Wall clock time and date at job start Tue Mar 31 2020 19:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35998 * 116.99791 * 2 1 4 4 C 1.38559 * 120.07546 * 359.97438 * 3 2 1 5 5 C 1.38246 * 119.99964 * 179.97438 * 4 3 2 6 6 C 1.38244 * 120.14477 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.92531 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47139 * 89.99930 * 7 6 5 9 9 C 1.46953 * 110.96768 * 65.49641 * 8 7 6 10 10 C 1.53238 * 109.30823 * 187.06399 * 9 8 7 11 11 H 1.08993 * 109.63554 * 66.27688 * 10 9 8 12 12 C 1.53008 * 109.62843 * 186.66370 * 10 9 8 13 13 N 1.47081 * 108.68462 * 306.46413 * 10 9 8 14 14 C 1.36927 * 120.88670 * 231.11157 * 13 10 9 15 15 H 1.08001 * 119.99863 * 26.34766 * 14 13 10 16 16 C 1.38812 * 120.00403 * 206.34917 * 14 13 10 17 17 N 1.31620 * 119.99696 * 17.39251 * 16 14 13 18 18 Si 1.86804 * 120.00350 * 197.40036 * 16 14 13 19 19 H 1.48498 * 109.47374 * 59.99363 * 18 16 14 20 20 H 1.48501 * 109.47295 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46584 * 299.99621 * 18 16 14 22 22 C 1.47089 * 118.23264 * 51.09205 * 13 10 9 23 23 H 1.08993 * 109.62696 * 188.91110 * 22 13 10 24 24 C 1.53001 * 109.62902 * 68.52470 * 22 13 10 25 25 C 1.46906 * 110.99797 * 189.99936 * 8 7 6 26 26 C 1.38241 * 120.15215 * 0.23381 * 6 5 4 27 27 C 1.38566 * 119.99333 * 359.49560 * 26 6 5 28 28 O 1.36003 * 120.07179 * 180.25456 * 27 26 6 29 29 C 1.42895 * 117.00044 * 0.27247 * 28 27 26 30 30 H 1.08997 * 109.46940 * 60.00174 * 1 2 3 31 31 H 1.08996 * 109.47217 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47001 * 300.00305 * 1 2 3 33 33 H 1.08004 * 120.00247 * 359.95483 * 4 3 2 34 34 H 1.08003 * 119.92163 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47182 * 329.99938 * 7 6 5 36 36 H 1.09005 * 109.47222 * 209.99869 * 7 6 5 37 37 H 1.08998 * 109.34457 * 67.20968 * 9 8 7 38 38 H 1.08997 * 109.67404 * 307.11029 * 9 8 7 39 39 H 1.08999 * 109.47278 * 179.61019 * 12 10 9 40 40 H 1.08998 * 109.47102 * 59.61053 * 12 10 9 41 41 H 1.09007 * 109.46697 * 299.61397 * 12 10 9 42 42 H 0.97010 * 119.99908 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.47011 * 59.99659 * 24 22 13 44 44 H 1.08999 * 109.46841 * 179.97438 * 24 22 13 45 45 H 1.09001 * 109.46740 * 300.00288 * 24 22 13 46 46 H 1.08995 * 109.49146 * 52.78812 * 25 8 7 47 47 H 1.08997 * 109.51726 * 292.71901 * 25 8 7 48 48 H 1.08003 * 120.00601 * 179.74521 * 26 6 5 49 49 H 1.09000 * 109.46801 * 299.99919 * 29 28 27 50 50 H 1.09000 * 109.47002 * 59.99753 * 29 28 27 51 51 H 1.08997 * 109.46944 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9224 3.6058 0.0000 6 6 3.3029 3.6798 0.0005 7 6 3.9837 5.0244 0.0005 8 7 4.2043 5.4615 1.3855 9 6 5.1548 4.5753 2.0716 10 6 5.2228 4.9560 3.5543 11 1 4.2659 4.7443 4.0311 12 6 6.3284 4.1516 4.2413 13 7 5.5197 6.3927 3.6588 14 6 6.5414 6.8436 4.4510 15 1 7.3834 6.2016 4.6638 16 6 6.4951 8.1258 4.9808 17 7 5.3540 8.7806 5.0204 18 14 8.0521 8.9221 5.6373 19 1 9.0555 9.0205 4.5470 20 1 7.7370 10.2821 6.1436 21 1 8.6018 8.0969 6.7429 22 6 4.6901 7.3324 2.8891 23 1 5.1236 8.3311 2.9415 24 6 3.2726 7.3566 3.4643 25 6 4.6463 6.8617 1.4315 26 6 4.0603 2.5234 -0.0043 27 6 3.4359 1.2864 0.0008 28 8 4.1796 0.1477 0.0012 29 6 5.6003 0.3006 0.0023 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2146 2.3197 -0.0017 34 1 1.3341 4.5115 -0.0008 35 1 3.3540 5.7504 -0.5137 36 1 4.9420 4.9464 -0.5129 37 1 6.1414 4.6865 1.6218 38 1 4.8259 3.5405 1.9766 39 1 6.3792 4.4294 5.2941 40 1 7.2841 4.3653 3.7627 41 1 6.1094 3.0872 4.1564 42 1 5.3216 9.6768 5.3903 43 1 3.3086 7.6750 4.5061 44 1 2.6603 8.0539 2.8925 45 1 2.8391 6.3582 3.4044 46 1 3.9480 7.4822 0.8698 47 1 5.6406 6.9443 0.9925 48 1 5.1386 2.5840 -0.0081 49 1 5.9072 0.8505 -0.8874 50 1 5.9059 0.8504 0.8925 51 1 6.0715 -0.6822 0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895489732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:16 Heat of formation + Delta-G solvation = -8.351324 kcal Electronic energy + Delta-G solvation = -30494.628041 eV Core-core repulsion = 26589.071172 eV Total energy + Delta-G solvation = -3905.556869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.62839 -38.70416 -38.43836 -37.02406 -34.59977 -32.52273 -31.67029 -30.36554 -30.21419 -28.13063 -27.45506 -27.33489 -26.13572 -25.41045 -23.89666 -22.48165 -22.03173 -20.85379 -20.62080 -18.53590 -18.40881 -17.07083 -16.72889 -16.26312 -16.08695 -15.35015 -15.28824 -14.79882 -14.69069 -14.56167 -14.46871 -14.41225 -13.84382 -13.38060 -13.26541 -13.16394 -12.77462 -12.59633 -12.33718 -12.02163 -11.89511 -11.69181 -11.54643 -11.31473 -11.26569 -11.14284 -11.02065 -10.92356 -10.87427 -10.75559 -10.53552 -10.48803 -10.40468 -9.99004 -9.86980 -9.40932 -9.17840 -8.69950 -8.40918 -7.80387 -7.67318 -6.58116 -5.71859 -3.12135 1.27866 1.45812 3.19732 3.23014 3.40022 3.46317 3.47134 3.67637 4.51142 4.58573 4.72780 4.82734 4.90612 5.01396 5.03130 5.10170 5.11830 5.25742 5.31395 5.35363 5.41400 5.42624 5.43966 5.51845 5.68126 5.81088 5.87398 5.99106 6.09208 6.17561 6.18050 6.26802 6.28234 6.34400 6.38844 6.46618 6.65640 6.67375 6.70468 6.89757 6.98583 7.00109 7.08098 7.14842 7.28943 7.53588 7.58067 7.64249 7.78114 7.90359 8.00552 8.50596 9.29187 9.91909 10.50287 11.35585 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018829 B = 0.003082 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.717129 B = 9083.688164 C = 9736.606287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.091 3.909 4 C -0.173 4.173 5 C -0.094 4.094 6 C -0.062 4.062 7 C 0.093 3.907 8 N -0.523 5.523 9 C 0.048 3.952 10 C 0.172 3.828 11 H 0.032 0.968 12 C -0.138 4.138 13 N -0.585 5.585 14 C -0.248 4.248 15 H 0.069 0.931 16 C 0.001 3.999 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.285 1.285 22 C 0.198 3.802 23 H 0.095 0.905 24 C -0.135 4.135 25 C 0.042 3.958 26 C -0.164 4.164 27 C 0.097 3.903 28 O -0.309 6.309 29 C 0.026 3.974 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.024 0.976 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.037 0.963 42 H 0.252 0.748 43 H 0.071 0.929 44 H 0.019 0.981 45 H 0.033 0.967 46 H 0.060 0.940 47 H 0.023 0.977 48 H 0.132 0.868 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.689 -13.800 -12.644 19.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.046 3.954 4 C -0.191 4.191 5 C -0.113 4.113 6 C -0.062 4.062 7 C -0.035 4.035 8 N -0.247 5.247 9 C -0.082 4.082 10 C 0.065 3.935 11 H 0.049 0.951 12 C -0.196 4.196 13 N -0.308 5.308 14 C -0.377 4.377 15 H 0.087 0.913 16 C -0.197 4.197 17 N -0.543 5.543 18 Si 0.728 3.272 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.211 1.211 22 C 0.092 3.908 23 H 0.113 0.887 24 C -0.194 4.194 25 C -0.087 4.087 26 C -0.183 4.183 27 C 0.051 3.949 28 O -0.223 6.223 29 C -0.069 4.069 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.039 0.961 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.041 0.959 48 H 0.149 0.851 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.112 -14.035 -12.305 19.975 hybrid contribution 1.494 0.876 -0.054 1.733 sum -5.618 -13.159 -12.359 18.907 Atomic orbital electron populations 1.23025 0.78891 1.03658 1.01195 1.86146 1.20753 1.26166 1.89329 1.18201 0.89068 0.85092 1.03044 1.21024 0.99725 0.91511 1.06872 1.20724 0.93845 0.96936 0.99829 1.19523 0.93422 0.94287 0.99008 1.21030 0.98186 0.92822 0.91477 1.61920 1.47465 1.03146 1.12154 1.22733 0.92551 0.95705 0.97171 1.20437 0.95841 0.86185 0.91006 0.95053 1.21808 0.98936 0.97079 1.01745 1.44280 1.36256 0.99165 1.51109 1.19149 0.96775 0.98275 1.23543 0.91298 1.24976 0.96282 0.99396 0.99045 1.70012 1.22700 1.12901 1.48729 0.86444 0.83461 0.78620 0.78663 1.21343 1.21762 1.21102 1.20402 0.91177 0.94659 0.84609 0.88711 1.21949 0.96733 0.98287 1.02383 1.22875 0.96852 0.87452 1.01489 1.20978 1.00179 0.90678 1.06449 1.18169 0.88172 0.85937 1.02576 1.86139 1.18553 1.28366 1.89254 1.23051 0.78776 1.03643 1.01411 0.92893 0.88489 0.92711 0.84985 0.85425 0.90304 0.94840 0.95808 0.91838 0.91826 0.93038 0.94370 0.93799 0.90968 0.96145 0.94781 0.92149 0.95887 0.85063 0.92898 0.92485 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.02 10.28 -34.23 -0.35 -4.37 16 3 C 0.09 1.24 6.70 -39.12 -0.26 0.98 16 4 C -0.17 -2.08 9.04 -39.46 -0.36 -2.44 16 5 C -0.09 -1.21 9.69 -39.58 -0.38 -1.59 16 6 C -0.06 -0.85 4.88 -104.62 -0.51 -1.36 16 7 C 0.09 1.33 5.12 -4.97 -0.03 1.31 16 8 N -0.52 -9.20 4.10 -235.71 -0.97 -10.17 16 9 C 0.05 0.87 4.64 -3.67 -0.02 0.85 16 10 C 0.17 3.64 3.25 -67.49 -0.22 3.42 16 11 H 0.03 0.73 7.64 -51.93 -0.40 0.33 16 12 C -0.14 -2.63 7.93 37.16 0.29 -2.33 16 13 N -0.58 -14.25 2.74 -157.00 -0.43 -14.68 16 14 C -0.25 -6.57 8.72 -15.06 -0.13 -6.70 16 15 H 0.07 1.79 6.16 -52.49 -0.32 1.47 16 16 C 0.00 0.03 4.93 -17.43 -0.09 -0.05 16 17 N -0.90 -25.12 9.80 55.49 0.54 -24.57 16 18 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.20 4.59 2.36 -67.49 -0.16 4.44 16 23 H 0.10 2.49 6.10 -51.93 -0.32 2.18 16 24 C -0.13 -3.06 8.96 37.16 0.33 -2.72 16 25 C 0.04 0.81 5.02 -3.70 -0.02 0.79 16 26 C -0.16 -2.19 6.85 -39.46 -0.27 -2.46 16 27 C 0.10 1.36 6.70 -39.12 -0.26 1.10 16 28 O -0.31 -4.21 10.28 -34.25 -0.35 -4.56 16 29 C 0.03 0.26 9.81 101.05 0.99 1.25 16 30 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 33 H 0.13 1.24 6.30 -52.48 -0.33 0.91 16 34 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 35 H 0.08 1.04 7.91 -51.93 -0.41 0.63 16 36 H 0.03 0.47 8.07 -51.93 -0.42 0.05 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.08 5.69 -51.93 -0.30 0.78 16 39 H 0.06 1.30 7.54 -51.93 -0.39 0.91 16 40 H 0.05 0.98 7.58 -51.93 -0.39 0.59 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.03 0.75 7.08 -51.93 -0.37 0.39 16 46 H 0.06 1.06 7.99 -51.93 -0.41 0.64 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.13 1.62 6.19 -52.48 -0.32 1.29 16 49 H 0.05 0.45 7.65 -51.93 -0.40 0.06 16 50 H 0.06 0.54 7.68 -51.93 -0.40 0.15 16 51 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -30.37 389.53 -9.24 -39.61 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.43 Total: 0.74 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -0.09 Total: -4.30 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.85 Total: -49.42 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.70 Total: -8.93 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.37 -9.24 -39.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895489732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.257 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds