0.087 4.087 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.126 0.874 48 H 0.133 0.867 49 H 0.080 0.920 50 H 0.143 0.857 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.088 9.740 -25.041 27.346 hybrid contribution 0.008 0.201 0.902 0.924 sum -5.080 9.940 -24.139 26.596 Atomic orbital electron populations 1.22492 0.97199 1.02168 1.01592 1.20156 0.91837 0.96618 0.87947 0.90743 1.60550 1.57933 1.09465 1.03145 1.21894 0.99754 0.95521 0.89430 1.22067 1.01005 0.94575 0.89478 1.62155 1.47392 1.14200 1.02552 1.22864 0.94073 0.94695 0.99806 1.22654 1.01973 0.93287 0.83266 1.88001 1.51721 1.49052 1.41590 1.22173 0.92439 0.88196 0.94074 0.91579 1.21754 1.02589 1.00096 0.95833 1.22806 1.01070 0.96517 0.89990 1.19064 1.09172 0.93547 0.95044 1.20303 0.97625 0.93388 0.95867 1.20206 1.08853 0.99309 0.92996 1.19389 0.92146 0.90925 0.87601 1.83977 1.67493 1.35020 1.21871 1.21263 1.38016 0.90649 0.96844 0.89203 1.25272 0.96798 0.96303 0.98160 1.70033 1.41759 1.08701 1.29433 0.85797 0.79268 0.78922 0.79526 1.19560 1.20306 1.19544 1.21104 1.09706 0.94414 1.00021 1.20536 0.97303 0.98057 0.92813 0.91839 0.93342 0.92363 0.84324 0.91184 0.94582 0.90769 0.93491 0.89220 0.93676 0.92334 0.88382 0.90864 0.91536 0.91811 0.93791 0.89687 0.87409 0.86739 0.92044 0.85702 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 9.14 37.16 0.34 -1.64 16 2 C 0.14 1.85 2.79 -68.87 -0.19 1.66 16 3 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 4 N -0.68 -7.91 5.71 -107.95 -0.62 -8.53 16 5 C 0.06 0.63 5.42 -3.82 -0.02 0.60 16 6 C 0.06 0.52 5.22 -3.82 -0.02 0.50 16 7 N -0.54 -4.72 4.73 -234.31 -1.11 -5.82 16 8 C 0.01 0.12 5.44 -3.71 -0.02 0.10 16 9 C 0.07 0.51 7.01 37.21 0.26 0.77 16 10 O -0.38 -3.66 10.47 -35.23 -0.37 -4.03 16 11 C 0.09 0.69 3.43 -26.68 -0.09 0.60 16 12 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 13 C -0.15 -0.86 9.57 37.16 0.36 -0.50 16 14 C 0.02 0.19 4.93 -3.71 -0.02 0.18 16 15 C -0.17 -2.80 4.96 -104.58 -0.52 -3.32 16 16 C -0.05 -0.95 9.31 -39.61 -0.37 -1.32 16 17 C -0.19 -4.15 9.99 -39.39 -0.39 -4.55 16 18 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 19 O -0.18 -5.21 9.76 0.05 0.00 -5.21 16 20 C -0.39 -11.06 9.49 30.88 0.29 -10.76 16 21 H 0.09 2.35 5.20 -52.48 -0.27 2.07 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16 24 Si 0.94 20.70 29.55 -169.99 -5.02 15.67 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 C -0.23 -5.11 9.17 -39.39 -0.36 -5.47 16 29 C -0.07 -1.25 9.66 -39.61 -0.38 -1.64 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.48 7.45 -51.93 -0.39 0.09 16 32 H 0.06 0.66 8.13 -51.92 -0.42 0.24 16 33 H 0.34 3.60 7.82 -39.29 -0.31 3.30 16 34 H 0.07 0.72 6.43 -51.93 -0.33 0.39 16 35 H 0.04 0.35 7.44 -51.93 -0.39 -0.03 16 36 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 37 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.09 0.71 6.38 -51.93 -0.33 0.38 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 47 H 0.11 1.62 7.25 -52.48 -0.38 1.24 16 48 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 49 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 50 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 51 H 0.10 1.62 8.03 -52.49 -0.42 1.19 16 LS Contribution 404.18 15.07 6.09 6.09 Total: -1.00 -31.30 404.18 -10.32 -41.62 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.56 Total: 5.34 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.49 Total: -20.33 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.97 Total: -39.16 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.37 Total: -9.23 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.30 -10.32 -41.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776154792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.519 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds