Wall clock time and date at job start Tue Mar 31 2020 19:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 H 1.09005 * 109.47444 * 199.99976 * 8 7 6 10 10 C 1.53000 * 109.47416 * 79.99933 * 8 7 6 11 11 N 1.46898 * 109.46996 * 319.99598 * 8 7 6 12 12 C 1.46955 * 110.99974 * 303.80189 * 11 8 7 13 13 C 1.53048 * 109.36462 * 176.81261 * 12 11 8 14 14 N 1.46964 * 109.36717 * 58.39795 * 13 12 11 15 15 C 1.46898 * 111.00197 * 176.81238 * 14 13 12 16 16 C 1.53004 * 109.47266 * 313.80307 * 15 14 13 17 17 H 1.09003 * 109.47150 * 59.99803 * 16 15 14 18 18 O 1.42901 * 109.46739 * 299.99953 * 16 15 14 19 19 C 1.50699 * 109.47234 * 179.97438 * 16 15 14 20 20 H 1.07999 * 120.00095 * 0.02562 * 19 16 15 21 21 C 1.37878 * 119.99705 * 179.97438 * 19 16 15 22 22 N 1.31515 * 120.00466 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 119.99854 * 179.97438 * 21 19 16 24 24 H 1.48502 * 109.46849 * 90.00017 * 23 21 19 25 25 H 1.48490 * 109.47308 * 209.99967 * 23 21 19 26 26 H 1.48503 * 109.47071 * 330.00571 * 23 21 19 27 27 C 1.46951 * 110.87852 * 300.68417 * 14 13 12 28 28 C 1.46955 * 111.00051 * 180.02562 * 11 8 7 29 29 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 30 30 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 31 31 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 33 33 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 35 35 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 36 36 H 1.09000 * 109.47146 * 180.02562 * 10 8 7 37 37 H 1.09003 * 109.46562 * 299.99685 * 10 8 7 38 38 H 1.08998 * 109.47338 * 59.99984 * 10 8 7 39 39 H 1.09002 * 109.48655 * 296.77317 * 12 11 8 40 40 H 1.08996 * 109.49078 * 56.84516 * 12 11 8 41 41 H 1.09004 * 109.49011 * 298.43234 * 13 12 11 42 42 H 1.09000 * 109.50915 * 178.38071 * 13 12 11 43 43 H 1.09006 * 109.47014 * 73.79682 * 15 14 13 44 44 H 1.08996 * 109.47564 * 193.79934 * 15 14 13 45 45 H 0.96702 * 114.00351 * 299.99564 * 18 16 15 46 46 H 0.96992 * 120.00253 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.48815 * 299.34860 * 27 14 13 48 48 H 1.09005 * 109.48814 * 179.28655 * 27 14 13 49 49 H 1.09004 * 109.48801 * 303.15610 * 28 11 8 50 50 H 1.09002 * 109.49046 * 63.20179 * 28 11 8 51 51 H 1.07997 * 120.02798 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 1 5.9756 1.6537 -0.3518 10 6 6.0566 2.8745 1.4213 11 7 5.9926 3.6847 -0.8888 12 6 5.4579 3.4992 -2.2450 13 6 5.8633 4.6894 -3.1176 14 7 7.3287 4.7985 -3.1427 15 6 7.7605 5.8850 -4.0320 16 6 6.9928 5.7988 -5.3527 17 1 5.9242 5.8913 -5.1584 18 8 7.2565 4.5400 -5.9756 19 6 7.4354 6.9138 -6.2648 20 1 8.1892 7.6137 -5.9356 21 6 6.8787 7.0397 -7.5198 22 7 5.9618 6.1866 -7.9213 23 14 7.4268 8.4223 -8.6502 24 1 8.5718 7.9618 -9.4762 25 1 6.3016 8.8118 -9.5374 26 1 7.8430 9.5921 -7.8356 27 6 7.8634 4.9839 -1.7865 28 6 7.4579 3.7933 -0.9144 29 6 3.4311 1.2848 0.0003 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2128 2.3203 0.0108 34 1 1.3339 4.5114 0.0034 35 1 3.7922 4.6381 0.0022 36 1 7.1450 2.9335 1.4213 37 1 5.6418 3.8190 1.7735 38 1 5.7361 2.0683 2.0812 39 1 5.8609 2.5811 -2.6724 40 1 4.3707 3.4339 -2.2015 41 1 5.4376 5.6043 -2.7053 42 1 5.4923 4.5405 -4.1316 43 1 7.5593 6.8452 -3.5568 44 1 8.8291 5.7926 -4.2262 45 1 8.1901 4.3892 -6.1779 46 1 5.5700 6.2755 -8.8040 47 1 7.4603 5.9021 -1.3591 48 1 8.9506 5.0493 -1.8300 49 1 7.8293 3.9425 0.0995 50 1 7.8833 2.8783 -1.3266 51 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809574208.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:35 Heat of formation + Delta-G solvation = -64.030544 kcal Electronic energy + Delta-G solvation = -29561.571679 eV Core-core repulsion = 25653.600377 eV Total energy + Delta-G solvation = -3907.971301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.35689 -40.42538 -38.90694 -37.70676 -36.11352 -34.21826 -33.13245 -32.09859 -31.54700 -30.39682 -29.60454 -28.11031 -27.58581 -25.64038 -24.42077 -23.87199 -23.48624 -22.10768 -21.25757 -20.57039 -19.13694 -18.68639 -17.51808 -17.04669 -16.70029 -16.68109 -16.61896 -16.38293 -16.10751 -16.00665 -15.70116 -15.56626 -15.33136 -15.02279 -14.54111 -14.38806 -14.34301 -14.03872 -13.84026 -13.39284 -13.16182 -13.08079 -12.95984 -12.88504 -12.80617 -12.64359 -12.52899 -12.31507 -12.28420 -12.19082 -12.06218 -11.97709 -11.78884 -11.55714 -11.45486 -10.88350 -10.66506 -10.06136 -9.79069 -9.36838 -9.12721 -9.10334 -8.12943 -6.38614 0.34076 0.51957 1.40607 1.40752 1.51739 2.34362 2.38607 2.74491 2.93688 3.06965 3.13707 3.66203 3.89013 3.93880 4.11077 4.14331 4.18503 4.23220 4.26221 4.31429 4.34799 4.38957 4.44068 4.46974 4.53583 4.55480 4.57415 4.63323 4.67769 4.72165 4.73442 4.81729 4.87653 4.94607 4.98804 5.00767 5.08034 5.12481 5.15692 5.33673 5.35412 5.52356 5.61238 5.64368 5.76542 5.81498 5.97093 6.02902 6.12953 6.26192 6.32899 6.46800 6.74352 7.35069 7.60472 8.91414 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.002632 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.157321 B =10636.408496 C =11864.431078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.113 3.887 4 C -0.212 4.212 5 C -0.088 4.088 6 C -0.139 4.139 7 C -0.043 4.043 8 C 0.121 3.879 9 H 0.047 0.953 10 C -0.134 4.134 11 N -0.530 5.530 12 C 0.075 3.925 13 C 0.067 3.933 14 N -0.537 5.537 15 C 0.048 3.952 16 C 0.232 3.768 17 H 0.025 0.975 18 O -0.571 6.571 19 C -0.588 4.588 20 H 0.059 0.941 21 C 0.026 3.974 22 N -0.899 5.899 23 Si 0.960 3.040 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.265 1.265 27 C 0.055 3.945 28 C 0.063 3.937 29 C -0.163 4.163 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.127 0.873 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.026 0.974 40 H 0.077 0.923 41 H 0.024 0.976 42 H 0.058 0.942 43 H 0.024 0.976 44 H 0.071 0.929 45 H 0.353 0.647 46 H 0.261 0.739 47 H 0.033 0.967 48 H 0.087 0.913 49 H 0.108 0.892 50 H 0.036 0.964 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 -9.193 21.646 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.067 3.933 4 C -0.231 4.231 5 C -0.106 4.106 6 C -0.157 4.157 7 C -0.043 4.043 8 C 0.013 3.987 9 H 0.065 0.935 10 C -0.191 4.191 11 N -0.255 5.255 12 C -0.053 4.053 13 C -0.061 4.061 14 N -0.262 5.262 15 C -0.080 4.080 16 C 0.174 3.826 17 H 0.042 0.958 18 O -0.374 6.374 19 C -0.626 4.626 20 H 0.077 0.923 21 C -0.177 4.177 22 N -0.536 5.536 23 Si 0.784 3.216 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.190 1.190 27 C -0.073 4.073 28 C -0.065 4.065 29 C -0.182 4.182 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.145 0.855 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.198 0.802 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.106 0.894 49 H 0.126 0.874 50 H 0.054 0.946 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.078 -9.505 21.595 24.633 hybrid contribution 0.347 0.957 -1.212 1.583 sum -6.731 -8.548 20.383 23.105 Atomic orbital electron populations 1.23317 0.76555 1.05469 1.02150 1.86031 1.23394 1.26946 1.88852 1.19097 0.92355 0.84775 0.97026 1.21466 1.00991 0.92000 1.08616 1.21243 0.94639 0.97830 0.96909 1.21048 0.93705 0.98608 1.02340 1.19581 0.95069 0.92288 0.97403 1.20572 0.90448 0.92613 0.95019 0.93490 1.21827 1.01747 1.02698 0.92829 1.62230 1.10478 1.44184 1.08607 1.21953 0.99530 0.95964 0.87882 1.22001 0.88370 0.96896 0.98852 1.62174 1.09630 1.44878 1.09543 1.22676 1.00100 0.90855 0.94330 1.19269 0.93780 0.82086 0.87431 0.95751 1.86490 1.29047 1.39022 1.82820 1.22048 1.24448 1.14726 1.01390 0.92323 1.25892 0.94215 0.97879 0.99678 1.70217 1.27100 1.36873 1.19400 0.85558 0.77946 0.79459 0.78591 1.19764 1.20936 1.18956 1.22256 1.00167 0.97291 0.87606 1.22224 0.86780 0.97023 1.00454 1.20361 0.91890 0.98203 1.07744 0.92172 0.86404 0.91499 0.83628 0.84035 0.85471 0.90821 0.91752 0.91137 0.95591 0.90483 0.95766 0.92317 0.95820 0.91062 0.80244 0.93034 0.94867 0.89426 0.87402 0.94583 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.17 10.50 -92.38 -0.97 -8.14 16 3 C 0.11 2.56 6.69 22.51 0.15 2.71 16 4 C -0.21 -4.23 9.04 22.37 0.20 -4.03 16 5 C -0.09 -1.82 10.04 22.25 0.22 -1.59 16 6 C -0.14 -3.20 8.11 22.28 0.18 -3.02 16 7 C -0.04 -0.99 3.73 -19.88 -0.07 -1.07 16 8 C 0.12 2.64 2.27 44.17 0.10 2.74 16 9 H 0.05 1.06 8.00 -2.38 -0.02 1.04 16 10 C -0.13 -2.22 8.94 71.98 0.64 -1.58 16 11 N -0.53 -13.60 3.91 -874.88 -3.42 -17.02 16 12 C 0.08 2.39 5.20 86.31 0.45 2.84 16 13 C 0.07 2.57 4.93 86.31 0.43 3.00 16 14 N -0.54 -19.94 4.73 -895.69 -4.23 -24.18 16 15 C 0.05 2.03 4.88 86.30 0.42 2.45 16 16 C 0.23 12.05 2.12 29.85 0.06 12.12 16 17 H 0.02 1.43 6.26 -2.39 -0.01 1.42 16 18 O -0.57 -30.49 12.40 -148.98 -1.85 -32.34 16 19 C -0.59 -32.63 8.76 25.60 0.22 -32.41 16 20 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 21 C 0.03 1.46 5.40 84.65 0.46 1.91 16 22 N -0.90 -54.35 12.84 21.45 0.28 -54.08 16 23 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C 0.05 1.58 5.58 86.31 0.48 2.06 16 28 C 0.06 1.51 5.32 86.31 0.46 1.97 16 29 C -0.16 -3.82 9.61 22.37 0.21 -3.61 16 30 H 0.06 0.69 7.68 -2.39 -0.02 0.67 16 31 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.07 0.65 7.65 -2.39 -0.02 0.63 16 33 H 0.15 2.15 6.30 -2.91 -0.02 2.13 16 34 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.13 3.05 7.71 -2.91 -0.02 3.03 16 36 H 0.07 1.05 6.34 -2.39 -0.02 1.03 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 2.45 6.05 -2.39 -0.01 2.43 16 41 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.06 2.71 5.83 -2.39 -0.01 2.69 16 43 H 0.02 1.00 8.08 -2.38 -0.02 0.98 16 44 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 45 H 0.35 17.00 9.04 -74.06 -0.67 16.33 16 46 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 47 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.09 2.26 8.14 -2.38 -0.02 2.25 16 49 H 0.11 1.97 6.14 -2.39 -0.01 1.96 16 50 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.13 2.83 8.04 -2.91 -0.02 2.81 16 Total: -1.00 -67.71 396.16 -2.19 -69.90 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.25 Total: 34.31 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 5.74 Total: -14.16 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -7.38 Total: -95.28 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -2.82 Total: -40.48 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.71 -2.19 -69.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574208.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.866 kcal (2) G-P(sol) polarization free energy of solvation -67.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds