Wall clock time and date at job start Tue Mar 31 2020 19:43:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09004 * 109.46924 * 2 1
4 4 N 1.46900 * 109.47215 * 119.99690 * 2 1 3
5 5 C 1.46906 * 110.99998 * 279.27353 * 4 2 1
6 6 H 1.08996 * 109.47174 * 30.89831 * 5 4 2
7 7 C 1.53000 * 109.46744 * 150.89469 * 5 4 2
8 8 C 1.50700 * 109.47085 * 270.89082 * 5 4 2
9 9 C 1.38304 * 119.92729 * 139.99835 * 8 5 4
10 10 C 1.38097 * 120.06672 * 179.97438 * 9 8 5
11 11 C 1.38879 * 119.93338 * 0.02562 * 10 9 8
12 12 O 1.35752 * 120.06799 * 179.97438 * 11 10 9
13 13 C 1.34826 * 117.00165 * 5.86220 * 12 11 10
14 14 H 1.07998 * 120.00114 * 354.90633 * 13 12 11
15 15 C 1.38659 * 120.00132 * 174.90312 * 13 12 11
16 16 N 1.31556 * 119.99819 * 0.02562 * 15 13 12
17 17 Si 1.86796 * 120.00310 * 180.02562 * 15 13 12
18 18 H 1.48506 * 109.46960 * 0.02562 * 17 15 13
19 19 H 1.48495 * 109.47328 * 120.00113 * 17 15 13
20 20 H 1.48500 * 109.47232 * 240.00530 * 17 15 13
21 21 C 1.38873 * 119.86008 * 0.24902 * 11 10 9
22 22 C 1.38103 * 119.93094 * 359.49400 * 21 11 10
23 23 C 1.52997 * 109.47397 * 239.99713 * 2 1 3
24 24 H 1.09004 * 109.50741 * 184.99819 * 23 2 1
25 25 C 1.53103 * 109.50523 * 64.91119 * 23 2 1
26 26 N 1.47010 * 109.25461 * 183.26281 * 25 23 2
27 27 C 1.46908 * 110.99874 * 182.34797 * 26 25 23
28 28 C 1.47019 * 110.79179 * 58.55307 * 26 25 23
29 29 C 1.53096 * 109.25173 * 301.40480 * 28 26 25
30 30 O 1.43012 * 109.50350 * 305.08844 * 23 2 1
31 31 H 1.09000 * 109.47349 * 184.78753 * 1 2 3
32 32 H 1.09004 * 109.47379 * 304.78240 * 1 2 3
33 33 H 1.08993 * 109.47574 * 64.78779 * 1 2 3
34 34 H 1.00898 * 111.00381 * 155.32043 * 4 2 1
35 35 H 1.09006 * 109.47043 * 184.96988 * 7 5 4
36 36 H 1.08999 * 109.47321 * 304.96230 * 7 5 4
37 37 H 1.09004 * 109.47543 * 64.97149 * 7 5 4
38 38 H 1.07996 * 119.96646 * 0.02562 * 9 8 5
39 39 H 1.07999 * 120.03341 * 180.02562 * 10 9 8
40 40 H 0.97002 * 119.99942 * 359.97438 * 16 15 13
41 41 H 1.07998 * 120.03597 * 179.73374 * 21 11 10
42 42 H 1.08006 * 119.96544 * 180.23488 * 22 21 11
43 43 H 1.08998 * 109.50735 * 303.15378 * 25 23 2
44 44 H 1.08998 * 109.50521 * 63.28196 * 25 23 2
45 45 H 1.08994 * 109.47097 * 300.27702 * 27 26 25
46 46 H 1.09005 * 109.46385 * 60.27690 * 27 26 25
47 47 H 1.09000 * 109.46973 * 180.27266 * 27 26 25
48 48 H 1.09004 * 109.50913 * 181.47390 * 28 26 25
49 49 H 1.08993 * 109.54234 * 61.35760 * 28 26 25
50 50 H 1.08998 * 109.50988 * 296.91268 * 29 28 26
51 51 H 1.09005 * 109.50708 * 176.78110 * 29 28 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0196 -0.6924 1.1995
5 6 1.9868 0.1948 2.3698
6 1 1.1652 0.9035 2.2656
7 6 1.7833 -0.6391 3.6364
8 6 3.2893 0.9464 2.4672
9 6 3.2905 2.2808 2.8309
10 6 4.4825 2.9722 2.9215
11 6 5.6808 2.3264 2.6464
12 8 6.8542 3.0035 2.7341
13 6 6.7995 4.2639 3.2098
14 1 5.8438 4.7196 3.4231
15 6 7.9701 4.9750 3.4253
16 7 9.1342 4.4201 3.1650
17 14 7.8944 6.7209 4.0851
18 1 6.4766 7.1098 4.2948
19 1 8.6235 6.7941 5.3767
20 1 8.5228 7.6468 3.1088
21 6 5.6758 0.9880 2.2759
22 6 4.4809 0.3006 2.1922
23 6 2.0400 -0.7213 -1.2492
24 1 3.1264 -0.7998 -1.2061
25 6 1.6335 0.0676 -2.4968
26 7 2.0577 -0.6695 -3.6959
27 6 1.7354 0.0814 -4.9168
28 6 1.4528 -2.0091 -3.7263
29 6 1.8621 -2.7765 -2.4664
30 8 1.4686 -2.0308 -1.3111
31 1 -0.3634 -1.0241 0.0858
32 1 -0.3634 0.5863 0.8441
33 1 -0.3634 0.4377 -0.9297
34 1 2.9471 -1.0609 1.0510
35 1 1.6706 0.0243 4.4940
36 1 0.8868 -1.2498 3.5292
37 1 2.6475 -1.2858 3.7884
38 1 2.3584 2.7824 3.0451
39 1 4.4828 4.0140 3.2060
40 1 9.1735 3.5133 2.8227
41 1 6.6057 0.4842 2.0571
42 1 4.4767 -0.7413 1.9078
43 1 0.5508 0.1930 -2.5114
44 1 2.1136 1.0460 -2.4812
45 1 0.6596 0.2489 -4.9670
46 1 2.2522 1.0410 -4.9001
47 1 2.0555 -0.4886 -5.7890
48 1 1.8012 -2.5459 -4.6087
49 1 0.3672 -1.9182 -3.7606
50 1 2.9432 -2.9147 -2.4595
51 1 1.3700 -3.7491 -2.4567
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000776171008.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:43:23
Heat of formation + Delta-G solvation = -64.784448 kcal
Electronic energy + Delta-G solvation = -29428.857321 eV
Core-core repulsion = 25520.853328 eV
Total energy + Delta-G solvation = -3908.003993 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-41.19559 -40.76859 -39.28983 -37.37643 -36.48396 -34.60186 -33.95087 -31.98670
-31.12322 -29.84327 -29.38037 -28.96079 -27.02025 -25.68188 -25.07965 -24.03631
-23.56296 -22.14094 -21.44060 -20.93960 -20.12626 -18.80891 -17.70708 -17.43749
-17.01612 -16.78669 -16.49934 -16.05009 -15.92902 -15.82683 -15.70295 -15.54362
-15.50068 -14.86407 -14.76434 -14.53560 -14.45838 -14.10498 -13.76527 -13.54041
-13.37085 -13.17934 -13.05931 -12.93197 -12.80541 -12.66497 -12.61604 -12.44932
-12.26005 -12.15770 -12.00369 -11.93030 -11.82890 -11.65508 -11.37065 -11.26124
-10.77152 -10.59135 -9.90661 -9.44244 -9.39834 -9.01522 -8.95369 -6.26635
0.47078 0.57968 1.46946 1.60861 1.74259 2.33239 2.68291 2.77956
2.81552 3.07599 3.20240 3.30943 3.77756 3.86588 3.90578 3.96343
3.98254 4.02707 4.07674 4.16222 4.29447 4.33617 4.42553 4.46689
4.48442 4.54265 4.60303 4.61118 4.63118 4.66595 4.77324 4.81966
4.88884 4.92932 4.93512 4.97791 5.03247 5.07394 5.09778 5.18803
5.23608 5.40271 5.47257 5.49851 5.61330 5.68107 5.86912 5.93383
6.01087 6.13542 6.25799 6.28051 6.44129 6.84327 7.60450 8.48592
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.013890 B = 0.002608 C = 0.002385
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2015.318817 B =10733.212141 C =11735.250890
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.094 3.906
3 H 0.048 0.952
4 N -0.666 5.666
5 C 0.142 3.858
6 H 0.088 0.912
7 C -0.128 4.128
8 C -0.178 4.178
9 C -0.063 4.063
10 C -0.236 4.236
11 C 0.115 3.885
12 O -0.253 6.253
13 C -0.486 4.486
14 H 0.091 0.909
15 C -0.045 4.045
16 N -0.918 5.918
17 Si 1.149 2.851
18 H -0.259 1.259
19 H -0.270 1.270
20 H -0.270 1.270
21 C -0.199 4.199
22 C -0.064 4.064
23 C 0.101 3.899
24 H 0.049 0.951
25 C 0.027 3.973
26 N -0.559 5.559
27 C 0.025 3.975
28 C 0.020 3.980
29 C 0.056 3.944
30 O -0.375 6.375
31 H 0.062 0.938
32 H 0.056 0.944
33 H 0.060 0.940
34 H 0.340 0.660
35 H 0.058 0.942
36 H 0.071 0.929
37 H 0.048 0.952
38 H 0.141 0.859
39 H 0.116 0.884
40 H 0.260 0.740
41 H 0.113 0.887
42 H 0.143 0.857
43 H 0.052 0.948
44 H 0.080 0.920
45 H 0.032 0.968
46 H 0.068 0.932
47 H 0.081 0.919
48 H 0.100 0.900
49 H 0.042 0.958
50 H 0.052 0.948
51 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.203 -11.650 -11.355 26.725
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.016 4.016
3 H 0.066 0.934
4 N -0.298 5.298
5 C 0.032 3.968
6 H 0.106 0.894
7 C -0.186 4.186
8 C -0.180 4.180
9 C -0.081 4.081
10 C -0.256 4.256
11 C 0.065 3.935
12 O -0.161 6.161
13 C -0.562 4.562
14 H 0.108 0.892
15 C -0.241 4.241
16 N -0.553 5.553
17 Si 0.965 3.035
18 H -0.183 1.183
19 H -0.195 1.195
20 H -0.195 1.195
21 C -0.218 4.218
22 C -0.082 4.082
23 C 0.043 3.957
24 H 0.067 0.933
25 C -0.102 4.102
26 N -0.285 5.285
27 C -0.123 4.123
28 C -0.108 4.108
29 C -0.020 4.020
30 O -0.293 6.293
31 H 0.081 0.919
32 H 0.075 0.925
33 H 0.079 0.921
34 H 0.160 0.840
35 H 0.077 0.923
36 H 0.090 0.910
37 H 0.067 0.933
38 H 0.159 0.841
39 H 0.134 0.866
40 H 0.069 0.931
41 H 0.131 0.869
42 H 0.160 0.840
43 H 0.070 0.930
44 H 0.099 0.901
45 H 0.050 0.950
46 H 0.087 0.913
47 H 0.100 0.900
48 H 0.118 0.882
49 H 0.061 0.939
50 H 0.070 0.930
51 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -20.274 -10.869 -10.685 25.364
hybrid contribution -0.112 -0.433 -0.973 1.071
sum -20.385 -11.302 -11.659 26.062
Atomic orbital electron populations
1.21689 0.93056 1.02501 1.01288 1.21491 0.97262 0.94830 0.88024
0.93368 1.60868 1.30752 1.35406 1.02741 1.20425 0.92015 0.92700
0.91657 0.89398 1.21706 1.02119 0.99523 0.95211 1.20544 0.96499
0.94581 1.06352 1.20981 0.96674 0.94021 0.96454 1.21273 0.92729
1.01168 1.10392 1.19795 0.86178 0.92426 0.95068 1.83643 1.29034
1.28051 1.75391 1.22628 0.97751 0.88283 1.47551 0.89187 1.28382
0.89586 1.09994 0.96124 1.70657 1.26480 1.16264 1.41895 0.82505
0.77293 0.66964 0.76707 1.18314 1.19505 1.19462 1.20416 0.99639
0.91694 1.10086 1.20685 0.90451 0.99383 0.97663 1.22130 0.96292
0.83608 0.93706 0.93298 1.22777 0.99513 0.97731 0.90156 1.62174
1.59589 1.03759 1.02929 1.22416 0.99276 0.98925 0.91658 1.22841
0.97607 0.90099 1.00272 1.22821 1.00117 0.95254 0.83852 1.88072
1.71133 1.26385 1.43738 0.91907 0.92484 0.92126 0.83989 0.92340
0.91001 0.93332 0.84116 0.86631 0.93123 0.86924 0.83986 0.92955
0.90142 0.94986 0.91287 0.90029 0.88214 0.93942 0.93006 0.86517
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.36 8.90 71.98 0.64 -1.72 16
2 C 0.09 1.99 2.32 44.91 0.10 2.09 16
3 H 0.05 1.13 7.83 -2.38 -0.02 1.11 16
4 N -0.67 -14.81 6.00 -473.31 -2.84 -17.65 16
5 C 0.14 3.26 2.63 44.17 0.12 3.38 16
6 H 0.09 1.88 6.71 -2.39 -0.02 1.87 16
7 C -0.13 -2.72 9.50 71.98 0.68 -2.03 16
8 C -0.18 -5.32 4.81 -19.83 -0.10 -5.41 16
9 C -0.06 -2.12 9.66 22.25 0.21 -1.90 16
10 C -0.24 -10.31 9.17 22.39 0.21 -10.10 16
11 C 0.11 5.71 6.65 22.58 0.15 5.86 16
12 O -0.25 -15.18 9.16 -22.72 -0.21 -15.39 16
13 C -0.49 -28.66 9.49 67.92 0.64 -28.02 16
14 H 0.09 4.96 5.21 -2.91 -0.02 4.95 16
15 C -0.04 -2.59 5.49 84.83 0.47 -2.13 16
16 N -0.92 -57.89 13.70 21.61 0.30 -57.59 16
17 Si 1.15 48.56 29.92 68.60 2.05 50.61 16
18 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16
19 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16
20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16
21 C -0.20 -8.37 9.99 22.39 0.22 -8.14 16
22 C -0.06 -2.08 9.06 22.25 0.20 -1.88 16
23 C 0.10 2.14 2.48 30.63 0.08 2.22 16
24 H 0.05 1.19 8.03 -2.38 -0.02 1.17 16
25 C 0.03 0.51 4.78 86.32 0.41 0.93 16
26 N -0.56 -10.08 4.98 -921.41 -4.59 -14.67 16
27 C 0.02 0.35 9.61 127.69 1.23 1.58 16
28 C 0.02 0.29 5.66 86.31 0.49 0.78 16
29 C 0.06 0.91 7.01 72.01 0.50 1.42 16
30 O -0.37 -7.92 9.63 -148.98 -1.44 -9.35 16
31 H 0.06 1.29 7.72 -2.39 -0.02 1.27 16
32 H 0.06 0.99 7.25 -2.38 -0.02 0.98 16
33 H 0.06 1.00 6.29 -2.39 -0.02 0.99 16
34 H 0.34 7.94 5.87 -89.70 -0.53 7.42 16
35 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16
36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
38 H 0.14 3.80 8.03 -2.91 -0.02 3.78 16
39 H 0.12 5.23 5.64 -2.91 -0.02 5.22 16
40 H 0.26 17.13 7.97 -92.71 -0.74 16.39 16
41 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16
42 H 0.14 3.78 6.53 -2.91 -0.02 3.76 16
43 H 0.05 0.95 6.33 -2.39 -0.02 0.93 16
44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16
45 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16
46 H 0.07 0.99 8.14 -2.38 -0.02 0.98 16
47 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16
48 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16
49 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16
50 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16
51 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16
Total: -1.00 -70.54 398.94 -0.04 -70.58
By element:
Atomic # 1 Polarization: 36.12 SS G_CDS: 0.42 Total: 36.55 kcal
Atomic # 6 Polarization: -49.35 SS G_CDS: 6.26 Total: -43.09 kcal
Atomic # 7 Polarization: -82.78 SS G_CDS: -7.14 Total: -89.92 kcal
Atomic # 8 Polarization: -23.09 SS G_CDS: -1.64 Total: -24.74 kcal
Atomic # 14 Polarization: 48.56 SS G_CDS: 2.05 Total: 50.61 kcal
Total: -70.54 -0.04 -70.58 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000776171008.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.798 kcal
(2) G-P(sol) polarization free energy of solvation -70.542 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.743 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.583 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.784 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds