Wall clock time and date at job start Tue Mar 31 2020 18:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32998 * 119.99619 * 2 1 4 4 C 1.47097 * 120.00013 * 351.04903 * 3 2 1 5 5 O 1.21605 * 120.00446 * 354.45180 * 4 3 2 6 6 N 1.34776 * 119.99726 * 174.45637 * 4 3 2 7 7 C 1.47169 * 121.06682 * 174.23731 * 6 4 3 8 8 C 1.53279 * 108.55546 * 128.85176 * 7 6 4 9 9 H 1.08998 * 109.51070 * 292.96365 * 8 7 6 10 10 C 1.53003 * 109.50949 * 172.86647 * 8 7 6 11 11 O 1.43095 * 109.22686 * 52.89104 * 8 7 6 12 12 C 1.42065 * 114.32495 * 298.84971 * 11 8 7 13 13 C 1.54520 * 110.33325 * 298.07197 * 12 11 8 14 14 C 1.55026 * 101.52530 * 276.06157 * 13 12 11 15 15 N 1.47482 * 104.89822 * 323.62755 * 14 13 12 16 16 C 1.36933 * 125.66112 * 203.97946 * 15 14 13 17 17 H 1.07999 * 120.00196 * 168.06045 * 16 15 14 18 18 C 1.38812 * 120.00227 * 348.05560 * 16 15 14 19 19 N 1.31626 * 120.00008 * 1.11586 * 18 16 15 20 20 Si 1.86800 * 120.00587 * 181.11933 * 18 16 15 21 21 H 1.48500 * 109.47378 * 94.97941 * 20 18 16 22 22 H 1.48500 * 109.47411 * 214.98508 * 20 18 16 23 23 H 1.48504 * 109.46856 * 334.98504 * 20 18 16 24 24 C 1.47188 * 108.67577 * 24.01204 * 15 14 13 25 25 C 1.47310 * 121.06968 * 353.95103 * 6 4 3 26 26 C 1.50706 * 120.00344 * 180.02562 * 2 1 3 27 27 C 1.53000 * 117.49739 * 8.74306 * 26 2 1 28 28 C 1.53001 * 117.49351 * 300.08663 * 26 2 1 29 29 H 1.09004 * 109.47361 * 83.58019 * 1 2 3 30 30 H 1.09000 * 109.47568 * 323.57599 * 1 2 3 31 31 H 1.09006 * 109.46876 * 203.57303 * 1 2 3 32 32 H 1.07998 * 119.99583 * 171.04640 * 3 2 1 33 33 H 1.08996 * 109.62227 * 248.57160 * 7 6 4 34 34 H 1.08992 * 109.62030 * 9.12800 * 7 6 4 35 35 H 1.09003 * 109.46875 * 59.99800 * 10 8 7 36 36 H 1.09005 * 109.46686 * 180.02562 * 10 8 7 37 37 H 1.08999 * 109.47021 * 300.00071 * 10 8 7 38 38 H 1.09002 * 111.01321 * 34.11876 * 13 12 11 39 39 H 1.08995 * 111.01739 * 158.00147 * 13 12 11 40 40 H 1.08999 * 110.35696 * 204.76816 * 14 13 12 41 41 H 1.09004 * 110.44435 * 82.52623 * 14 13 12 42 42 H 0.96998 * 120.00288 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.90751 * 239.13147 * 24 15 14 44 44 H 1.08994 * 110.06211 * 117.95773 * 24 15 14 45 45 H 1.09007 * 109.67654 * 349.14847 * 25 6 4 46 46 H 1.09001 * 109.67991 * 109.69445 * 25 6 4 47 47 H 1.08998 * 115.54921 * 154.41706 * 26 2 1 48 48 H 1.09000 * 117.49476 * 0.02562 * 27 26 2 49 49 H 1.08992 * 117.49987 * 145.02247 * 27 26 2 50 50 H 1.08999 * 117.49514 * 214.97580 * 28 26 2 51 51 H 1.09005 * 117.50182 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4497 2.4179 -0.1982 5 8 0.2628 2.4061 -0.4623 6 7 2.1037 3.5912 -0.0872 7 6 1.4374 4.8648 -0.4030 8 6 1.6407 5.8264 0.7733 9 1 1.1013 5.4549 1.6445 10 6 1.1123 7.2122 0.3976 11 8 3.0366 5.9120 1.0761 12 6 3.6280 4.6798 1.4637 13 6 2.9694 4.1518 2.7580 14 6 3.7611 4.9230 3.8452 15 7 5.1394 5.0015 3.3265 16 6 6.2692 5.1622 4.0834 17 1 7.2425 5.0163 3.6386 18 6 6.1636 5.5127 5.4224 19 7 4.9770 5.6691 5.9702 20 14 7.7054 5.7625 6.4470 21 1 8.0608 7.2042 6.4634 22 1 7.4577 5.2979 7.8356 23 1 8.8236 4.9838 5.8566 24 6 5.0990 4.8792 1.8603 25 6 3.5064 3.6403 0.3600 26 6 2.2606 -1.3051 -0.0006 27 6 1.4522 -2.5875 -0.2075 28 6 2.0246 -2.2575 1.1733 29 1 -0.3634 0.1149 -1.0212 30 1 -0.3634 0.8269 0.6102 31 1 -0.3633 -0.9420 0.4110 32 1 3.2420 1.1575 0.1456 33 1 1.8744 5.2927 -1.3052 34 1 0.3720 4.6927 -0.5551 35 1 0.0499 7.1447 0.1634 36 1 1.2576 7.8955 1.2344 37 1 1.6533 7.5837 -0.4726 38 1 1.9104 4.4078 2.7902 39 1 3.1132 3.0761 2.8591 40 1 3.7412 4.3765 4.7880 41 1 3.3488 5.9232 3.9788 42 1 4.9032 5.9144 6.9057 43 1 5.6888 4.0191 1.5432 44 1 5.4883 5.7865 1.3986 45 1 3.8042 2.6639 0.7422 46 1 4.1485 3.9194 -0.4755 47 1 3.2638 -1.2685 -0.4252 48 1 0.3754 -2.4872 -0.3435 49 1 1.9236 -3.3947 -0.7678 50 1 2.8725 -2.8479 1.5207 51 1 1.3246 -1.9400 1.9463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071144469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:43 Heat of formation + Delta-G solvation = -14.704660 kcal Electronic energy + Delta-G solvation = -30422.400393 eV Core-core repulsion = 26516.568022 eV Total energy + Delta-G solvation = -3905.832370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.89203 -40.34557 -38.80729 -37.86012 -35.91156 -34.82975 -34.12222 -32.98629 -31.04063 -30.02686 -29.25504 -27.63741 -27.10671 -25.45415 -24.58845 -23.22159 -23.14643 -21.96487 -21.11982 -20.35675 -19.21894 -18.94663 -18.41841 -17.76868 -17.04579 -16.83905 -16.61024 -16.40152 -16.03864 -15.74899 -15.59408 -15.09031 -14.95229 -14.59628 -14.43308 -14.12829 -13.92038 -13.83527 -13.72177 -13.49448 -13.22593 -13.17458 -12.95473 -12.80474 -12.77176 -12.69412 -12.46605 -12.30241 -12.21166 -12.14482 -11.97475 -11.87549 -11.83335 -11.61524 -11.44724 -11.32009 -10.90862 -10.70486 -10.61773 -9.94912 -9.43415 -8.86503 -7.85528 -5.24329 0.29136 1.47272 1.49489 1.58486 1.85876 2.18701 2.47234 2.61278 3.01409 3.31686 3.36132 3.49234 3.62899 3.77640 3.81022 3.85551 3.93073 3.95853 4.00136 4.09529 4.13555 4.20190 4.25160 4.34976 4.47608 4.53022 4.58294 4.66298 4.69922 4.72164 4.75441 4.81684 4.83382 4.87374 4.95455 5.00101 5.04863 5.06153 5.08853 5.15272 5.22181 5.26310 5.35375 5.46238 5.51320 5.55026 5.55926 5.69915 6.20329 6.32581 6.33369 7.07515 7.11384 7.74413 8.41792 9.24994 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010748 B = 0.003564 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.618151 B = 7853.927588 C = 9795.928585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.011 3.989 3 C -0.249 4.249 4 C 0.549 3.451 5 O -0.572 6.572 6 N -0.611 5.611 7 C 0.090 3.910 8 C 0.066 3.934 9 H 0.048 0.952 10 C -0.135 4.135 11 O -0.375 6.375 12 C 0.106 3.894 13 C -0.151 4.151 14 C 0.189 3.811 15 N -0.622 5.622 16 C -0.241 4.241 17 H 0.087 0.913 18 C -0.065 4.065 19 N -0.952 5.952 20 Si 0.980 3.020 21 H -0.290 1.290 22 H -0.295 1.295 23 H -0.262 1.262 24 C 0.148 3.852 25 C 0.103 3.897 26 C -0.148 4.148 27 C -0.161 4.161 28 C -0.166 4.166 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.042 0.958 41 H -0.016 1.016 42 H 0.247 0.753 43 H 0.064 0.936 44 H 0.029 0.971 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.127 0.873 48 H 0.103 0.897 49 H 0.116 0.884 50 H 0.112 0.888 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.856 -12.623 -16.075 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.009 3.991 3 C -0.269 4.269 4 C 0.343 3.657 5 O -0.454 6.454 6 N -0.343 5.343 7 C -0.032 4.032 8 C 0.008 3.992 9 H 0.066 0.934 10 C -0.193 4.193 11 O -0.294 6.294 12 C 0.065 3.935 13 C -0.189 4.189 14 C 0.063 3.937 15 N -0.348 5.348 16 C -0.370 4.370 17 H 0.105 0.895 18 C -0.258 4.258 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.217 1.217 22 H -0.221 1.221 23 H -0.187 1.187 24 C 0.023 3.977 25 C -0.021 4.021 26 C -0.166 4.166 27 C -0.198 4.198 28 C -0.203 4.203 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.162 0.838 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.002 0.998 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.130 0.870 46 H 0.113 0.887 47 H 0.145 0.855 48 H 0.121 0.879 49 H 0.134 0.866 50 H 0.131 0.869 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.298 -12.403 -16.048 21.915 hybrid contribution 0.589 0.650 1.196 1.483 sum -7.709 -11.753 -14.852 20.449 Atomic orbital electron populations 1.21059 0.91209 1.02265 1.02984 1.22036 0.96042 0.93239 0.87802 1.22383 1.01433 0.90938 1.12176 1.18836 0.86139 0.84516 0.76230 1.90713 1.16062 1.87600 1.51058 1.48078 1.13282 1.06274 1.66650 1.22305 0.99957 0.83006 0.97956 1.22643 0.82354 0.97996 0.96166 0.93416 1.21700 1.01948 0.93117 1.02506 1.87885 1.23247 1.30959 1.87343 1.22003 0.93836 0.84845 0.92820 1.23323 0.98914 1.00283 0.96414 1.21101 0.83284 0.94716 0.94556 1.44750 1.02982 1.85971 1.01123 1.19472 0.86167 1.39179 0.92174 0.89532 1.25751 0.99833 1.01467 0.98777 1.70170 1.23001 1.54693 1.12159 0.85033 0.78936 0.77608 0.77589 1.21714 1.22135 1.18671 1.21250 0.92161 0.99484 0.84790 1.22208 0.82064 1.00531 0.97247 1.21360 1.00809 0.87998 1.06392 1.23181 1.00476 0.96849 0.99286 1.23080 1.04164 1.01390 0.91631 0.90601 0.91798 0.90608 0.83782 0.89340 0.88318 0.88610 0.92610 0.90726 0.91595 0.90432 0.93939 0.99802 0.94412 0.91783 0.95296 0.86995 0.88688 0.85489 0.87873 0.86603 0.86920 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 7.88 71.23 0.56 -1.96 16 2 C 0.01 0.22 5.80 -17.61 -0.10 0.12 16 3 C -0.25 -5.70 8.86 23.43 0.21 -5.49 16 4 C 0.55 15.28 7.49 86.57 0.65 15.93 16 5 O -0.57 -18.36 12.80 -4.05 -0.05 -18.41 16 6 N -0.61 -16.30 2.92 -823.50 -2.41 -18.70 16 7 C 0.09 2.28 5.93 86.35 0.51 2.80 16 8 C 0.07 1.91 3.17 30.69 0.10 2.01 16 9 H 0.05 1.54 6.13 -2.39 -0.01 1.52 16 10 C -0.14 -3.11 9.57 71.98 0.69 -2.42 16 11 O -0.37 -13.41 9.87 -148.97 -1.47 -14.88 16 12 C 0.11 3.66 0.83 -10.35 -0.01 3.65 16 13 C -0.15 -5.88 5.90 31.80 0.19 -5.69 16 14 C 0.19 9.71 5.47 86.89 0.48 10.19 16 15 N -0.62 -32.31 3.40 -692.51 -2.36 -34.67 16 16 C -0.24 -13.50 10.25 84.03 0.86 -12.64 16 17 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 18 C -0.07 -3.74 5.48 84.86 0.47 -3.27 16 19 N -0.95 -58.18 10.45 21.65 0.23 -57.95 16 20 Si 0.98 45.73 29.55 68.60 2.03 47.75 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 24 C 0.15 6.02 6.61 86.47 0.57 6.60 16 25 C 0.10 2.67 4.96 85.93 0.43 3.10 16 26 C -0.15 -2.25 6.01 -11.54 -0.07 -2.31 16 27 C -0.16 -1.88 9.77 30.62 0.30 -1.58 16 28 C -0.17 -2.22 10.11 30.62 0.31 -1.91 16 29 H 0.08 1.67 7.96 -2.38 -0.02 1.65 16 30 H 0.06 1.69 6.33 -2.39 -0.02 1.67 16 31 H 0.08 1.25 6.26 -2.38 -0.01 1.23 16 32 H 0.14 2.79 6.20 -2.91 -0.02 2.78 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 2.50 7.06 -2.39 -0.02 2.48 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 2.52 5.98 -2.39 -0.01 2.50 16 39 H 0.08 2.84 7.84 -2.39 -0.02 2.82 16 40 H 0.04 2.45 6.70 -2.39 -0.02 2.43 16 41 H -0.02 -0.94 8.12 -2.39 -0.02 -0.96 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.06 2.28 7.79 -2.39 -0.02 2.26 16 44 H 0.03 1.23 8.06 -2.39 -0.02 1.21 16 45 H 0.11 2.60 5.43 -2.38 -0.01 2.59 16 46 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.10 1.17 6.40 -2.39 -0.02 1.16 16 49 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -71.64 390.11 3.02 -68.62 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.92 Total: 21.14 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 6.13 Total: 7.11 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -4.53 Total: -111.32 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.52 Total: -33.30 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -71.64 3.02 -68.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071144469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.913 kcal (2) G-P(sol) polarization free energy of solvation -71.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds