Wall clock time and date at job start Tue Mar 31 2020 19:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 H 1.09005 * 109.47444 * 199.99976 * 8 7 6 10 10 C 1.53000 * 109.47416 * 79.99933 * 8 7 6 11 11 N 1.46898 * 109.46996 * 319.99598 * 8 7 6 12 12 C 1.46955 * 110.99974 * 303.80189 * 11 8 7 13 13 C 1.53048 * 109.36462 * 176.81261 * 12 11 8 14 14 N 1.46964 * 109.36717 * 58.39795 * 13 12 11 15 15 C 1.46898 * 111.00197 * 176.81238 * 14 13 12 16 16 C 1.53004 * 109.47266 * 313.80307 * 15 14 13 17 17 H 1.09003 * 109.47150 * 59.99803 * 16 15 14 18 18 O 1.42901 * 109.46739 * 299.99953 * 16 15 14 19 19 C 1.50699 * 109.47234 * 179.97438 * 16 15 14 20 20 H 1.07999 * 120.00095 * 0.02562 * 19 16 15 21 21 C 1.37878 * 119.99705 * 179.97438 * 19 16 15 22 22 N 1.31515 * 120.00466 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 119.99854 * 179.97438 * 21 19 16 24 24 H 1.48502 * 109.46849 * 90.00017 * 23 21 19 25 25 H 1.48490 * 109.47308 * 209.99967 * 23 21 19 26 26 H 1.48503 * 109.47071 * 330.00571 * 23 21 19 27 27 C 1.46951 * 110.87852 * 300.68417 * 14 13 12 28 28 C 1.46955 * 111.00051 * 180.02562 * 11 8 7 29 29 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 30 30 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 31 31 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 33 33 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 35 35 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 36 36 H 1.09000 * 109.47146 * 180.02562 * 10 8 7 37 37 H 1.09003 * 109.46562 * 299.99685 * 10 8 7 38 38 H 1.08998 * 109.47338 * 59.99984 * 10 8 7 39 39 H 1.09002 * 109.48655 * 296.77317 * 12 11 8 40 40 H 1.08996 * 109.49078 * 56.84516 * 12 11 8 41 41 H 1.09004 * 109.49011 * 298.43234 * 13 12 11 42 42 H 1.09000 * 109.50915 * 178.38071 * 13 12 11 43 43 H 1.09006 * 109.47014 * 73.79682 * 15 14 13 44 44 H 1.08996 * 109.47564 * 193.79934 * 15 14 13 45 45 H 0.96702 * 114.00351 * 299.99564 * 18 16 15 46 46 H 0.96992 * 120.00253 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.48815 * 299.34860 * 27 14 13 48 48 H 1.09005 * 109.48814 * 179.28655 * 27 14 13 49 49 H 1.09004 * 109.48801 * 303.15610 * 28 11 8 50 50 H 1.09002 * 109.49046 * 63.20179 * 28 11 8 51 51 H 1.07997 * 120.02798 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 1 5.9756 1.6537 -0.3518 10 6 6.0566 2.8745 1.4213 11 7 5.9926 3.6847 -0.8888 12 6 5.4579 3.4992 -2.2450 13 6 5.8633 4.6894 -3.1176 14 7 7.3287 4.7985 -3.1427 15 6 7.7605 5.8850 -4.0320 16 6 6.9928 5.7988 -5.3527 17 1 5.9242 5.8913 -5.1584 18 8 7.2565 4.5400 -5.9756 19 6 7.4354 6.9138 -6.2648 20 1 8.1892 7.6137 -5.9356 21 6 6.8787 7.0397 -7.5198 22 7 5.9618 6.1866 -7.9213 23 14 7.4268 8.4223 -8.6502 24 1 8.5718 7.9618 -9.4762 25 1 6.3016 8.8118 -9.5374 26 1 7.8430 9.5921 -7.8356 27 6 7.8634 4.9839 -1.7865 28 6 7.4579 3.7933 -0.9144 29 6 3.4311 1.2848 0.0003 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2128 2.3203 0.0108 34 1 1.3339 4.5114 0.0034 35 1 3.7922 4.6381 0.0022 36 1 7.1450 2.9335 1.4213 37 1 5.6418 3.8190 1.7735 38 1 5.7361 2.0683 2.0812 39 1 5.8609 2.5811 -2.6724 40 1 4.3707 3.4339 -2.2015 41 1 5.4376 5.6043 -2.7053 42 1 5.4923 4.5405 -4.1316 43 1 7.5593 6.8452 -3.5568 44 1 8.8291 5.7926 -4.2262 45 1 8.1901 4.3892 -6.1779 46 1 5.5700 6.2755 -8.8040 47 1 7.4603 5.9021 -1.3591 48 1 8.9506 5.0493 -1.8300 49 1 7.8293 3.9425 0.0995 50 1 7.8833 2.8783 -1.3266 51 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809574208.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:36 Heat of formation + Delta-G solvation = -41.828237 kcal Electronic energy + Delta-G solvation = -29560.608914 eV Core-core repulsion = 25653.600377 eV Total energy + Delta-G solvation = -3907.008537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.46800 -39.30388 -37.77176 -36.26602 -34.60017 -32.11430 -31.96006 -30.86010 -30.66374 -29.19761 -28.15970 -27.47917 -26.00843 -24.12916 -23.06175 -22.76772 -22.58997 -20.67214 -20.09788 -19.21557 -17.87121 -17.11011 -16.52304 -16.15774 -15.93844 -15.56503 -15.13089 -14.75802 -14.67719 -14.54714 -14.39155 -14.09770 -13.91560 -13.68039 -13.57521 -13.41679 -12.94886 -12.80879 -12.60938 -12.44076 -12.17818 -12.08025 -11.76716 -11.52260 -11.37936 -11.20862 -11.08983 -10.96223 -10.90323 -10.85434 -10.79520 -10.70419 -10.33797 -10.27388 -10.01274 -8.94666 -8.85965 -8.53943 -8.26401 -8.24052 -8.02964 -7.62462 -5.99064 -4.16923 1.19587 1.39152 3.05650 3.28480 3.35499 3.38047 3.64146 3.96763 4.36005 4.52012 4.57803 4.65643 4.86186 4.88785 4.94064 5.09790 5.13317 5.16701 5.19585 5.28571 5.34864 5.38647 5.42451 5.46105 5.56813 5.63041 5.68340 5.74689 5.80216 5.88992 5.94257 5.98721 6.10252 6.17676 6.19653 6.20960 6.30292 6.38705 6.42988 6.54319 6.57147 6.58631 6.65661 6.87236 7.16010 7.19439 7.25023 7.62589 7.72379 7.81080 7.87899 8.22471 8.86539 9.46895 9.62994 11.05089 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.002632 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.157321 B =10636.408496 C =11864.431078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.210 4.210 5 C -0.084 4.084 6 C -0.126 4.126 7 C -0.037 4.037 8 C 0.120 3.880 9 H 0.049 0.951 10 C -0.140 4.140 11 N -0.531 5.531 12 C 0.059 3.941 13 C 0.058 3.942 14 N -0.530 5.530 15 C 0.031 3.969 16 C 0.230 3.770 17 H 0.058 0.942 18 O -0.556 6.556 19 C -0.573 4.573 20 H 0.054 0.946 21 C 0.080 3.920 22 N -0.859 5.859 23 Si 0.889 3.111 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.056 3.944 28 C 0.059 3.941 29 C -0.148 4.148 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.031 0.969 42 H 0.098 0.902 43 H 0.026 0.974 44 H 0.063 0.937 45 H 0.344 0.656 46 H 0.260 0.740 47 H 0.034 0.966 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.040 0.960 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.841 -9.446 20.121 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.229 4.229 5 C -0.102 4.102 6 C -0.145 4.145 7 C -0.037 4.037 8 C 0.012 3.988 9 H 0.067 0.933 10 C -0.198 4.198 11 N -0.257 5.257 12 C -0.069 4.069 13 C -0.070 4.070 14 N -0.255 5.255 15 C -0.096 4.096 16 C 0.172 3.828 17 H 0.075 0.925 18 O -0.358 6.358 19 C -0.612 4.612 20 H 0.073 0.927 21 C -0.126 4.126 22 N -0.495 5.495 23 Si 0.716 3.284 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.073 4.073 28 C -0.069 4.069 29 C -0.167 4.167 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.117 0.883 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.188 0.812 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.058 0.942 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.545 -9.754 20.043 23.533 hybrid contribution 0.561 1.099 -0.777 1.458 sum -6.985 -8.655 19.266 22.246 Atomic orbital electron populations 1.23029 0.78532 1.03773 1.01328 1.86054 1.21264 1.27115 1.88945 1.18910 0.92156 0.84075 0.97123 1.21209 0.99817 0.92513 1.09376 1.20981 0.94785 0.96880 0.97589 1.21013 0.93062 0.98911 1.01485 1.19528 0.94852 0.92211 0.97121 1.20505 0.90496 0.93504 0.94333 0.93288 1.21862 1.01126 1.02401 0.94381 1.62237 1.10155 1.43175 1.10101 1.22233 0.99564 0.98217 0.86876 1.22212 0.88254 0.95987 1.00523 1.62195 1.09752 1.45972 1.07604 1.23036 1.00552 0.90104 0.95935 1.19432 0.94965 0.82840 0.85540 0.92486 1.86534 1.28191 1.38725 1.82366 1.21651 1.24580 1.14167 1.00757 0.92741 1.25020 0.94269 0.95409 0.97945 1.70072 1.25698 1.34788 1.18905 0.86681 0.78359 0.82567 0.80800 1.20529 1.21148 1.19903 1.22128 0.99372 0.96280 0.89526 1.22188 0.87154 0.98302 0.99292 1.20227 0.91336 0.98052 1.07094 0.92613 0.88382 0.92793 0.85803 0.85826 0.84861 0.92000 0.91547 0.92222 0.94151 0.90468 0.95070 0.88348 0.95570 0.91844 0.81220 0.93018 0.94764 0.91002 0.90546 0.94154 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.53 10.50 -19.41 -0.20 -3.73 16 3 C 0.12 1.43 6.69 -39.22 -0.26 1.17 16 4 C -0.21 -2.22 9.04 -39.43 -0.36 -2.58 16 5 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 6 C -0.13 -1.49 8.11 -39.56 -0.32 -1.81 16 7 C -0.04 -0.43 3.73 -104.65 -0.39 -0.82 16 8 C 0.12 1.37 2.27 -68.87 -0.16 1.22 16 9 H 0.05 0.58 8.00 -51.93 -0.42 0.16 16 10 C -0.14 -1.32 8.94 37.16 0.33 -0.99 16 11 N -0.53 -7.07 3.91 -227.88 -0.89 -7.96 16 12 C 0.06 0.92 5.20 -3.77 -0.02 0.90 16 13 C 0.06 1.08 4.93 -3.76 -0.02 1.06 16 14 N -0.53 -9.82 4.73 -234.46 -1.11 -10.93 16 15 C 0.03 0.65 4.88 -3.82 -0.02 0.63 16 16 C 0.23 5.80 2.12 -27.88 -0.06 5.74 16 17 H 0.06 1.57 6.26 -51.93 -0.33 1.25 16 18 O -0.56 -14.42 12.40 -35.23 -0.44 -14.86 16 19 C -0.57 -15.74 8.76 -34.44 -0.30 -16.04 16 20 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 21 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 22 N -0.86 -25.40 12.84 55.43 0.71 -24.69 16 23 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.06 0.84 5.58 -3.77 -0.02 0.82 16 28 C 0.06 0.76 5.32 -3.77 -0.02 0.74 16 29 C -0.15 -1.76 9.61 -39.43 -0.38 -2.14 16 30 H 0.06 0.36 7.68 -51.93 -0.40 -0.04 16 31 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.05 0.31 7.65 -51.93 -0.40 -0.08 16 33 H 0.12 1.03 6.30 -52.49 -0.33 0.70 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 1.62 7.71 -52.48 -0.40 1.21 16 36 H 0.06 0.54 6.34 -51.93 -0.33 0.21 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.19 6.05 -51.93 -0.31 0.88 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 2.12 5.83 -51.93 -0.30 1.82 16 43 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.34 8.13 9.04 45.56 0.41 8.54 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.08 0.83 6.14 -51.93 -0.32 0.51 16 50 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.13 1.39 8.04 -52.49 -0.42 0.97 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -31.03 396.16 -10.21 -41.24 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -7.74 Total: 8.84 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.49 Total: -10.08 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -1.29 Total: -43.57 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.64 Total: -18.59 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.03 -10.21 -41.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574208.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.590 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds