Wall clock time and date at job start Tue Mar 31 2020 19:07:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35994 * 117.00077 * 2 1
4 4 C 1.38568 * 120.07237 * 359.97438 * 3 2 1
5 5 C 1.38249 * 119.99925 * 180.02562 * 4 3 2
6 6 C 1.38256 * 120.14356 * 359.75145 * 5 4 3
7 7 C 1.38242 * 120.14817 * 0.50954 * 6 5 4
8 8 C 1.50699 * 120.00160 * 179.76764 * 7 6 5
9 9 N 1.46890 * 109.47161 * 259.72255 * 8 7 6
10 10 C 1.46897 * 111.00438 * 170.00154 * 9 8 7
11 11 C 1.53230 * 109.34432 * 187.25334 * 10 9 8
12 12 H 1.09008 * 109.63243 * 65.87535 * 11 10 9
13 13 C 1.53006 * 109.63197 * 186.45640 * 11 10 9
14 14 N 1.47082 * 108.51993 * 306.16665 * 11 10 9
15 15 C 1.36940 * 120.87880 * 231.16226 * 14 11 10
16 16 H 1.07998 * 119.99655 * 126.63301 * 15 14 11
17 17 C 1.38810 * 120.00271 * 306.62865 * 15 14 11
18 18 N 1.31623 * 119.99784 * 338.07936 * 17 15 14
19 19 Si 1.86796 * 120.00094 * 158.08229 * 17 15 14
20 20 H 1.48497 * 109.47421 * 90.00187 * 19 17 15
21 21 H 1.48504 * 109.47215 * 209.99990 * 19 17 15
22 22 H 1.48501 * 109.47310 * 329.99906 * 19 17 15
23 23 C 1.47076 * 118.23695 * 51.18691 * 14 11 10
24 24 H 1.08998 * 109.78871 * 68.61813 * 23 14 11
25 25 C 1.53002 * 109.62666 * 189.10495 * 23 14 11
26 26 C 1.46899 * 110.99915 * 294.29923 * 9 8 7
27 27 C 1.38571 * 119.99812 * 359.48529 * 7 6 5
28 28 O 1.35986 * 120.07207 * 180.23447 * 27 7 6
29 29 C 1.42902 * 117.00210 * 90.00311 * 28 27 7
30 30 H 1.08992 * 109.47217 * 59.99567 * 1 2 3
31 31 H 1.09000 * 109.47354 * 180.02562 * 1 2 3
32 32 H 1.09009 * 109.46714 * 299.99772 * 1 2 3
33 33 H 1.08003 * 120.00194 * 0.04555 * 4 3 2
34 34 H 1.07993 * 119.92437 * 179.97438 * 5 4 3
35 35 H 1.07996 * 119.92415 * 180.24941 * 6 5 4
36 36 H 1.08999 * 109.46950 * 139.72109 * 8 7 6
37 37 H 1.08995 * 109.46792 * 19.72354 * 8 7 6
38 38 H 1.09010 * 109.48851 * 307.21293 * 10 9 8
39 39 H 1.09001 * 109.49208 * 67.28561 * 10 9 8
40 40 H 1.09004 * 109.47069 * 67.77295 * 13 11 10
41 41 H 1.08999 * 109.47415 * 187.77127 * 13 11 10
42 42 H 1.09002 * 109.46910 * 307.77511 * 13 11 10
43 43 H 0.96998 * 119.99814 * 185.05357 * 18 17 15
44 44 H 1.08997 * 109.47038 * 179.02444 * 25 23 14
45 45 H 1.09000 * 109.46848 * 299.02827 * 25 23 14
46 46 H 1.09001 * 109.47236 * 59.02972 * 25 23 14
47 47 H 1.09005 * 109.49706 * 292.70785 * 26 9 8
48 48 H 1.09005 * 109.49603 * 52.79002 * 26 9 8
49 49 H 1.08997 * 109.47241 * 179.97438 * 29 28 27
50 50 H 1.08997 * 109.47037 * 300.00344 * 29 28 27
51 51 H 1.08999 * 109.46994 * 59.99873 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2117 0.0000
4 6 1.2932 2.3748 -0.0005
5 6 1.9225 3.6058 -0.0011
6 6 3.3030 3.6798 0.0041
7 6 4.0604 2.5233 -0.0008
8 6 5.5650 2.6079 -0.0004
9 7 6.0677 2.3945 -1.3640
10 6 7.5016 2.7018 -1.4506
11 6 7.9457 2.6428 -2.9160
12 1 7.4595 3.4400 -3.4784
13 6 9.4651 2.8026 -2.9995
14 7 7.5549 1.3377 -3.4704
15 6 8.4643 0.5525 -4.1274
16 1 8.6117 -0.4731 -3.8229
17 6 9.1965 1.0747 -5.1848
18 7 8.7514 2.1279 -5.8367
19 14 10.8133 0.2825 -5.6825
20 1 10.5575 -0.7660 -6.7024
21 1 11.7165 1.3155 -6.2504
22 1 11.4513 -0.3316 -4.4904
23 6 6.1614 0.8988 -3.3008
24 1 5.5015 1.5256 -3.9005
25 6 6.0250 -0.5601 -3.7414
26 6 5.7876 1.0265 -1.8202
27 6 3.4360 1.2863 -0.0001
28 8 4.1795 0.1477 -0.0001
29 6 4.5348 -0.3952 1.2731
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3633 0.5139 0.8901
33 1 0.2146 2.3197 -0.0002
34 1 1.3343 4.5115 -0.0019
35 1 3.7909 4.6433 0.0078
36 1 5.9717 1.8427 0.6608
37 1 5.8734 3.5927 0.3506
38 1 7.6838 3.7012 -1.0553
39 1 8.0657 1.9721 -0.8698
40 1 9.9469 1.9277 -2.5630
41 1 9.7635 2.8987 -4.0434
42 1 9.7672 3.6951 -2.4515
43 1 9.2243 2.4486 -6.6206
44 1 4.9954 -0.8880 -3.5985
45 1 6.2915 -0.6479 -4.7947
46 1 6.6909 -1.1836 -3.1449
47 1 6.3756 0.3200 -1.2343
48 1 4.7267 0.8107 -1.6931
49 1 5.1252 -1.3002 1.1303
50 1 5.1200 0.3368 1.8297
51 1 3.6297 -0.6364 1.8306
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000895490771.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:07:36
Heat of formation + Delta-G solvation = -20.798886 kcal
Electronic energy + Delta-G solvation = -31168.832484 eV
Core-core repulsion = 27262.735848 eV
Total energy + Delta-G solvation = -3906.096636 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.23 seconds
Orbital eigenvalues (eV)
-41.68751 -40.04575 -39.03687 -37.92518 -36.38578 -34.41131 -33.49032 -31.80019
-31.01261 -29.41977 -28.29754 -28.17235 -27.35165 -27.15969 -25.91974 -23.45870
-23.23812 -22.06446 -21.62412 -20.82259 -18.98841 -18.13590 -18.11305 -17.69035
-17.33466 -16.81268 -16.34794 -16.12757 -16.06907 -15.83091 -15.75611 -15.49221
-15.14328 -15.09163 -14.57090 -14.33621 -14.18910 -13.55018 -13.38962 -13.29575
-13.27538 -13.11985 -12.95256 -12.76136 -12.64657 -12.61687 -12.50353 -12.30496
-12.22760 -12.05186 -12.01196 -11.91354 -11.79037 -11.50960 -11.42198 -11.14344
-10.81218 -10.15369 -9.71534 -9.13401 -9.06265 -8.26316 -7.68467 -5.51591
0.19698 0.42659 1.42863 1.46794 1.55511 2.31968 2.49636 2.52587
2.93032 3.24632 3.27569 3.64574 3.76752 3.95388 4.11075 4.26654
4.32848 4.35203 4.37143 4.40264 4.42488 4.43120 4.47930 4.51388
4.58360 4.65230 4.70590 4.72145 4.74132 4.74866 4.81016 4.89662
4.90142 4.99121 4.99344 5.03789 5.13097 5.27525 5.34530 5.42661
5.48572 5.52547 5.60087 5.72527 5.74433 5.77319 5.86045 6.23129
6.28571 6.33673 6.62354 6.71390 7.29379 7.86608 8.63312 9.18687
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.018740 B = 0.003448 C = 0.003247
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1493.789187 B = 8118.626335 C = 8621.241708
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.331 6.331
3 C 0.092 3.908
4 C -0.199 4.199
5 C -0.083 4.083
6 C -0.134 4.134
7 C -0.068 4.068
8 C 0.100 3.900
9 N -0.538 5.538
10 C 0.058 3.942
11 C 0.196 3.804
12 H -0.001 1.001
13 C -0.130 4.130
14 N -0.592 5.592
15 C -0.269 4.269
16 H 0.040 0.960
17 C 0.003 3.997
18 N -0.909 5.909
19 Si 0.937 3.063
20 H -0.283 1.283
21 H -0.288 1.288
22 H -0.269 1.269
23 C 0.164 3.836
24 H -0.006 1.006
25 C -0.113 4.113
26 C 0.078 3.922
27 C 0.047 3.953
28 O -0.337 6.337
29 C 0.032 3.968
30 H 0.062 0.938
31 H 0.114 0.886
32 H 0.070 0.930
33 H 0.157 0.843
34 H 0.159 0.841
35 H 0.143 0.857
36 H 0.036 0.964
37 H 0.098 0.902
38 H 0.084 0.916
39 H 0.021 0.979
40 H 0.041 0.959
41 H 0.054 0.946
42 H 0.054 0.946
43 H 0.252 0.748
44 H 0.058 0.942
45 H 0.038 0.962
46 H 0.045 0.955
47 H 0.014 0.986
48 H 0.087 0.913
49 H 0.097 0.903
50 H 0.045 0.955
51 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.681 1.226 17.315 23.393
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.245 6.245
3 C 0.046 3.954
4 C -0.218 4.218
5 C -0.100 4.100
6 C -0.152 4.152
7 C -0.069 4.069
8 C -0.027 4.027
9 N -0.262 5.262
10 C -0.071 4.071
11 C 0.090 3.910
12 H 0.017 0.983
13 C -0.188 4.188
14 N -0.318 5.318
15 C -0.399 4.399
16 H 0.058 0.942
17 C -0.197 4.197
18 N -0.550 5.550
19 Si 0.764 3.236
20 H -0.209 1.209
21 H -0.214 1.214
22 H -0.193 1.193
23 C 0.058 3.942
24 H 0.012 0.988
25 C -0.171 4.171
26 C -0.051 4.051
27 C 0.003 3.997
28 O -0.254 6.254
29 C -0.062 4.062
30 H 0.081 0.919
31 H 0.132 0.868
32 H 0.089 0.911
33 H 0.174 0.826
34 H 0.177 0.823
35 H 0.161 0.839
36 H 0.054 0.946
37 H 0.116 0.884
38 H 0.102 0.898
39 H 0.040 0.960
40 H 0.060 0.940
41 H 0.073 0.927
42 H 0.073 0.927
43 H 0.061 0.939
44 H 0.077 0.923
45 H 0.057 0.943
46 H 0.064 0.936
47 H 0.033 0.967
48 H 0.105 0.895
49 H 0.116 0.884
50 H 0.064 0.936
51 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -15.673 1.370 16.755 22.984
hybrid contribution 1.113 -0.812 -0.186 1.391
sum -14.560 0.558 16.569 22.065
Atomic orbital electron populations
1.23347 0.76581 1.05397 1.02314 1.86131 1.23307 1.26423 1.88671
1.19567 0.91415 0.85851 0.98519 1.21467 1.01200 0.91354 1.07740
1.21316 0.94200 0.98072 0.96446 1.21144 0.94229 0.97770 1.02082
1.20014 0.95831 0.92149 0.98954 1.20968 0.90308 1.01929 0.89446
1.61904 1.15914 1.26195 1.22191 1.22598 0.86890 0.99796 0.97825
1.20251 0.93595 0.87205 0.89951 0.98292 1.21773 0.95579 0.99202
1.02217 1.44298 1.04659 1.18662 1.64173 1.18683 1.15440 0.95475
1.10329 0.94229 1.26074 1.01456 0.97190 0.94951 1.70201 1.39619
1.27432 1.17741 0.85801 0.81499 0.78015 0.78311 1.20927 1.21356
1.19324 1.20694 0.86483 0.93851 0.93195 0.98799 1.21499 0.99720
0.95523 1.00352 1.22522 1.00435 0.87262 0.94864 1.18033 0.87048
0.86683 1.07968 1.86283 1.70281 1.39208 1.29613 1.23042 0.99877
0.98806 0.84472 0.91923 0.86754 0.91148 0.82558 0.82345 0.83889
0.94586 0.88368 0.89766 0.96045 0.94004 0.92695 0.92681 0.93851
0.92264 0.94272 0.93560 0.96728 0.89492 0.88414 0.93599 0.93176
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.25 9.81 113.37 1.11 1.36 16
2 O -0.33 -8.17 10.28 -79.61 -0.82 -8.99 16
3 C 0.09 2.39 6.70 22.57 0.15 2.54 16
4 C -0.20 -3.95 9.04 22.35 0.20 -3.75 16
5 C -0.08 -1.55 10.04 22.28 0.22 -1.33 16
6 C -0.13 -3.05 9.66 22.27 0.22 -2.84 16
7 C -0.07 -1.92 5.17 -19.78 -0.10 -2.02 16
8 C 0.10 2.97 4.99 85.56 0.43 3.40 16
9 N -0.54 -20.34 4.62 -899.85 -4.16 -24.50 16
10 C 0.06 2.27 4.91 86.38 0.42 2.70 16
11 C 0.20 9.47 3.21 44.96 0.14 9.61 16
12 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16
13 C -0.13 -6.00 7.96 71.98 0.57 -5.43 16
14 N -0.59 -31.17 2.81 -650.63 -1.83 -33.00 16
15 C -0.27 -15.00 6.70 84.03 0.56 -14.44 16
16 H 0.04 2.27 7.18 -2.91 -0.02 2.25 16
17 C 0.00 0.16 3.23 84.86 0.27 0.43 16
18 N -0.91 -53.90 12.09 21.65 0.26 -53.64 16
19 Si 0.94 44.38 29.61 68.60 2.03 46.41 16
20 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16
21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16
22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16
23 C 0.16 7.92 3.66 44.96 0.16 8.08 16
24 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16
25 C -0.11 -5.03 8.19 71.98 0.59 -4.44 16
26 C 0.08 3.21 3.53 86.38 0.30 3.51 16
27 C 0.05 1.39 4.46 22.57 0.10 1.49 16
28 O -0.34 -10.52 6.44 -79.52 -0.51 -11.04 16
29 C 0.03 0.77 10.85 113.37 1.23 2.00 16
30 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16
31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16
32 H 0.07 0.72 7.66 -2.38 -0.02 0.70 16
33 H 0.16 2.10 6.30 -2.91 -0.02 2.08 16
34 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16
35 H 0.14 2.75 8.03 -2.91 -0.02 2.72 16
36 H 0.04 1.07 6.54 -2.39 -0.02 1.06 16
37 H 0.10 2.45 7.83 -2.39 -0.02 2.43 16
38 H 0.08 2.81 7.99 -2.38 -0.02 2.80 16
39 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16
40 H 0.04 1.95 7.65 -2.39 -0.02 1.93 16
41 H 0.05 2.86 5.20 -2.39 -0.01 2.85 16
42 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16
43 H 0.25 14.43 8.32 -92.71 -0.77 13.66 16
44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16
45 H 0.04 1.88 7.69 -2.39 -0.02 1.86 16
46 H 0.05 2.03 7.57 -2.39 -0.02 2.01 16
47 H 0.01 0.63 8.03 -2.38 -0.02 0.61 16
48 H 0.09 3.54 4.32 -2.38 -0.01 3.53 16
49 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16
50 H 0.05 1.02 7.12 -2.39 -0.02 1.01 16
51 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
Total: -1.00 -70.03 387.55 2.48 -67.56
By element:
Atomic # 1 Polarization: 15.40 SS G_CDS: 0.90 Total: 16.31 kcal
Atomic # 6 Polarization: -5.71 SS G_CDS: 6.60 Total: 0.88 kcal
Atomic # 7 Polarization: -105.41 SS G_CDS: -5.72 Total: -111.14 kcal
Atomic # 8 Polarization: -18.69 SS G_CDS: -1.33 Total: -20.02 kcal
Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal
Total: -70.03 2.48 -67.56 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000895490771.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.758 kcal
(2) G-P(sol) polarization free energy of solvation -70.033 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.275 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.557 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.799 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds