Wall clock time and date at job start Tue Mar 31 2020 19:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47210 * 2 1 4 4 N 1.46897 * 109.47290 * 119.99862 * 2 1 3 5 5 C 1.46902 * 111.00337 * 275.00064 * 4 2 1 6 6 C 1.52992 * 109.47185 * 179.97438 * 5 4 2 7 7 N 1.46902 * 109.47185 * 179.97438 * 6 5 4 8 8 C 1.47014 * 110.99818 * 293.95338 * 7 6 5 9 9 C 1.53103 * 109.25875 * 182.38755 * 8 7 6 10 10 O 1.43014 * 109.25978 * 303.15780 * 9 8 7 11 11 C 1.43016 * 113.74007 * 58.66476 * 10 9 8 12 12 H 1.08992 * 109.50709 * 61.26647 * 11 10 9 13 13 C 1.53003 * 109.50462 * 181.35419 * 11 10 9 14 14 C 1.47019 * 110.99957 * 57.58619 * 7 6 5 15 15 C 1.50702 * 109.47111 * 239.99882 * 2 1 3 16 16 C 1.38297 * 119.92957 * 279.72729 * 15 2 1 17 17 C 1.38108 * 120.06676 * 179.72369 * 16 15 2 18 18 C 1.38881 * 119.92435 * 0.56992 * 17 16 15 19 19 O 1.35758 * 120.06354 * 179.68363 * 18 17 16 20 20 C 1.34832 * 116.99681 * 174.48317 * 19 18 17 21 21 H 1.08001 * 120.00294 * 5.06510 * 20 19 18 22 22 C 1.38653 * 119.99866 * 185.05156 * 20 19 18 23 23 N 1.31563 * 119.99868 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00140 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46983 * 90.00681 * 24 22 20 26 26 H 1.48507 * 109.47204 * 210.00489 * 24 22 20 27 27 H 1.48500 * 109.47236 * 330.00789 * 24 22 20 28 28 C 1.38877 * 119.86877 * 359.70339 * 18 17 16 29 29 C 1.38096 * 119.92802 * 359.97438 * 28 18 17 30 30 H 1.09006 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47045 * 300.00032 * 1 2 3 32 32 H 1.08995 * 109.47199 * 60.00028 * 1 2 3 33 33 H 1.00903 * 110.99848 * 38.95714 * 4 2 1 34 34 H 1.08995 * 109.46718 * 59.99631 * 5 4 2 35 35 H 1.09001 * 109.46692 * 300.00345 * 5 4 2 36 36 H 1.09003 * 109.47434 * 59.99881 * 6 5 4 37 37 H 1.09001 * 109.47604 * 299.99807 * 6 5 4 38 38 H 1.09003 * 109.50765 * 62.45722 * 8 7 6 39 39 H 1.08999 * 109.50704 * 302.32610 * 8 7 6 40 40 H 1.08993 * 109.50563 * 183.21605 * 9 8 7 41 41 H 1.09000 * 109.50155 * 63.08951 * 9 8 7 42 42 H 1.09002 * 109.47287 * 59.91477 * 13 11 10 43 43 H 1.09001 * 109.46994 * 179.91659 * 13 11 10 44 44 H 1.08997 * 109.46971 * 299.91460 * 13 11 10 45 45 H 1.08995 * 109.50269 * 57.67659 * 14 7 6 46 46 H 1.09002 * 109.50704 * 297.54425 * 14 7 6 47 47 H 1.07994 * 119.96954 * 359.97438 * 16 15 2 48 48 H 1.07994 * 120.03727 * 180.27378 * 17 16 15 49 49 H 0.97005 * 119.99776 * 179.97438 * 23 22 20 50 50 H 1.08002 * 120.03607 * 180.02562 * 28 18 17 51 51 H 1.08001 * 119.96512 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5951 -0.5331 3.5744 7 7 2.6585 0.3821 4.7217 8 6 3.6700 1.4270 4.5068 9 6 3.7445 2.3206 5.7478 10 8 2.4499 2.8667 6.0143 11 6 1.4405 1.8767 6.2292 12 1 1.7021 1.2727 7.0979 13 6 0.0947 2.5633 6.4708 14 6 1.3425 0.9788 4.9930 15 6 2.0323 -0.7104 -1.2305 16 6 2.0714 -2.0925 -1.2616 17 6 2.5259 -2.7466 -2.3899 18 6 2.9550 -2.0147 -3.4894 19 8 3.4083 -2.6546 -4.5976 20 6 3.7013 -1.8903 -5.6690 21 1 3.6502 -0.8141 -5.5948 22 6 4.0684 -2.4860 -6.8660 23 7 4.1304 -3.7971 -6.9564 24 14 4.4749 -1.4272 -8.3502 25 1 5.9258 -1.1104 -8.3497 26 1 4.1294 -2.1631 -9.5929 27 1 3.6930 -0.1663 -8.2878 28 6 2.9198 -0.6268 -3.4529 29 6 2.4581 0.0212 -2.3242 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.4496 -1.4979 1.4100 34 1 1.0872 0.6163 2.5525 35 1 2.7589 1.0462 2.1181 36 1 3.5904 -0.9272 3.3691 37 1 1.9184 -1.3565 3.8030 38 1 3.3934 2.0289 3.6411 39 1 4.6411 0.9634 4.3332 40 1 4.4520 3.1307 5.5710 41 1 4.0732 1.7295 6.6026 42 1 -0.1664 3.1671 5.6016 43 1 -0.6745 1.8083 6.6330 44 1 0.1663 3.2038 7.3498 45 1 0.6148 0.1879 5.1744 46 1 1.0287 1.5735 4.1351 47 1 1.7424 -2.6610 -0.4044 48 1 2.5520 -3.8259 -2.4154 49 1 4.3868 -4.2139 -7.7940 50 1 3.2525 -0.0550 -4.3066 51 1 2.4308 1.1005 -2.2950 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776154794.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:30 Heat of formation + Delta-G solvation = -63.319792 kcal Electronic energy + Delta-G solvation = -28329.561750 eV Core-core repulsion = 24421.621269 eV Total energy + Delta-G solvation = -3907.940481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.94704 -40.74085 -39.12352 -37.72413 -36.29333 -34.27226 -33.75272 -32.48207 -31.76206 -29.96713 -29.26634 -28.07944 -27.35547 -26.02478 -24.23474 -23.99708 -23.35867 -22.72840 -21.48934 -20.86837 -19.74924 -18.82228 -17.57775 -17.27785 -17.08456 -16.54602 -16.40580 -16.14422 -16.09151 -15.87014 -15.62879 -15.48853 -15.28211 -15.12833 -14.50649 -14.41468 -14.24525 -14.00353 -13.84612 -13.55990 -13.53656 -13.43201 -13.14984 -13.04764 -12.94275 -12.86875 -12.57996 -12.44738 -12.33212 -12.16120 -12.13867 -12.05881 -11.79805 -11.73428 -11.43555 -11.15397 -10.77868 -10.61285 -9.74422 -9.46762 -9.25465 -8.84296 -8.46363 -6.14292 0.63257 0.73891 1.34296 1.43739 1.51865 2.17940 2.69075 2.81692 2.87298 3.14996 3.33687 3.54829 3.78484 3.91188 3.95852 4.02695 4.06141 4.10588 4.16283 4.20131 4.22415 4.26338 4.35640 4.39430 4.47300 4.54537 4.61460 4.62899 4.70959 4.72843 4.74293 4.81686 4.84517 4.88070 4.94552 4.99570 5.05647 5.11850 5.13590 5.18493 5.24810 5.26845 5.31091 5.60228 5.73542 5.76411 5.91424 5.94432 6.04312 6.15091 6.23934 6.27016 6.49264 6.98417 7.80588 8.76995 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.001800 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.780421 B =15553.730112 C =15719.531718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.147 3.853 3 H 0.079 0.921 4 N -0.683 5.683 5 C 0.033 3.967 6 C 0.062 3.938 7 N -0.536 5.536 8 C 0.013 3.987 9 C 0.063 3.937 10 O -0.404 6.404 11 C 0.084 3.916 12 H 0.066 0.934 13 C -0.142 4.142 14 C 0.021 3.979 15 C -0.141 4.141 16 C -0.044 4.044 17 C -0.206 4.206 18 C 0.110 3.890 19 O -0.235 6.235 20 C -0.413 4.413 21 H 0.100 0.900 22 C -0.025 4.025 23 N -0.921 5.921 24 Si 1.018 2.982 25 H -0.263 1.263 26 H -0.271 1.271 27 H -0.254 1.254 28 C -0.242 4.242 29 C -0.070 4.070 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.348 0.652 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.038 0.962 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.041 0.959 47 H 0.144 0.856 48 H 0.111 0.889 49 H 0.272 0.728 50 H 0.116 0.884 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 12.876 26.951 30.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.037 3.963 3 H 0.097 0.903 4 N -0.315 5.315 5 C -0.097 4.097 6 C -0.066 4.066 7 N -0.260 5.260 8 C -0.115 4.115 9 C -0.013 4.013 10 O -0.323 6.323 11 C 0.027 3.973 12 H 0.084 0.916 13 C -0.200 4.200 14 C -0.107 4.107 15 C -0.143 4.143 16 C -0.063 4.063 17 C -0.225 4.225 18 C 0.060 3.940 19 O -0.142 6.142 20 C -0.489 4.489 21 H 0.117 0.883 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.838 3.162 25 H -0.188 1.188 26 H -0.195 1.195 27 H -0.177 1.177 28 C -0.262 4.262 29 C -0.089 4.089 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.167 0.833 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.114 0.886 46 H 0.059 0.941 47 H 0.162 0.838 48 H 0.129 0.871 49 H 0.081 0.919 50 H 0.134 0.866 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.597 12.491 27.057 30.523 hybrid contribution -0.589 0.296 -1.763 1.882 sum -7.185 12.787 25.294 29.239 Atomic orbital electron populations 1.22410 0.95434 1.02648 1.02345 1.20117 0.93011 0.96266 0.86930 0.90320 1.60439 1.58123 1.09866 1.03069 1.22571 0.99628 0.96179 0.91353 1.22147 1.02926 0.95067 0.86508 1.62548 1.06453 1.18380 1.38575 1.22854 0.97162 0.93510 0.97947 1.22749 0.84782 0.97633 0.96178 1.87970 1.18679 1.33954 1.91722 1.22294 0.89416 0.89236 0.96381 0.91618 1.21761 0.94035 1.01577 1.02582 1.22892 0.91557 0.98433 0.97841 1.19615 1.05429 0.93386 0.95824 1.20665 0.96128 0.94109 0.95363 1.20479 1.08684 0.99449 0.93880 1.19941 0.93232 0.92435 0.88434 1.83942 1.73863 1.36719 1.19645 1.21798 1.47597 0.91383 0.88098 0.88279 1.26588 0.96504 0.97808 1.01272 1.70192 1.46947 1.10868 1.27962 0.84592 0.79172 0.77392 0.75073 1.18841 1.19522 1.17727 1.21197 1.10265 0.93534 1.01158 1.20899 0.96271 0.99820 0.91880 0.92037 0.91503 0.92278 0.83259 0.94471 0.92245 0.90234 0.89577 0.94408 0.88900 0.87199 0.92023 0.92416 0.89144 0.91511 0.88570 0.94113 0.83848 0.87120 0.91896 0.86622 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 9.14 71.98 0.66 -2.50 16 2 C 0.15 3.25 2.79 44.17 0.12 3.37 16 3 H 0.08 1.73 7.66 -2.39 -0.02 1.71 16 4 N -0.68 -13.21 5.70 -495.46 -2.82 -16.03 16 5 C 0.03 0.54 4.77 86.30 0.41 0.95 16 6 C 0.06 0.91 5.64 86.30 0.49 1.40 16 7 N -0.54 -7.93 4.94 -895.20 -4.42 -12.35 16 8 C 0.01 0.20 5.33 86.32 0.46 0.66 16 9 C 0.06 0.87 7.01 72.02 0.50 1.38 16 10 O -0.40 -7.04 10.47 -148.98 -1.56 -8.60 16 11 C 0.08 1.14 3.42 30.63 0.10 1.25 16 12 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 13 C -0.14 -1.43 9.57 71.98 0.69 -0.74 16 14 C 0.02 0.27 4.41 86.31 0.38 0.66 16 15 C -0.14 -4.36 4.96 -19.83 -0.10 -4.46 16 16 C -0.04 -1.49 9.32 22.25 0.21 -1.28 16 17 C -0.21 -8.91 9.99 22.39 0.22 -8.68 16 18 C 0.11 5.58 6.65 22.58 0.15 5.73 16 19 O -0.23 -14.45 9.76 -22.85 -0.22 -14.67 16 20 C -0.41 -24.49 9.49 67.92 0.64 -23.85 16 21 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 22 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 23 N -0.92 -57.33 13.67 21.61 0.30 -57.03 16 24 Si 1.02 43.50 29.55 68.60 2.03 45.53 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 27 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 28 C -0.24 -10.80 9.17 22.39 0.21 -10.59 16 29 C -0.07 -2.46 9.66 22.25 0.21 -2.25 16 30 H 0.06 1.14 8.13 -2.38 -0.02 1.12 16 31 H 0.07 1.01 7.45 -2.39 -0.02 0.99 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.35 5.82 7.81 -89.69 -0.70 5.12 16 34 H 0.04 0.56 5.71 -2.39 -0.01 0.55 16 35 H 0.06 1.12 6.52 -2.39 -0.02 1.11 16 36 H 0.08 1.34 8.11 -2.39 -0.02 1.32 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.04 0.63 6.59 -2.39 -0.02 0.61 16 39 H 0.09 1.26 8.12 -2.39 -0.02 1.24 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.04 0.60 6.41 -2.39 -0.02 0.59 16 47 H 0.14 3.78 7.23 -2.91 -0.02 3.76 16 48 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 49 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 50 H 0.12 5.26 5.64 -2.91 -0.02 5.25 16 51 H 0.14 3.85 8.03 -2.91 -0.02 3.83 16 Total: -1.00 -72.18 400.47 -0.65 -72.83 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.22 Total: 30.24 kcal Atomic # 6 Polarization: -45.74 SS G_CDS: 5.83 Total: -39.91 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -6.95 Total: -85.41 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -1.78 Total: -23.27 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -72.18 -0.65 -72.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776154794.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.506 kcal (2) G-P(sol) polarization free energy of solvation -72.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds