Wall clock time and date at job start Tue Mar 31 2020 19:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47210 * 2 1 4 4 N 1.46897 * 109.47290 * 119.99862 * 2 1 3 5 5 C 1.46902 * 111.00337 * 275.00064 * 4 2 1 6 6 C 1.52992 * 109.47185 * 179.97438 * 5 4 2 7 7 N 1.46902 * 109.47185 * 179.97438 * 6 5 4 8 8 C 1.47014 * 110.99818 * 293.95338 * 7 6 5 9 9 C 1.53103 * 109.25875 * 182.38755 * 8 7 6 10 10 O 1.43014 * 109.25978 * 303.15780 * 9 8 7 11 11 C 1.43016 * 113.74007 * 58.66476 * 10 9 8 12 12 H 1.08992 * 109.50709 * 61.26647 * 11 10 9 13 13 C 1.53003 * 109.50462 * 181.35419 * 11 10 9 14 14 C 1.47019 * 110.99957 * 57.58619 * 7 6 5 15 15 C 1.50702 * 109.47111 * 239.99882 * 2 1 3 16 16 C 1.38297 * 119.92957 * 279.72729 * 15 2 1 17 17 C 1.38108 * 120.06676 * 179.72369 * 16 15 2 18 18 C 1.38881 * 119.92435 * 0.56992 * 17 16 15 19 19 O 1.35758 * 120.06354 * 179.68363 * 18 17 16 20 20 C 1.34832 * 116.99681 * 174.48317 * 19 18 17 21 21 H 1.08001 * 120.00294 * 5.06510 * 20 19 18 22 22 C 1.38653 * 119.99866 * 185.05156 * 20 19 18 23 23 N 1.31563 * 119.99868 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00140 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46983 * 90.00681 * 24 22 20 26 26 H 1.48507 * 109.47204 * 210.00489 * 24 22 20 27 27 H 1.48500 * 109.47236 * 330.00789 * 24 22 20 28 28 C 1.38877 * 119.86877 * 359.70339 * 18 17 16 29 29 C 1.38096 * 119.92802 * 359.97438 * 28 18 17 30 30 H 1.09006 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47045 * 300.00032 * 1 2 3 32 32 H 1.08995 * 109.47199 * 60.00028 * 1 2 3 33 33 H 1.00903 * 110.99848 * 38.95714 * 4 2 1 34 34 H 1.08995 * 109.46718 * 59.99631 * 5 4 2 35 35 H 1.09001 * 109.46692 * 300.00345 * 5 4 2 36 36 H 1.09003 * 109.47434 * 59.99881 * 6 5 4 37 37 H 1.09001 * 109.47604 * 299.99807 * 6 5 4 38 38 H 1.09003 * 109.50765 * 62.45722 * 8 7 6 39 39 H 1.08999 * 109.50704 * 302.32610 * 8 7 6 40 40 H 1.08993 * 109.50563 * 183.21605 * 9 8 7 41 41 H 1.09000 * 109.50155 * 63.08951 * 9 8 7 42 42 H 1.09002 * 109.47287 * 59.91477 * 13 11 10 43 43 H 1.09001 * 109.46994 * 179.91659 * 13 11 10 44 44 H 1.08997 * 109.46971 * 299.91460 * 13 11 10 45 45 H 1.08995 * 109.50269 * 57.67659 * 14 7 6 46 46 H 1.09002 * 109.50704 * 297.54425 * 14 7 6 47 47 H 1.07994 * 119.96954 * 359.97438 * 16 15 2 48 48 H 1.07994 * 120.03727 * 180.27378 * 17 16 15 49 49 H 0.97005 * 119.99776 * 179.97438 * 23 22 20 50 50 H 1.08002 * 120.03607 * 180.02562 * 28 18 17 51 51 H 1.08001 * 119.96512 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5951 -0.5331 3.5744 7 7 2.6585 0.3821 4.7217 8 6 3.6700 1.4270 4.5068 9 6 3.7445 2.3206 5.7478 10 8 2.4499 2.8667 6.0143 11 6 1.4405 1.8767 6.2292 12 1 1.7021 1.2727 7.0979 13 6 0.0947 2.5633 6.4708 14 6 1.3425 0.9788 4.9930 15 6 2.0323 -0.7104 -1.2305 16 6 2.0714 -2.0925 -1.2616 17 6 2.5259 -2.7466 -2.3899 18 6 2.9550 -2.0147 -3.4894 19 8 3.4083 -2.6546 -4.5976 20 6 3.7013 -1.8903 -5.6690 21 1 3.6502 -0.8141 -5.5948 22 6 4.0684 -2.4860 -6.8660 23 7 4.1304 -3.7971 -6.9564 24 14 4.4749 -1.4272 -8.3502 25 1 5.9258 -1.1104 -8.3497 26 1 4.1294 -2.1631 -9.5929 27 1 3.6930 -0.1663 -8.2878 28 6 2.9198 -0.6268 -3.4529 29 6 2.4581 0.0212 -2.3242 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.4496 -1.4979 1.4100 34 1 1.0872 0.6163 2.5525 35 1 2.7589 1.0462 2.1181 36 1 3.5904 -0.9272 3.3691 37 1 1.9184 -1.3565 3.8030 38 1 3.3934 2.0289 3.6411 39 1 4.6411 0.9634 4.3332 40 1 4.4520 3.1307 5.5710 41 1 4.0732 1.7295 6.6026 42 1 -0.1664 3.1671 5.6016 43 1 -0.6745 1.8083 6.6330 44 1 0.1663 3.2038 7.3498 45 1 0.6148 0.1879 5.1744 46 1 1.0287 1.5735 4.1351 47 1 1.7424 -2.6610 -0.4044 48 1 2.5520 -3.8259 -2.4154 49 1 4.3868 -4.2139 -7.7940 50 1 3.2525 -0.0550 -4.3066 51 1 2.4308 1.1005 -2.2950 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776154794.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:31 Heat of formation + Delta-G solvation = -41.717738 kcal Electronic energy + Delta-G solvation = -28328.625015 eV Core-core repulsion = 24421.621269 eV Total energy + Delta-G solvation = -3907.003745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.22258 -39.17671 -37.79645 -36.63088 -35.16982 -33.19863 -32.31561 -31.40183 -30.15749 -29.12579 -27.96992 -27.40290 -25.43329 -25.24085 -23.52576 -22.58443 -22.21624 -21.71581 -20.26897 -19.97854 -17.91018 -17.00992 -16.93600 -16.52941 -16.10294 -15.76313 -15.34071 -15.08239 -14.93971 -14.67407 -14.50027 -14.07656 -13.82739 -13.65545 -13.51135 -13.25133 -13.00213 -12.94539 -12.77339 -12.69577 -12.53127 -12.38993 -12.23473 -12.12693 -11.79890 -11.66607 -11.55318 -11.39244 -11.18902 -11.04702 -10.88984 -10.69771 -10.60629 -10.45233 -10.39720 -9.98589 -9.30269 -8.80876 -8.73028 -8.38747 -8.12415 -7.12016 -6.42723 -4.01481 2.26533 2.35865 3.13542 3.14340 3.19144 3.32303 3.45427 3.98330 4.14491 4.37196 4.56783 4.58984 4.65134 4.71147 4.79725 4.83659 4.92968 5.03504 5.05838 5.13593 5.14366 5.21723 5.25801 5.29978 5.31506 5.33574 5.39317 5.44796 5.50350 5.60971 5.62202 5.68093 5.73581 5.76618 5.81063 5.88866 5.96446 6.12186 6.25682 6.43565 6.55892 6.57550 6.74403 6.82625 6.86616 7.00898 7.10393 7.32100 7.34684 7.44928 7.48393 7.86807 8.02518 9.03090 9.74300 10.75456 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.001800 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.780421 B =15553.730112 C =15719.531718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.142 3.858 3 H 0.073 0.927 4 N -0.674 5.674 5 C 0.023 3.977 6 C 0.056 3.944 7 N -0.532 5.532 8 C 0.013 3.987 9 C 0.065 3.935 10 O -0.384 6.384 11 C 0.089 3.911 12 H 0.066 0.934 13 C -0.145 4.145 14 C 0.018 3.982 15 C -0.167 4.167 16 C -0.053 4.053 17 C -0.194 4.194 18 C 0.153 3.847 19 O -0.180 6.180 20 C -0.391 4.391 21 H 0.091 0.909 22 C 0.038 3.962 23 N -0.864 5.864 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.233 4.233 29 C -0.068 4.068 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.339 0.661 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.048 0.952 47 H 0.108 0.892 48 H 0.115 0.885 49 H 0.269 0.731 50 H 0.125 0.875 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.207 10.861 24.639 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.033 3.967 3 H 0.091 0.909 4 N -0.305 5.305 5 C -0.108 4.108 6 C -0.073 4.073 7 N -0.255 5.255 8 C -0.116 4.116 9 C -0.012 4.012 10 O -0.303 6.303 11 C 0.031 3.969 12 H 0.084 0.916 13 C -0.203 4.203 14 C -0.110 4.110 15 C -0.169 4.169 16 C -0.071 4.071 17 C -0.214 4.214 18 C 0.100 3.900 19 O -0.083 6.083 20 C -0.467 4.467 21 H 0.108 0.892 22 C -0.166 4.166 23 N -0.499 5.499 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.193 1.193 28 C -0.252 4.252 29 C -0.087 4.087 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.157 0.843 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.066 0.934 47 H 0.126 0.874 48 H 0.133 0.867 49 H 0.079 0.921 50 H 0.143 0.857 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.330 10.451 24.678 27.325 hybrid contribution -0.866 0.835 -1.435 1.873 sum -6.197 11.286 23.244 26.571 Atomic orbital electron populations 1.22485 0.97265 1.02172 1.01471 1.20179 0.91799 0.96589 0.88157 0.90925 1.60560 1.57812 1.09222 1.02914 1.22654 0.99416 0.96815 0.91888 1.22220 1.03266 0.94917 0.86848 1.62522 1.05980 1.18186 1.38856 1.22851 0.97022 0.93600 0.98090 1.22656 0.85036 0.97213 0.96326 1.87989 1.17853 1.32840 1.91637 1.22158 0.89049 0.89285 0.96434 0.91629 1.21755 0.94453 1.01227 1.02861 1.22878 0.91752 0.98230 0.98143 1.19047 1.09288 0.93565 0.94968 1.20296 0.97714 0.93343 0.95771 1.20212 1.08414 0.99311 0.93417 1.19392 0.91262 0.90912 0.88458 1.83982 1.70877 1.35266 1.18213 1.21310 1.47244 0.90725 0.87448 0.89154 1.25279 0.96884 0.96291 0.98120 1.70045 1.44349 1.08630 1.26859 0.85725 0.78985 0.79058 0.79725 1.19911 1.20277 1.19255 1.21103 1.09720 0.94415 0.99989 1.20533 0.97332 0.98030 0.92816 0.92280 0.93631 0.91786 0.84259 0.95339 0.91170 0.89329 0.90534 0.93450 0.89287 0.88398 0.92334 0.91857 0.90897 0.91531 0.89774 0.93386 0.87376 0.86697 0.92085 0.85689 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.14 37.16 0.34 -1.66 16 2 C 0.14 1.85 2.79 -68.86 -0.19 1.66 16 3 H 0.07 0.95 7.66 -51.93 -0.40 0.56 16 4 N -0.67 -7.78 5.70 -107.96 -0.61 -8.40 16 5 C 0.02 0.23 4.77 -3.83 -0.02 0.21 16 6 C 0.06 0.49 5.64 -3.83 -0.02 0.46 16 7 N -0.53 -4.55 4.94 -234.30 -1.16 -5.71 16 8 C 0.01 0.10 5.33 -3.71 -0.02 0.08 16 9 C 0.06 0.50 7.01 37.21 0.26 0.76 16 10 O -0.38 -3.65 10.47 -35.23 -0.37 -4.02 16 11 C 0.09 0.69 3.42 -26.68 -0.09 0.60 16 12 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 13 C -0.15 -0.89 9.57 37.16 0.36 -0.53 16 14 C 0.02 0.14 4.41 -3.71 -0.02 0.13 16 15 C -0.17 -2.81 4.96 -104.57 -0.52 -3.33 16 16 C -0.05 -0.93 9.32 -39.61 -0.37 -1.30 16 17 C -0.19 -4.14 9.99 -39.39 -0.39 -4.54 16 18 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 19 O -0.18 -5.19 9.76 0.02 0.00 -5.19 16 20 C -0.39 -11.03 9.49 30.89 0.29 -10.74 16 21 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 22 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 23 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 24 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 C -0.23 -5.12 9.17 -39.40 -0.36 -5.48 16 29 C -0.07 -1.26 9.66 -39.61 -0.38 -1.64 16 30 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.04 0.45 7.45 -51.93 -0.39 0.06 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.34 3.56 7.81 -39.29 -0.31 3.26 16 34 H 0.03 0.27 5.71 -51.93 -0.30 -0.02 16 35 H 0.07 0.76 6.52 -51.93 -0.34 0.42 16 36 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.43 6.59 -51.93 -0.34 0.09 16 39 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.42 6.41 -51.93 -0.33 0.09 16 47 H 0.11 1.62 7.23 -52.49 -0.38 1.24 16 48 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 49 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 50 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 51 H 0.10 1.63 8.03 -52.49 -0.42 1.21 16 LS Contribution 400.47 15.07 6.04 6.04 Total: -1.00 -31.16 400.47 -10.26 -41.42 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -8.40 Total: 5.83 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -1.49 Total: -20.87 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -1.01 Total: -38.87 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.37 Total: -9.21 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.16 -10.26 -41.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776154794.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.299 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds