Wall clock time and date at job start Tue Mar 31 2020 19:07:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35994 * 117.00077 * 2 1
4 4 C 1.38568 * 120.07237 * 359.97438 * 3 2 1
5 5 C 1.38249 * 119.99925 * 180.02562 * 4 3 2
6 6 C 1.38256 * 120.14356 * 359.75145 * 5 4 3
7 7 C 1.38242 * 120.14817 * 0.50954 * 6 5 4
8 8 C 1.50699 * 120.00160 * 179.76764 * 7 6 5
9 9 N 1.46890 * 109.47161 * 259.72255 * 8 7 6
10 10 C 1.46897 * 111.00438 * 170.00154 * 9 8 7
11 11 C 1.53230 * 109.34432 * 187.25334 * 10 9 8
12 12 H 1.09008 * 109.63243 * 65.87535 * 11 10 9
13 13 C 1.53006 * 109.63197 * 186.45640 * 11 10 9
14 14 N 1.47082 * 108.51993 * 306.16665 * 11 10 9
15 15 C 1.36940 * 120.87880 * 231.16226 * 14 11 10
16 16 H 1.07998 * 119.99655 * 126.63301 * 15 14 11
17 17 C 1.38810 * 120.00271 * 306.62865 * 15 14 11
18 18 N 1.31623 * 119.99784 * 338.07936 * 17 15 14
19 19 Si 1.86796 * 120.00094 * 158.08229 * 17 15 14
20 20 H 1.48497 * 109.47421 * 90.00187 * 19 17 15
21 21 H 1.48504 * 109.47215 * 209.99990 * 19 17 15
22 22 H 1.48501 * 109.47310 * 329.99906 * 19 17 15
23 23 C 1.47076 * 118.23695 * 51.18691 * 14 11 10
24 24 H 1.08998 * 109.78871 * 68.61813 * 23 14 11
25 25 C 1.53002 * 109.62666 * 189.10495 * 23 14 11
26 26 C 1.46899 * 110.99915 * 294.29923 * 9 8 7
27 27 C 1.38571 * 119.99812 * 359.48529 * 7 6 5
28 28 O 1.35986 * 120.07207 * 180.23447 * 27 7 6
29 29 C 1.42902 * 117.00210 * 90.00311 * 28 27 7
30 30 H 1.08992 * 109.47217 * 59.99567 * 1 2 3
31 31 H 1.09000 * 109.47354 * 180.02562 * 1 2 3
32 32 H 1.09009 * 109.46714 * 299.99772 * 1 2 3
33 33 H 1.08003 * 120.00194 * 0.04555 * 4 3 2
34 34 H 1.07993 * 119.92437 * 179.97438 * 5 4 3
35 35 H 1.07996 * 119.92415 * 180.24941 * 6 5 4
36 36 H 1.08999 * 109.46950 * 139.72109 * 8 7 6
37 37 H 1.08995 * 109.46792 * 19.72354 * 8 7 6
38 38 H 1.09010 * 109.48851 * 307.21293 * 10 9 8
39 39 H 1.09001 * 109.49208 * 67.28561 * 10 9 8
40 40 H 1.09004 * 109.47069 * 67.77295 * 13 11 10
41 41 H 1.08999 * 109.47415 * 187.77127 * 13 11 10
42 42 H 1.09002 * 109.46910 * 307.77511 * 13 11 10
43 43 H 0.96998 * 119.99814 * 185.05357 * 18 17 15
44 44 H 1.08997 * 109.47038 * 179.02444 * 25 23 14
45 45 H 1.09000 * 109.46848 * 299.02827 * 25 23 14
46 46 H 1.09001 * 109.47236 * 59.02972 * 25 23 14
47 47 H 1.09005 * 109.49706 * 292.70785 * 26 9 8
48 48 H 1.09005 * 109.49603 * 52.79002 * 26 9 8
49 49 H 1.08997 * 109.47241 * 179.97438 * 29 28 27
50 50 H 1.08997 * 109.47037 * 300.00344 * 29 28 27
51 51 H 1.08999 * 109.46994 * 59.99873 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2117 0.0000
4 6 1.2932 2.3748 -0.0005
5 6 1.9225 3.6058 -0.0011
6 6 3.3030 3.6798 0.0041
7 6 4.0604 2.5233 -0.0008
8 6 5.5650 2.6079 -0.0004
9 7 6.0677 2.3945 -1.3640
10 6 7.5016 2.7018 -1.4506
11 6 7.9457 2.6428 -2.9160
12 1 7.4595 3.4400 -3.4784
13 6 9.4651 2.8026 -2.9995
14 7 7.5549 1.3377 -3.4704
15 6 8.4643 0.5525 -4.1274
16 1 8.6117 -0.4731 -3.8229
17 6 9.1965 1.0747 -5.1848
18 7 8.7514 2.1279 -5.8367
19 14 10.8133 0.2825 -5.6825
20 1 10.5575 -0.7660 -6.7024
21 1 11.7165 1.3155 -6.2504
22 1 11.4513 -0.3316 -4.4904
23 6 6.1614 0.8988 -3.3008
24 1 5.5015 1.5256 -3.9005
25 6 6.0250 -0.5601 -3.7414
26 6 5.7876 1.0265 -1.8202
27 6 3.4360 1.2863 -0.0001
28 8 4.1795 0.1477 -0.0001
29 6 4.5348 -0.3952 1.2731
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3633 0.5139 0.8901
33 1 0.2146 2.3197 -0.0002
34 1 1.3343 4.5115 -0.0019
35 1 3.7909 4.6433 0.0078
36 1 5.9717 1.8427 0.6608
37 1 5.8734 3.5927 0.3506
38 1 7.6838 3.7012 -1.0553
39 1 8.0657 1.9721 -0.8698
40 1 9.9469 1.9277 -2.5630
41 1 9.7635 2.8987 -4.0434
42 1 9.7672 3.6951 -2.4515
43 1 9.2243 2.4486 -6.6206
44 1 4.9954 -0.8880 -3.5985
45 1 6.2915 -0.6479 -4.7947
46 1 6.6909 -1.1836 -3.1449
47 1 6.3756 0.3200 -1.2343
48 1 4.7267 0.8107 -1.6931
49 1 5.1252 -1.3002 1.1303
50 1 5.1200 0.3368 1.8297
51 1 3.6297 -0.6364 1.8306
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000895490771.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:07:38
Heat of formation + Delta-G solvation = -1.547139 kcal
Electronic energy + Delta-G solvation = -31167.997666 eV
Core-core repulsion = 27262.735848 eV
Total energy + Delta-G solvation = -3905.261818 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-40.69941 -38.72234 -37.73438 -36.93636 -34.75106 -32.55837 -31.75689 -30.40847
-30.11536 -27.63097 -27.53497 -26.94864 -25.90767 -25.58236 -24.18636 -22.29561
-21.99052 -20.63166 -20.04790 -18.94462 -18.02122 -17.20235 -16.73269 -16.31963
-15.99605 -15.46688 -14.96237 -14.87236 -14.62707 -14.51592 -14.29356 -14.12052
-13.96114 -13.39623 -13.32241 -12.87403 -12.68428 -12.46507 -12.23868 -11.86986
-11.85723 -11.71833 -11.52404 -11.41001 -11.28000 -11.15039 -10.95297 -10.77997
-10.68946 -10.46580 -10.35927 -10.27403 -10.00387 -9.82624 -9.63595 -9.56376
-9.28834 -8.70331 -8.14965 -8.05689 -7.62198 -6.16015 -5.61892 -3.36834
1.14949 1.36673 3.12490 3.37136 3.45578 3.46321 3.49362 3.93291
4.51599 4.65875 4.73446 4.81162 4.93363 4.96898 5.11166 5.25416
5.28517 5.30192 5.33735 5.35771 5.42377 5.50894 5.57404 5.64727
5.68759 5.91157 6.07240 6.11973 6.16269 6.30226 6.36022 6.39306
6.48826 6.56357 6.57983 6.61750 6.65520 6.79011 6.82225 6.83662
6.91868 7.08362 7.13251 7.34311 7.41097 7.65551 7.67452 7.68350
7.83135 7.90501 8.01121 8.76363 9.35570 9.89567 10.70685 11.30056
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.018740 B = 0.003448 C = 0.003247
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1493.789187 B = 8118.626335 C = 8621.241708
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.307 6.307
3 C 0.107 3.893
4 C -0.204 4.204
5 C -0.087 4.087
6 C -0.127 4.127
7 C -0.047 4.047
8 C 0.095 3.905
9 N -0.527 5.527
10 C 0.045 3.955
11 C 0.200 3.800
12 H 0.034 0.966
13 C -0.139 4.139
14 N -0.578 5.578
15 C -0.264 4.264
16 H 0.049 0.951
17 C 0.039 3.961
18 N -0.875 5.875
19 Si 0.879 3.121
20 H -0.284 1.284
21 H -0.288 1.288
22 H -0.275 1.275
23 C 0.172 3.828
24 H 0.026 0.974
25 C -0.126 4.126
26 C 0.053 3.947
27 C 0.071 3.929
28 O -0.311 6.311
29 C 0.033 3.967
30 H 0.055 0.945
31 H 0.098 0.902
32 H 0.052 0.948
33 H 0.128 0.872
34 H 0.126 0.874
35 H 0.129 0.871
36 H 0.037 0.963
37 H 0.077 0.923
38 H 0.056 0.944
39 H 0.025 0.975
40 H 0.048 0.952
41 H 0.083 0.917
42 H 0.022 0.978
43 H 0.254 0.746
44 H 0.034 0.966
45 H 0.062 0.938
46 H 0.046 0.954
47 H 0.025 0.975
48 H 0.082 0.918
49 H 0.091 0.909
50 H 0.041 0.959
51 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.449 0.646 15.457 21.168
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.220 6.220
3 C 0.061 3.939
4 C -0.223 4.223
5 C -0.105 4.105
6 C -0.146 4.146
7 C -0.048 4.048
8 C -0.032 4.032
9 N -0.250 5.250
10 C -0.084 4.084
11 C 0.093 3.907
12 H 0.052 0.948
13 C -0.197 4.197
14 N -0.303 5.303
15 C -0.394 4.394
16 H 0.066 0.934
17 C -0.163 4.163
18 N -0.515 5.515
19 Si 0.707 3.293
20 H -0.211 1.211
21 H -0.214 1.214
22 H -0.200 1.200
23 C 0.066 3.934
24 H 0.044 0.956
25 C -0.184 4.184
26 C -0.076 4.076
27 C 0.026 3.974
28 O -0.228 6.228
29 C -0.062 4.062
30 H 0.074 0.926
31 H 0.117 0.883
32 H 0.070 0.930
33 H 0.146 0.854
34 H 0.144 0.856
35 H 0.147 0.853
36 H 0.055 0.945
37 H 0.096 0.904
38 H 0.074 0.926
39 H 0.043 0.957
40 H 0.067 0.933
41 H 0.101 0.899
42 H 0.041 0.959
43 H 0.064 0.936
44 H 0.053 0.947
45 H 0.081 0.919
46 H 0.065 0.935
47 H 0.043 0.957
48 H 0.100 0.900
49 H 0.109 0.891
50 H 0.059 0.941
51 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -14.426 0.797 14.869 20.732
hybrid contribution 0.889 -0.638 0.369 1.155
sum -13.537 0.159 15.238 20.384
Atomic orbital electron populations
1.23051 0.78850 1.03809 1.01146 1.86169 1.20877 1.26342 1.88653
1.19393 0.91550 0.84806 0.98134 1.21091 0.99783 0.92031 1.09412
1.20918 0.94556 0.96883 0.98126 1.20876 0.93342 0.97860 1.02553
1.20006 0.96389 0.91390 0.97005 1.20956 0.89408 1.00926 0.91948
1.61973 1.16533 1.27283 1.19250 1.22860 0.86288 0.98328 1.00973
1.20263 0.93359 0.89123 0.87931 0.94817 1.21917 0.96083 0.98041
1.03678 1.44031 1.04115 1.18259 1.63932 1.18582 1.15056 0.95480
1.10238 0.93360 1.25545 0.99036 0.96690 0.95054 1.70087 1.38349
1.25899 1.17175 0.86710 0.85036 0.78925 0.78591 1.21103 1.21416
1.20037 1.20563 0.87849 0.93716 0.91261 0.95618 1.21645 0.98293
0.96358 1.02102 1.22913 1.00499 0.86502 0.97655 1.17755 0.86140
0.86774 1.06692 1.86388 1.69825 1.38644 1.27924 1.22947 0.99373
0.98550 0.85314 0.92615 0.88346 0.92956 0.85390 0.85634 0.85345
0.94529 0.90425 0.92557 0.95677 0.93320 0.89873 0.95934 0.93590
0.94698 0.91943 0.93465 0.95678 0.90017 0.89061 0.94073 0.93933
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.22 9.81 101.05 0.99 1.21 16
2 O -0.31 -3.98 10.28 -34.22 -0.35 -4.34 16
3 C 0.11 1.46 6.70 -39.12 -0.26 1.20 16
4 C -0.20 -2.32 9.04 -39.46 -0.36 -2.68 16
5 C -0.09 -0.96 10.04 -39.57 -0.40 -1.35 16
6 C -0.13 -1.61 9.66 -39.57 -0.38 -1.99 16
7 C -0.05 -0.69 5.17 -104.50 -0.54 -1.23 16
8 C 0.10 1.48 4.99 -4.98 -0.02 1.45 16
9 N -0.53 -10.10 4.62 -235.77 -1.09 -11.19 16
10 C 0.04 0.89 4.91 -3.71 -0.02 0.88 16
11 C 0.20 4.76 3.21 -67.49 -0.22 4.54 16
12 H 0.03 0.90 8.14 -51.92 -0.42 0.48 16
13 C -0.14 -3.22 7.96 37.16 0.30 -2.92 16
14 N -0.58 -14.83 2.81 -157.00 -0.44 -15.27 16
15 C -0.26 -7.19 6.70 -15.06 -0.10 -7.29 16
16 H 0.05 1.35 7.18 -52.49 -0.38 0.97 16
17 C 0.04 1.07 3.23 -17.43 -0.06 1.01 16
18 N -0.88 -25.27 12.09 55.49 0.67 -24.60 16
19 Si 0.88 21.30 29.61 -169.99 -5.03 16.27 16
20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16
22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
23 C 0.17 4.05 3.66 -67.49 -0.25 3.80 16
24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16
25 C -0.13 -2.74 8.19 37.16 0.30 -2.44 16
26 C 0.05 1.08 3.53 -3.70 -0.01 1.07 16
27 C 0.07 1.08 4.46 -39.12 -0.17 0.90 16
28 O -0.31 -4.91 6.44 -34.20 -0.22 -5.13 16
29 C 0.03 0.40 10.85 101.05 1.10 1.49 16
30 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16
31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.05 0.34 7.66 -51.92 -0.40 -0.06 16
33 H 0.13 1.11 6.30 -52.48 -0.33 0.77 16
34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16
35 H 0.13 1.42 8.03 -52.49 -0.42 0.99 16
36 H 0.04 0.57 6.54 -51.93 -0.34 0.23 16
37 H 0.08 1.06 7.83 -51.93 -0.41 0.66 16
38 H 0.06 1.00 7.99 -51.92 -0.41 0.59 16
39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16
40 H 0.05 1.14 7.65 -51.93 -0.40 0.74 16
41 H 0.08 2.15 5.20 -51.93 -0.27 1.88 16
42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
43 H 0.25 7.08 8.32 -40.82 -0.34 6.74 16
44 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16
45 H 0.06 1.46 7.69 -51.93 -0.40 1.06 16
46 H 0.05 1.02 7.57 -51.93 -0.39 0.63 16
47 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16
48 H 0.08 1.65 4.32 -51.93 -0.22 1.43 16
49 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16
50 H 0.04 0.47 7.12 -51.93 -0.37 0.10 16
51 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16
LS Contribution 387.55 15.07 5.84 5.84
Total: -1.00 -31.43 387.55 -9.22 -40.66
By element:
Atomic # 1 Polarization: 8.59 SS G_CDS: -8.50 Total: 0.10 kcal
Atomic # 6 Polarization: -2.24 SS G_CDS: -0.10 Total: -2.34 kcal
Atomic # 7 Polarization: -50.20 SS G_CDS: -0.86 Total: -51.06 kcal
Atomic # 8 Polarization: -8.89 SS G_CDS: -0.57 Total: -9.46 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -31.43 -9.22 -40.66 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000895490771.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.110 kcal
(2) G-P(sol) polarization free energy of solvation -31.434 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.676 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.547 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds