Wall clock time and date at job start Tue Mar 31 2020 19:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47342 * 2 1 4 4 N 1.46899 * 109.46983 * 240.00326 * 2 1 3 5 5 C 1.46907 * 111.00230 * 84.99596 * 4 2 1 6 6 C 1.53002 * 109.47065 * 180.02562 * 5 4 2 7 7 N 1.46899 * 109.46856 * 180.02562 * 6 5 4 8 8 C 1.47019 * 110.99820 * 66.36432 * 7 6 5 9 9 C 1.53101 * 109.25693 * 182.39290 * 8 7 6 10 10 O 1.43020 * 109.25827 * 303.15247 * 9 8 7 11 11 C 1.43107 * 113.76134 * 58.67092 * 10 9 8 12 12 H 1.09001 * 109.50235 * 61.25513 * 11 10 9 13 13 C 1.53007 * 109.56531 * 181.41896 * 11 10 9 14 14 C 1.47011 * 111.00134 * 189.99820 * 7 6 5 15 15 C 1.50698 * 109.47495 * 120.00183 * 2 1 3 16 16 C 1.38303 * 119.93155 * 79.72857 * 15 2 1 17 17 C 1.38103 * 120.07224 * 179.72927 * 16 15 2 18 18 C 1.38876 * 119.92550 * 0.53905 * 17 16 15 19 19 O 1.35746 * 120.06793 * 179.75002 * 18 17 16 20 20 C 1.34835 * 117.00232 * 174.44331 * 19 18 17 21 21 H 1.08008 * 119.99529 * 5.05953 * 20 19 18 22 22 C 1.38649 * 120.00368 * 185.05711 * 20 19 18 23 23 N 1.31562 * 119.99672 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00025 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47358 * 60.00109 * 24 22 20 26 26 H 1.48501 * 109.47012 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47123 * 299.99948 * 24 22 20 28 28 C 1.38885 * 119.86553 * 359.73378 * 18 17 16 29 29 C 1.38099 * 119.92795 * 359.97438 * 28 18 17 30 30 H 1.09002 * 109.46994 * 299.99567 * 1 2 3 31 31 H 1.08996 * 109.47313 * 59.99918 * 1 2 3 32 32 H 1.09010 * 109.46880 * 179.97438 * 1 2 3 33 33 H 1.00906 * 111.00012 * 321.04388 * 4 2 1 34 34 H 1.08999 * 109.46580 * 59.99895 * 5 4 2 35 35 H 1.08997 * 109.46692 * 300.00052 * 5 4 2 36 36 H 1.08998 * 109.47107 * 60.00121 * 6 5 4 37 37 H 1.08998 * 109.46926 * 299.99861 * 6 5 4 38 38 H 1.08996 * 109.50776 * 302.32264 * 8 7 6 39 39 H 1.08999 * 109.50448 * 62.41682 * 8 7 6 40 40 H 1.09000 * 109.50542 * 63.08280 * 9 8 7 41 41 H 1.09003 * 109.50546 * 183.22038 * 9 8 7 42 42 H 1.08996 * 109.46876 * 179.75870 * 13 11 10 43 43 H 1.09004 * 109.46657 * 299.75395 * 13 11 10 44 44 H 1.09001 * 109.46942 * 59.75643 * 13 11 10 45 45 H 1.08996 * 109.50791 * 297.54804 * 14 7 6 46 46 H 1.08997 * 109.50566 * 57.63071 * 14 7 6 47 47 H 1.08005 * 119.96334 * 359.97438 * 16 15 2 48 48 H 1.07995 * 120.03655 * 180.27145 * 17 16 15 49 49 H 0.97000 * 119.99694 * 179.97438 * 23 22 20 50 50 H 1.07996 * 120.03405 * 179.97438 * 28 18 17 51 51 H 1.07996 * 119.96508 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0823 0.2227 -2.3470 6 6 2.5949 -0.5331 -3.5746 7 7 2.6582 0.3822 -4.7219 8 6 3.6749 1.4228 -4.5102 9 6 3.6659 2.3869 -5.6995 10 8 3.8875 1.6506 -6.9054 11 6 2.9148 0.6284 -7.1439 12 1 1.9276 1.0805 -7.2390 13 6 3.2621 -0.1185 -8.4333 14 6 2.9167 -0.3528 -5.9686 15 6 2.0324 -0.7104 1.2304 16 6 2.0610 -2.0927 1.2658 17 6 2.5261 -2.7467 2.3898 18 6 2.9549 -2.0149 3.4894 19 8 3.4078 -2.6548 4.5976 20 6 3.9157 -1.8874 5.5831 21 1 3.8741 -0.8109 5.5050 22 6 4.4913 -2.4800 6.6965 23 7 4.5415 -3.7912 6.7917 24 14 5.1942 -1.4167 8.0621 25 1 4.1196 -0.5612 8.6263 26 1 5.7469 -2.2861 9.1316 27 1 6.2745 -0.5576 7.5142 28 6 2.9197 -0.6270 3.4529 29 6 2.4591 0.0211 2.3238 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.4495 -1.4979 -1.4101 34 1 2.7587 1.0463 -2.1182 35 1 1.0869 0.6163 -2.5525 36 1 1.9182 -1.3564 -3.8031 37 1 3.5902 -0.9271 -3.3693 38 1 3.4497 1.9711 -3.5955 39 1 4.6577 0.9592 -4.4241 40 1 2.7005 2.8902 -5.7526 41 1 4.4565 3.1267 -5.5742 42 1 2.5227 -0.8994 -8.6112 43 1 3.2606 0.5806 -9.2697 44 1 4.2502 -0.5686 -8.3376 45 1 3.8873 -0.8447 -5.9065 46 1 2.1384 -1.1011 -6.1180 47 1 1.7229 -2.6613 0.4120 48 1 2.5523 -3.8260 2.4151 49 1 4.9445 -4.2058 7.5706 50 1 3.2521 -0.0552 4.3067 51 1 2.4319 1.1004 2.2946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776154792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:22 Heat of formation + Delta-G solvation = -64.621457 kcal Electronic energy + Delta-G solvation = -28026.235162 eV Core-core repulsion = 24118.238237 eV Total energy + Delta-G solvation = -3907.996925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.86147 -40.67146 -39.10645 -37.61794 -36.32153 -34.27660 -33.78602 -32.56463 -31.75244 -29.96706 -29.28866 -28.28570 -27.34232 -25.62630 -24.37591 -23.96969 -23.36657 -22.10768 -21.47396 -21.30523 -19.73701 -18.80595 -17.42977 -17.38297 -17.08983 -16.53075 -16.43158 -16.22480 -16.13488 -15.77265 -15.53517 -15.47416 -15.27159 -15.17571 -14.59882 -14.40367 -14.19045 -13.98758 -13.83674 -13.60481 -13.51556 -13.31672 -13.18219 -13.00715 -12.87591 -12.78640 -12.59906 -12.45987 -12.31856 -12.15900 -12.12591 -12.03647 -11.81271 -11.68517 -11.39500 -11.13991 -10.76229 -10.59335 -9.72802 -9.46420 -9.29111 -8.83385 -8.45533 -6.13566 0.64846 0.75666 1.34637 1.45664 1.51038 2.18725 2.56789 2.82176 2.86298 3.18043 3.48179 3.56078 3.78041 3.90084 3.97403 3.99546 4.11640 4.15013 4.18685 4.20851 4.27512 4.29629 4.40657 4.43133 4.49956 4.59739 4.62151 4.64578 4.71357 4.73449 4.75206 4.82017 4.87362 4.89930 4.96794 4.98236 5.05564 5.09917 5.13851 5.18570 5.27151 5.30421 5.33200 5.62340 5.74917 5.79067 5.90137 5.92788 6.05061 6.19091 6.23029 6.29470 6.53385 6.99148 7.81611 8.77672 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022097 B = 0.001743 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.817243 B =16058.345751 C =16269.438880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.148 3.852 3 H 0.085 0.915 4 N -0.691 5.691 5 C 0.072 3.928 6 C 0.062 3.938 7 N -0.539 5.539 8 C 0.014 3.986 9 C 0.064 3.936 10 O -0.405 6.405 11 C 0.086 3.914 12 H 0.069 0.931 13 C -0.142 4.142 14 C 0.025 3.975 15 C -0.141 4.141 16 C -0.046 4.046 17 C -0.207 4.207 18 C 0.108 3.892 19 O -0.236 6.236 20 C -0.413 4.413 21 H 0.100 0.900 22 C -0.024 4.024 23 N -0.922 5.922 24 Si 1.018 2.982 25 H -0.257 1.257 26 H -0.272 1.272 27 H -0.258 1.258 28 C -0.242 4.242 29 C -0.069 4.069 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.346 0.654 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.030 0.970 38 H 0.096 0.904 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.032 0.968 46 H 0.099 0.901 47 H 0.142 0.858 48 H 0.109 0.891 49 H 0.272 0.728 50 H 0.116 0.884 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.831 12.169 -27.596 30.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.039 3.961 3 H 0.103 0.897 4 N -0.323 5.323 5 C -0.057 4.057 6 C -0.066 4.066 7 N -0.264 5.264 8 C -0.114 4.114 9 C -0.013 4.013 10 O -0.324 6.324 11 C 0.028 3.972 12 H 0.087 0.913 13 C -0.200 4.200 14 C -0.103 4.103 15 C -0.142 4.142 16 C -0.064 4.064 17 C -0.226 4.226 18 C 0.059 3.941 19 O -0.143 6.143 20 C -0.490 4.490 21 H 0.118 0.882 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.837 3.163 25 H -0.181 1.181 26 H -0.196 1.196 27 H -0.183 1.183 28 C -0.262 4.262 29 C -0.088 4.088 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.166 0.834 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.048 0.952 38 H 0.114 0.886 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.117 0.883 47 H 0.160 0.840 48 H 0.127 0.873 49 H 0.081 0.919 50 H 0.134 0.866 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.396 12.121 -27.427 30.660 hybrid contribution 0.263 -0.447 1.250 1.353 sum -6.133 11.674 -26.177 29.311 Atomic orbital electron populations 1.22417 0.95369 1.02558 1.02534 1.20111 0.93038 0.96466 0.86532 0.89686 1.60428 1.58280 1.10131 1.03410 1.21817 1.00128 0.94982 0.88753 1.21986 1.00248 0.94816 0.89518 1.62195 1.47355 1.14197 1.02666 1.22875 0.93290 0.94758 1.00447 1.22752 1.02781 0.93223 0.82500 1.87983 1.52562 1.49639 1.42259 1.22309 0.92268 0.87947 0.94649 0.91327 1.21764 1.02779 1.00393 0.95014 1.22848 1.00927 0.96767 0.89758 1.19654 1.05265 0.93308 0.95989 1.20673 0.96143 0.94252 0.95374 1.20467 1.09221 0.99397 0.93523 1.19942 0.93933 0.92507 0.87763 1.83937 1.70226 1.36502 1.23594 1.21771 1.38413 0.91354 0.97420 0.88234 1.26588 0.96956 0.97836 1.00773 1.70186 1.44126 1.10963 1.30750 0.84656 0.78808 0.77060 0.75736 1.18109 1.19608 1.18273 1.21211 1.10234 0.93481 1.01242 1.20921 0.96120 0.99949 0.91772 0.92213 0.91180 0.92302 0.83441 0.91552 0.93648 0.89814 0.95173 0.88589 0.95119 0.91791 0.87169 0.89052 0.91406 0.92479 0.94940 0.88312 0.83999 0.87287 0.91919 0.86572 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.14 71.98 0.66 -2.42 16 2 C 0.15 3.20 2.79 44.17 0.12 3.32 16 3 H 0.09 1.75 7.66 -2.39 -0.02 1.73 16 4 N -0.69 -13.42 5.71 -495.44 -2.83 -16.25 16 5 C 0.07 1.16 5.42 86.30 0.47 1.63 16 6 C 0.06 0.98 5.22 86.30 0.45 1.43 16 7 N -0.54 -8.24 4.73 -895.22 -4.23 -12.47 16 8 C 0.01 0.22 5.44 86.31 0.47 0.69 16 9 C 0.06 0.89 7.01 72.02 0.50 1.40 16 10 O -0.40 -7.17 10.47 -148.98 -1.56 -8.73 16 11 C 0.09 1.18 3.43 30.63 0.11 1.28 16 12 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 13 C -0.14 -1.44 9.57 71.98 0.69 -0.75 16 14 C 0.03 0.35 4.93 86.32 0.43 0.78 16 15 C -0.14 -4.31 4.96 -19.83 -0.10 -4.41 16 16 C -0.05 -1.55 9.31 22.25 0.21 -1.35 16 17 C -0.21 -9.01 9.99 22.39 0.22 -8.79 16 18 C 0.11 5.53 6.65 22.58 0.15 5.68 16 19 O -0.24 -14.53 9.76 -22.74 -0.22 -14.76 16 20 C -0.41 -24.58 9.49 67.92 0.64 -23.93 16 21 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 22 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 23 N -0.92 -57.51 13.67 21.61 0.30 -57.21 16 24 Si 1.02 43.51 29.55 68.60 2.03 45.54 16 25 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 28 C -0.24 -10.75 9.17 22.39 0.21 -10.55 16 29 C -0.07 -2.39 9.66 22.25 0.21 -2.18 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.02 7.45 -2.39 -0.02 1.00 16 32 H 0.06 1.08 8.13 -2.38 -0.02 1.06 16 33 H 0.35 5.92 7.82 -89.69 -0.70 5.22 16 34 H 0.07 1.14 6.43 -2.39 -0.02 1.13 16 35 H 0.05 0.68 7.44 -2.39 -0.02 0.66 16 36 H 0.08 1.16 8.04 -2.39 -0.02 1.14 16 37 H 0.03 0.58 8.12 -2.39 -0.02 0.56 16 38 H 0.10 1.31 6.38 -2.39 -0.02 1.29 16 39 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.10 1.09 8.09 -2.39 -0.02 1.07 16 47 H 0.14 3.79 7.25 -2.91 -0.02 3.77 16 48 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 49 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 50 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 51 H 0.14 3.81 8.03 -2.91 -0.02 3.79 16 Total: -1.00 -72.81 404.18 -0.40 -73.21 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.21 Total: 29.77 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 5.91 Total: -39.10 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -6.76 Total: -85.93 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -1.78 Total: -23.49 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.81 -0.40 -73.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776154792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.586 kcal (2) G-P(sol) polarization free energy of solvation -72.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds