Wall clock time and date at job start Tue Mar 31 2020 18:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32998 * 119.99619 * 2 1 4 4 C 1.47097 * 120.00013 * 351.04903 * 3 2 1 5 5 O 1.21605 * 120.00446 * 354.45180 * 4 3 2 6 6 N 1.34776 * 119.99726 * 174.45637 * 4 3 2 7 7 C 1.47169 * 121.06682 * 174.23731 * 6 4 3 8 8 C 1.53279 * 108.55546 * 128.85176 * 7 6 4 9 9 H 1.08998 * 109.51070 * 292.96365 * 8 7 6 10 10 C 1.53003 * 109.50949 * 172.86647 * 8 7 6 11 11 O 1.43095 * 109.22686 * 52.89104 * 8 7 6 12 12 C 1.42065 * 114.32495 * 298.84971 * 11 8 7 13 13 C 1.54520 * 110.33325 * 298.07197 * 12 11 8 14 14 C 1.55026 * 101.52530 * 276.06157 * 13 12 11 15 15 N 1.47482 * 104.89822 * 323.62755 * 14 13 12 16 16 C 1.36933 * 125.66112 * 203.97946 * 15 14 13 17 17 H 1.07999 * 120.00196 * 168.06045 * 16 15 14 18 18 C 1.38812 * 120.00227 * 348.05560 * 16 15 14 19 19 N 1.31626 * 120.00008 * 1.11586 * 18 16 15 20 20 Si 1.86800 * 120.00587 * 181.11933 * 18 16 15 21 21 H 1.48500 * 109.47378 * 94.97941 * 20 18 16 22 22 H 1.48500 * 109.47411 * 214.98508 * 20 18 16 23 23 H 1.48504 * 109.46856 * 334.98504 * 20 18 16 24 24 C 1.47188 * 108.67577 * 24.01204 * 15 14 13 25 25 C 1.47310 * 121.06968 * 353.95103 * 6 4 3 26 26 C 1.50706 * 120.00344 * 180.02562 * 2 1 3 27 27 C 1.53000 * 117.49739 * 8.74306 * 26 2 1 28 28 C 1.53001 * 117.49351 * 300.08663 * 26 2 1 29 29 H 1.09004 * 109.47361 * 83.58019 * 1 2 3 30 30 H 1.09000 * 109.47568 * 323.57599 * 1 2 3 31 31 H 1.09006 * 109.46876 * 203.57303 * 1 2 3 32 32 H 1.07998 * 119.99583 * 171.04640 * 3 2 1 33 33 H 1.08996 * 109.62227 * 248.57160 * 7 6 4 34 34 H 1.08992 * 109.62030 * 9.12800 * 7 6 4 35 35 H 1.09003 * 109.46875 * 59.99800 * 10 8 7 36 36 H 1.09005 * 109.46686 * 180.02562 * 10 8 7 37 37 H 1.08999 * 109.47021 * 300.00071 * 10 8 7 38 38 H 1.09002 * 111.01321 * 34.11876 * 13 12 11 39 39 H 1.08995 * 111.01739 * 158.00147 * 13 12 11 40 40 H 1.08999 * 110.35696 * 204.76816 * 14 13 12 41 41 H 1.09004 * 110.44435 * 82.52623 * 14 13 12 42 42 H 0.96998 * 120.00288 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.90751 * 239.13147 * 24 15 14 44 44 H 1.08994 * 110.06211 * 117.95773 * 24 15 14 45 45 H 1.09007 * 109.67654 * 349.14847 * 25 6 4 46 46 H 1.09001 * 109.67991 * 109.69445 * 25 6 4 47 47 H 1.08998 * 115.54921 * 154.41706 * 26 2 1 48 48 H 1.09000 * 117.49476 * 0.02562 * 27 26 2 49 49 H 1.08992 * 117.49987 * 145.02247 * 27 26 2 50 50 H 1.08999 * 117.49514 * 214.97580 * 28 26 2 51 51 H 1.09005 * 117.50182 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4497 2.4179 -0.1982 5 8 0.2628 2.4061 -0.4623 6 7 2.1037 3.5912 -0.0872 7 6 1.4374 4.8648 -0.4030 8 6 1.6407 5.8264 0.7733 9 1 1.1013 5.4549 1.6445 10 6 1.1123 7.2122 0.3976 11 8 3.0366 5.9120 1.0761 12 6 3.6280 4.6798 1.4637 13 6 2.9694 4.1518 2.7580 14 6 3.7611 4.9230 3.8452 15 7 5.1394 5.0015 3.3265 16 6 6.2692 5.1622 4.0834 17 1 7.2425 5.0163 3.6386 18 6 6.1636 5.5127 5.4224 19 7 4.9770 5.6691 5.9702 20 14 7.7054 5.7625 6.4470 21 1 8.0608 7.2042 6.4634 22 1 7.4577 5.2979 7.8356 23 1 8.8236 4.9838 5.8566 24 6 5.0990 4.8792 1.8603 25 6 3.5064 3.6403 0.3600 26 6 2.2606 -1.3051 -0.0006 27 6 1.4522 -2.5875 -0.2075 28 6 2.0246 -2.2575 1.1733 29 1 -0.3634 0.1149 -1.0212 30 1 -0.3634 0.8269 0.6102 31 1 -0.3633 -0.9420 0.4110 32 1 3.2420 1.1575 0.1456 33 1 1.8744 5.2927 -1.3052 34 1 0.3720 4.6927 -0.5551 35 1 0.0499 7.1447 0.1634 36 1 1.2576 7.8955 1.2344 37 1 1.6533 7.5837 -0.4726 38 1 1.9104 4.4078 2.7902 39 1 3.1132 3.0761 2.8591 40 1 3.7412 4.3765 4.7880 41 1 3.3488 5.9232 3.9788 42 1 4.9032 5.9144 6.9057 43 1 5.6888 4.0191 1.5432 44 1 5.4883 5.7865 1.3986 45 1 3.8042 2.6639 0.7422 46 1 4.1485 3.9194 -0.4755 47 1 3.2638 -1.2685 -0.4252 48 1 0.3754 -2.4872 -0.3435 49 1 1.9236 -3.3947 -0.7678 50 1 2.8725 -2.8479 1.5207 51 1 1.3246 -1.9400 1.9463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071144469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:44 Heat of formation + Delta-G solvation = 3.416439 kcal Electronic energy + Delta-G solvation = -30421.614603 eV Core-core repulsion = 26516.568022 eV Total energy + Delta-G solvation = -3905.046581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.65929 -39.16990 -37.97908 -36.25822 -34.72247 -33.46151 -32.93115 -31.38772 -29.27913 -28.50962 -28.29867 -26.44598 -25.59087 -23.94164 -23.52713 -22.63937 -21.81547 -20.25680 -19.90267 -19.13380 -18.22715 -17.38837 -17.02289 -16.56097 -15.98795 -15.60873 -15.26890 -15.00914 -14.75872 -14.30474 -14.22795 -13.94122 -13.59547 -13.30413 -13.13917 -13.03894 -12.68010 -12.60350 -12.32857 -12.24060 -12.15779 -11.88009 -11.73685 -11.66937 -11.55861 -11.38874 -11.13867 -11.00178 -10.89742 -10.87425 -10.71374 -10.49762 -10.20004 -10.03334 -10.01279 -9.70895 -9.54255 -9.49176 -9.05383 -8.59558 -8.27389 -6.79241 -5.72494 -3.08649 1.21412 2.94029 3.20541 3.40102 3.45087 3.47144 3.65729 3.86995 4.21674 4.48266 4.56619 4.63774 4.71573 4.76968 4.83101 4.95380 5.08372 5.10146 5.15955 5.21635 5.32328 5.42211 5.47833 5.49341 5.51849 5.57668 5.59730 5.66405 5.68984 5.74084 5.78893 5.81000 5.81802 5.90183 5.96075 6.04863 6.17117 6.18960 6.32393 6.39579 6.45950 6.50217 6.51168 6.61646 6.67880 7.41609 7.53452 7.61147 7.67434 7.81353 8.20355 8.27725 9.19828 9.80418 10.48335 11.38768 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010748 B = 0.003564 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.618151 B = 7853.927588 C = 9795.928585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.000 4.000 3 C -0.228 4.228 4 C 0.554 3.446 5 O -0.548 6.548 6 N -0.608 5.608 7 C 0.085 3.915 8 C 0.069 3.931 9 H 0.066 0.934 10 C -0.140 4.140 11 O -0.352 6.352 12 C 0.096 3.904 13 C -0.168 4.168 14 C 0.179 3.821 15 N -0.601 5.601 16 C -0.228 4.228 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.153 3.847 25 C 0.093 3.907 26 C -0.134 4.134 27 C -0.173 4.173 28 C -0.165 4.165 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.130 0.870 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.025 0.975 42 H 0.253 0.747 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.097 0.903 46 H 0.073 0.927 47 H 0.117 0.883 48 H 0.101 0.899 49 H 0.098 0.902 50 H 0.101 0.899 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.604 -10.794 -14.115 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.001 4.001 3 C -0.249 4.249 4 C 0.346 3.654 5 O -0.428 6.428 6 N -0.341 5.341 7 C -0.037 4.037 8 C 0.011 3.989 9 H 0.084 0.916 10 C -0.198 4.198 11 O -0.271 6.271 12 C 0.056 3.944 13 C -0.207 4.207 14 C 0.054 3.946 15 N -0.327 5.327 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.027 3.973 25 C -0.030 4.030 26 C -0.152 4.152 27 C -0.209 4.209 28 C -0.202 4.202 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.115 0.885 46 H 0.092 0.908 47 H 0.135 0.865 48 H 0.119 0.881 49 H 0.117 0.883 50 H 0.119 0.881 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.057 -10.567 -14.048 19.775 hybrid contribution 0.894 0.086 0.601 1.081 sum -8.163 -10.481 -13.447 18.903 Atomic orbital electron populations 1.21119 0.90850 1.02185 1.03603 1.21773 0.96055 0.92342 0.89971 1.22348 1.00770 0.91668 1.10117 1.18444 0.86324 0.83855 0.76779 1.90723 1.15018 1.87251 1.49826 1.48026 1.13292 1.06021 1.66728 1.22321 0.99698 0.83521 0.98190 1.22464 0.84256 0.96022 0.96182 0.91600 1.21687 1.00295 0.95081 1.02736 1.87914 1.21388 1.30524 1.87252 1.22156 0.96001 0.83868 0.92424 1.23526 0.99459 1.00482 0.97231 1.21446 0.82433 0.96696 0.94034 1.44463 1.03381 1.86063 0.98821 1.19020 0.84990 1.40041 0.91623 0.90508 1.24876 0.96882 1.01054 0.97407 1.69934 1.20861 1.53382 1.12352 0.86100 0.82085 0.77925 0.79644 1.21580 1.21727 1.20561 1.21051 0.89622 0.98961 0.87660 1.22302 0.81581 1.01231 0.97926 1.21290 1.00189 0.88653 1.05051 1.23074 1.00393 0.97611 0.99858 1.23008 1.03759 1.01808 0.91618 0.90235 0.89412 0.92628 0.85242 0.90982 0.88447 0.91194 0.91189 0.91805 0.91947 0.91596 0.90468 0.95694 0.93702 0.94482 0.94455 0.88502 0.90829 0.86540 0.88055 0.88309 0.88091 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 7.88 36.00 0.28 -1.07 16 2 C 0.00 0.01 5.80 -101.16 -0.59 -0.58 16 3 C -0.23 -2.83 8.86 -37.81 -0.33 -3.17 16 4 C 0.55 8.09 7.49 -12.67 -0.09 7.99 16 5 O -0.55 -8.97 12.80 5.27 0.07 -8.90 16 6 N -0.61 -8.66 2.92 -174.26 -0.51 -9.17 16 7 C 0.09 1.15 5.93 -3.53 -0.02 1.13 16 8 C 0.07 1.02 3.17 -26.59 -0.08 0.93 16 9 H 0.07 1.05 6.13 -51.93 -0.32 0.73 16 10 C -0.14 -1.68 9.57 37.16 0.36 -1.33 16 11 O -0.35 -6.36 9.87 -35.23 -0.35 -6.71 16 12 C 0.10 1.71 0.83 -89.94 -0.07 1.63 16 13 C -0.17 -3.25 5.90 -24.86 -0.15 -3.40 16 14 C 0.18 4.40 5.47 -2.43 -0.01 4.39 16 15 N -0.60 -15.36 3.40 -170.24 -0.58 -15.94 16 16 C -0.23 -6.34 10.25 -15.06 -0.15 -6.49 16 17 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 18 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 19 N -0.92 -26.99 10.45 55.49 0.58 -26.41 16 20 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.15 3.17 6.61 -3.33 -0.02 3.15 16 25 C 0.09 1.32 4.96 -4.06 -0.02 1.30 16 26 C -0.13 -1.19 6.01 -91.77 -0.55 -1.74 16 27 C -0.17 -1.26 9.77 -26.69 -0.26 -1.52 16 28 C -0.17 -1.31 10.11 -26.69 -0.27 -1.58 16 29 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 30 H 0.09 1.17 6.33 -51.93 -0.33 0.84 16 31 H 0.05 0.50 6.26 -51.93 -0.33 0.18 16 32 H 0.13 1.43 6.20 -52.49 -0.33 1.11 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.30 7.06 -51.93 -0.37 0.93 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.17 5.98 -51.93 -0.31 0.86 16 39 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 40 H 0.08 2.11 6.70 -51.93 -0.35 1.76 16 41 H 0.03 0.68 8.12 -51.93 -0.42 0.26 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.04 0.71 7.79 -51.93 -0.40 0.30 16 44 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 45 H 0.10 1.27 5.43 -51.92 -0.28 0.99 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.10 0.72 6.40 -51.93 -0.33 0.38 16 49 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -31.94 390.11 -10.38 -42.32 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.35 Total: 2.60 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.09 Total: -0.61 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.51 Total: -51.52 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.28 Total: -15.61 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.94 -10.38 -42.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071144469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.732 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds