Wall clock time and date at job start Tue Mar 31 2020 19:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 117.00077 * 2 1 4 4 C 1.38568 * 120.07237 * 359.97438 * 3 2 1 5 5 C 1.38249 * 119.99925 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.14356 * 359.75145 * 5 4 3 7 7 C 1.38242 * 120.14817 * 0.50954 * 6 5 4 8 8 C 1.50699 * 120.00160 * 179.76764 * 7 6 5 9 9 N 1.46890 * 109.47161 * 259.72255 * 8 7 6 10 10 C 1.46897 * 111.00438 * 170.00154 * 9 8 7 11 11 C 1.53230 * 109.34432 * 187.25334 * 10 9 8 12 12 H 1.09008 * 109.63243 * 65.87535 * 11 10 9 13 13 C 1.53006 * 109.63197 * 186.45640 * 11 10 9 14 14 N 1.47082 * 108.51993 * 306.16665 * 11 10 9 15 15 C 1.36940 * 120.87880 * 231.16226 * 14 11 10 16 16 H 1.07998 * 119.99655 * 126.63301 * 15 14 11 17 17 C 1.38810 * 120.00271 * 306.62865 * 15 14 11 18 18 N 1.31623 * 119.99784 * 338.07936 * 17 15 14 19 19 Si 1.86796 * 120.00094 * 158.08229 * 17 15 14 20 20 H 1.48497 * 109.47421 * 90.00187 * 19 17 15 21 21 H 1.48504 * 109.47215 * 209.99990 * 19 17 15 22 22 H 1.48501 * 109.47310 * 329.99906 * 19 17 15 23 23 C 1.47076 * 118.23695 * 51.18691 * 14 11 10 24 24 H 1.08998 * 109.78871 * 68.61813 * 23 14 11 25 25 C 1.53002 * 109.62666 * 189.10495 * 23 14 11 26 26 C 1.46899 * 110.99915 * 294.29923 * 9 8 7 27 27 C 1.38571 * 119.99812 * 359.48529 * 7 6 5 28 28 O 1.35986 * 120.07207 * 180.23447 * 27 7 6 29 29 C 1.42902 * 117.00210 * 90.00311 * 28 27 7 30 30 H 1.08992 * 109.47217 * 59.99567 * 1 2 3 31 31 H 1.09000 * 109.47354 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46714 * 299.99772 * 1 2 3 33 33 H 1.08003 * 120.00194 * 0.04555 * 4 3 2 34 34 H 1.07993 * 119.92437 * 179.97438 * 5 4 3 35 35 H 1.07996 * 119.92415 * 180.24941 * 6 5 4 36 36 H 1.08999 * 109.46950 * 139.72109 * 8 7 6 37 37 H 1.08995 * 109.46792 * 19.72354 * 8 7 6 38 38 H 1.09010 * 109.48851 * 307.21293 * 10 9 8 39 39 H 1.09001 * 109.49208 * 67.28561 * 10 9 8 40 40 H 1.09004 * 109.47069 * 67.77295 * 13 11 10 41 41 H 1.08999 * 109.47415 * 187.77127 * 13 11 10 42 42 H 1.09002 * 109.46910 * 307.77511 * 13 11 10 43 43 H 0.96998 * 119.99814 * 185.05357 * 18 17 15 44 44 H 1.08997 * 109.47038 * 179.02444 * 25 23 14 45 45 H 1.09000 * 109.46848 * 299.02827 * 25 23 14 46 46 H 1.09001 * 109.47236 * 59.02972 * 25 23 14 47 47 H 1.09005 * 109.49706 * 292.70785 * 26 9 8 48 48 H 1.09005 * 109.49603 * 52.79002 * 26 9 8 49 49 H 1.08997 * 109.47241 * 179.97438 * 29 28 27 50 50 H 1.08997 * 109.47037 * 300.00344 * 29 28 27 51 51 H 1.08999 * 109.46994 * 59.99873 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9225 3.6058 -0.0011 6 6 3.3030 3.6798 0.0041 7 6 4.0604 2.5233 -0.0008 8 6 5.5650 2.6079 -0.0004 9 7 6.0677 2.3945 -1.3640 10 6 7.5016 2.7018 -1.4506 11 6 7.9457 2.6428 -2.9160 12 1 7.4595 3.4400 -3.4784 13 6 9.4651 2.8026 -2.9995 14 7 7.5549 1.3377 -3.4704 15 6 8.4643 0.5525 -4.1274 16 1 8.6117 -0.4731 -3.8229 17 6 9.1965 1.0747 -5.1848 18 7 8.7514 2.1279 -5.8367 19 14 10.8133 0.2825 -5.6825 20 1 10.5575 -0.7660 -6.7024 21 1 11.7165 1.3155 -6.2504 22 1 11.4513 -0.3316 -4.4904 23 6 6.1614 0.8988 -3.3008 24 1 5.5015 1.5256 -3.9005 25 6 6.0250 -0.5601 -3.7414 26 6 5.7876 1.0265 -1.8202 27 6 3.4360 1.2863 -0.0001 28 8 4.1795 0.1477 -0.0001 29 6 4.5348 -0.3952 1.2731 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 0.2146 2.3197 -0.0002 34 1 1.3343 4.5115 -0.0019 35 1 3.7909 4.6433 0.0078 36 1 5.9717 1.8427 0.6608 37 1 5.8734 3.5927 0.3506 38 1 7.6838 3.7012 -1.0553 39 1 8.0657 1.9721 -0.8698 40 1 9.9469 1.9277 -2.5630 41 1 9.7635 2.8987 -4.0434 42 1 9.7672 3.6951 -2.4515 43 1 9.2243 2.4486 -6.6206 44 1 4.9954 -0.8880 -3.5985 45 1 6.2915 -0.6479 -4.7947 46 1 6.6909 -1.1836 -3.1449 47 1 6.3756 0.3200 -1.2343 48 1 4.7267 0.8107 -1.6931 49 1 5.1252 -1.3002 1.1303 50 1 5.1200 0.3368 1.8297 51 1 3.6297 -0.6364 1.8306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895490771.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:36 Heat of formation + Delta-G solvation = -20.798886 kcal Electronic energy + Delta-G solvation = -31168.832484 eV Core-core repulsion = 27262.735848 eV Total energy + Delta-G solvation = -3906.096636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.68751 -40.04575 -39.03687 -37.92518 -36.38578 -34.41131 -33.49032 -31.80019 -31.01261 -29.41977 -28.29754 -28.17235 -27.35165 -27.15969 -25.91974 -23.45870 -23.23812 -22.06446 -21.62412 -20.82259 -18.98841 -18.13590 -18.11305 -17.69035 -17.33466 -16.81268 -16.34794 -16.12757 -16.06907 -15.83091 -15.75611 -15.49221 -15.14328 -15.09163 -14.57090 -14.33621 -14.18910 -13.55018 -13.38962 -13.29575 -13.27538 -13.11985 -12.95256 -12.76136 -12.64657 -12.61687 -12.50353 -12.30496 -12.22760 -12.05186 -12.01196 -11.91354 -11.79037 -11.50960 -11.42198 -11.14344 -10.81218 -10.15369 -9.71534 -9.13401 -9.06265 -8.26316 -7.68467 -5.51591 0.19698 0.42659 1.42863 1.46794 1.55511 2.31968 2.49636 2.52587 2.93032 3.24632 3.27569 3.64574 3.76752 3.95388 4.11075 4.26654 4.32848 4.35203 4.37143 4.40264 4.42488 4.43120 4.47930 4.51388 4.58360 4.65230 4.70590 4.72145 4.74132 4.74866 4.81016 4.89662 4.90142 4.99121 4.99344 5.03789 5.13097 5.27525 5.34530 5.42661 5.48572 5.52547 5.60087 5.72527 5.74433 5.77319 5.86045 6.23129 6.28571 6.33673 6.62354 6.71390 7.29379 7.86608 8.63312 9.18687 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018740 B = 0.003448 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.789187 B = 8118.626335 C = 8621.241708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.092 3.908 4 C -0.199 4.199 5 C -0.083 4.083 6 C -0.134 4.134 7 C -0.068 4.068 8 C 0.100 3.900 9 N -0.538 5.538 10 C 0.058 3.942 11 C 0.196 3.804 12 H -0.001 1.001 13 C -0.130 4.130 14 N -0.592 5.592 15 C -0.269 4.269 16 H 0.040 0.960 17 C 0.003 3.997 18 N -0.909 5.909 19 Si 0.937 3.063 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.269 1.269 23 C 0.164 3.836 24 H -0.006 1.006 25 C -0.113 4.113 26 C 0.078 3.922 27 C 0.047 3.953 28 O -0.337 6.337 29 C 0.032 3.968 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.143 0.857 36 H 0.036 0.964 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.021 0.979 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.252 0.748 44 H 0.058 0.942 45 H 0.038 0.962 46 H 0.045 0.955 47 H 0.014 0.986 48 H 0.087 0.913 49 H 0.097 0.903 50 H 0.045 0.955 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.681 1.226 17.315 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.046 3.954 4 C -0.218 4.218 5 C -0.100 4.100 6 C -0.152 4.152 7 C -0.069 4.069 8 C -0.027 4.027 9 N -0.262 5.262 10 C -0.071 4.071 11 C 0.090 3.910 12 H 0.017 0.983 13 C -0.188 4.188 14 N -0.318 5.318 15 C -0.399 4.399 16 H 0.058 0.942 17 C -0.197 4.197 18 N -0.550 5.550 19 Si 0.764 3.236 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.193 1.193 23 C 0.058 3.942 24 H 0.012 0.988 25 C -0.171 4.171 26 C -0.051 4.051 27 C 0.003 3.997 28 O -0.254 6.254 29 C -0.062 4.062 30 H 0.081 0.919 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.174 0.826 34 H 0.177 0.823 35 H 0.161 0.839 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.040 0.960 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.033 0.967 48 H 0.105 0.895 49 H 0.116 0.884 50 H 0.064 0.936 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.673 1.370 16.755 22.984 hybrid contribution 1.113 -0.812 -0.186 1.391 sum -14.560 0.558 16.569 22.065 Atomic orbital electron populations 1.23347 0.76581 1.05397 1.02314 1.86131 1.23307 1.26423 1.88671 1.19567 0.91415 0.85851 0.98519 1.21467 1.01200 0.91354 1.07740 1.21316 0.94200 0.98072 0.96446 1.21144 0.94229 0.97770 1.02082 1.20014 0.95831 0.92149 0.98954 1.20968 0.90308 1.01929 0.89446 1.61904 1.15914 1.26195 1.22191 1.22598 0.86890 0.99796 0.97825 1.20251 0.93595 0.87205 0.89951 0.98292 1.21773 0.95579 0.99202 1.02217 1.44298 1.04659 1.18662 1.64173 1.18683 1.15440 0.95475 1.10329 0.94229 1.26074 1.01456 0.97190 0.94951 1.70201 1.39619 1.27432 1.17741 0.85801 0.81499 0.78015 0.78311 1.20927 1.21356 1.19324 1.20694 0.86483 0.93851 0.93195 0.98799 1.21499 0.99720 0.95523 1.00352 1.22522 1.00435 0.87262 0.94864 1.18033 0.87048 0.86683 1.07968 1.86283 1.70281 1.39208 1.29613 1.23042 0.99877 0.98806 0.84472 0.91923 0.86754 0.91148 0.82558 0.82345 0.83889 0.94586 0.88368 0.89766 0.96045 0.94004 0.92695 0.92681 0.93851 0.92264 0.94272 0.93560 0.96728 0.89492 0.88414 0.93599 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -8.17 10.28 -79.61 -0.82 -8.99 16 3 C 0.09 2.39 6.70 22.57 0.15 2.54 16 4 C -0.20 -3.95 9.04 22.35 0.20 -3.75 16 5 C -0.08 -1.55 10.04 22.28 0.22 -1.33 16 6 C -0.13 -3.05 9.66 22.27 0.22 -2.84 16 7 C -0.07 -1.92 5.17 -19.78 -0.10 -2.02 16 8 C 0.10 2.97 4.99 85.56 0.43 3.40 16 9 N -0.54 -20.34 4.62 -899.85 -4.16 -24.50 16 10 C 0.06 2.27 4.91 86.38 0.42 2.70 16 11 C 0.20 9.47 3.21 44.96 0.14 9.61 16 12 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 13 C -0.13 -6.00 7.96 71.98 0.57 -5.43 16 14 N -0.59 -31.17 2.81 -650.63 -1.83 -33.00 16 15 C -0.27 -15.00 6.70 84.03 0.56 -14.44 16 16 H 0.04 2.27 7.18 -2.91 -0.02 2.25 16 17 C 0.00 0.16 3.23 84.86 0.27 0.43 16 18 N -0.91 -53.90 12.09 21.65 0.26 -53.64 16 19 Si 0.94 44.38 29.61 68.60 2.03 46.41 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 C 0.16 7.92 3.66 44.96 0.16 8.08 16 24 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 25 C -0.11 -5.03 8.19 71.98 0.59 -4.44 16 26 C 0.08 3.21 3.53 86.38 0.30 3.51 16 27 C 0.05 1.39 4.46 22.57 0.10 1.49 16 28 O -0.34 -10.52 6.44 -79.52 -0.51 -11.04 16 29 C 0.03 0.77 10.85 113.37 1.23 2.00 16 30 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 0.72 7.66 -2.38 -0.02 0.70 16 33 H 0.16 2.10 6.30 -2.91 -0.02 2.08 16 34 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.14 2.75 8.03 -2.91 -0.02 2.72 16 36 H 0.04 1.07 6.54 -2.39 -0.02 1.06 16 37 H 0.10 2.45 7.83 -2.39 -0.02 2.43 16 38 H 0.08 2.81 7.99 -2.38 -0.02 2.80 16 39 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.04 1.95 7.65 -2.39 -0.02 1.93 16 41 H 0.05 2.86 5.20 -2.39 -0.01 2.85 16 42 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.25 14.43 8.32 -92.71 -0.77 13.66 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.04 1.88 7.69 -2.39 -0.02 1.86 16 46 H 0.05 2.03 7.57 -2.39 -0.02 2.01 16 47 H 0.01 0.63 8.03 -2.38 -0.02 0.61 16 48 H 0.09 3.54 4.32 -2.38 -0.01 3.53 16 49 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.05 1.02 7.12 -2.39 -0.02 1.01 16 51 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.03 387.55 2.48 -67.56 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.90 Total: 16.31 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 6.60 Total: 0.88 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -5.72 Total: -111.14 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -1.33 Total: -20.02 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -70.03 2.48 -67.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895490771.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.758 kcal (2) G-P(sol) polarization free energy of solvation -70.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds