Wall clock time and date at job start Tue Mar 31 2020 18:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32996 * 119.99950 * 2 1 4 4 C 1.47099 * 119.99744 * 173.11364 * 3 2 1 5 5 O 1.21619 * 119.99791 * 353.88370 * 4 3 2 6 6 N 1.34771 * 120.00194 * 173.88589 * 4 3 2 7 7 C 1.47162 * 121.05898 * 5.56808 * 6 4 3 8 8 C 1.53286 * 108.50022 * 128.81059 * 7 6 4 9 9 H 1.09000 * 109.51198 * 293.05575 * 8 7 6 10 10 C 1.52999 * 109.51165 * 172.95689 * 8 7 6 11 11 O 1.43088 * 109.22217 * 52.98353 * 8 7 6 12 12 C 1.42057 * 114.39307 * 298.85531 * 11 8 7 13 13 C 1.54521 * 110.33357 * 182.57172 * 12 11 8 14 14 C 1.55016 * 101.53447 * 83.93226 * 13 12 11 15 15 N 1.47491 * 104.89800 * 36.37571 * 14 13 12 16 16 C 1.36934 * 125.66314 * 155.94942 * 15 14 13 17 17 H 1.07999 * 120.00211 * 148.16906 * 16 15 14 18 18 C 1.38816 * 119.99934 * 328.16339 * 16 15 14 19 19 N 1.31617 * 119.99755 * 167.74487 * 18 16 15 20 20 Si 1.86792 * 120.00193 * 347.74404 * 18 16 15 21 21 H 1.48500 * 109.47116 * 87.19136 * 20 18 16 22 22 H 1.48506 * 109.47411 * 207.19108 * 20 18 16 23 23 H 1.48496 * 109.47273 * 327.19226 * 20 18 16 24 24 C 1.47184 * 108.66653 * 335.98440 * 15 14 13 25 25 C 1.47297 * 121.06150 * 185.29463 * 6 4 3 26 26 C 1.50699 * 119.99801 * 180.02562 * 2 1 3 27 27 C 1.53003 * 117.49876 * 2.67118 * 26 2 1 28 28 C 1.52997 * 117.49886 * 294.04859 * 26 2 1 29 29 H 1.08998 * 109.47365 * 89.99319 * 1 2 3 30 30 H 1.09000 * 109.47106 * 209.99932 * 1 2 3 31 31 H 1.09005 * 109.46781 * 329.99517 * 1 2 3 32 32 H 1.07993 * 120.00288 * 353.38950 * 3 2 1 33 33 H 1.08997 * 109.63381 * 248.51594 * 7 6 4 34 34 H 1.08999 * 109.62946 * 8.90774 * 7 6 4 35 35 H 1.09000 * 109.47477 * 60.00479 * 10 8 7 36 36 H 1.09000 * 109.46873 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.47526 * 299.99877 * 10 8 7 38 38 H 1.09005 * 111.01570 * 201.99678 * 13 12 11 39 39 H 1.09004 * 111.01445 * 325.87135 * 13 12 11 40 40 H 1.09007 * 110.35855 * 155.23040 * 14 13 12 41 41 H 1.09007 * 110.35803 * 277.41372 * 14 13 12 42 42 H 0.97000 * 120.00499 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.90439 * 242.13580 * 24 15 14 44 44 H 1.08997 * 109.90900 * 120.88143 * 24 15 14 45 45 H 1.08999 * 109.63318 * 349.01787 * 25 6 4 46 46 H 1.08994 * 109.64068 * 109.63422 * 25 6 4 47 47 H 1.08998 * 115.55054 * 148.37419 * 26 2 1 48 48 H 1.09000 * 117.49643 * 0.02562 * 27 26 2 49 49 H 1.08997 * 117.49812 * 145.01967 * 27 26 2 50 50 H 1.09002 * 117.50096 * 214.98071 * 28 26 2 51 51 H 1.09001 * 117.49795 * 359.97393 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6350 1.1563 0.1527 5 8 4.2248 0.1195 0.3901 6 7 4.3219 2.3094 0.0297 7 6 3.6244 3.5945 -0.1361 8 6 4.1738 4.5832 0.8984 9 1 3.8936 4.2557 1.8996 10 6 3.5935 5.9741 0.6346 11 8 5.6000 4.6314 0.7930 12 6 6.2491 3.3931 1.0444 13 6 7.7828 3.5657 0.9692 14 6 8.1077 4.0750 2.3968 15 7 7.1763 3.3481 3.2798 16 6 7.3684 3.1015 4.6130 17 1 6.5207 3.0493 5.2801 18 6 8.6527 2.9186 5.1070 19 7 8.8649 2.9227 6.4059 20 14 10.0797 2.6666 3.9283 21 1 10.6266 3.9866 3.5238 22 1 11.1422 1.8752 4.5993 23 1 9.6049 1.9377 2.7248 24 6 6.0066 2.9313 2.4897 25 6 5.7944 2.3241 0.0630 26 6 2.2605 -1.3051 -0.0006 27 6 1.4396 -2.5947 -0.0644 28 6 2.1347 -2.1940 1.2383 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6375 2.0839 -0.1077 33 1 3.8005 3.9798 -1.1404 34 1 2.5549 3.4535 0.0196 35 1 2.5069 5.9350 0.7113 36 1 3.9843 6.6764 1.3709 37 1 3.8756 6.3017 -0.3660 38 1 8.2743 2.6128 0.7728 39 1 8.0563 4.3069 0.2182 40 1 9.1394 3.8393 2.6579 41 1 7.9362 5.1493 2.4644 42 1 9.7622 2.7945 6.7513 43 1 5.1058 3.4020 2.8835 44 1 5.9052 1.8464 2.5207 45 1 6.1631 1.3507 0.3865 46 1 6.1810 2.5542 -0.9297 47 1 3.2207 -1.2934 -0.5162 48 1 0.3546 -2.4991 -0.1064 49 1 1.8597 -3.4316 -0.6222 50 1 3.0121 -2.7673 1.5376 51 1 1.5074 -1.8345 2.0540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071144471.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:53 Heat of formation + Delta-G solvation = 14.657857 kcal Electronic energy + Delta-G solvation = -30682.105395 eV Core-core repulsion = 26777.546279 eV Total energy + Delta-G solvation = -3904.559116 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.73888 -39.28376 -37.67143 -36.61390 -34.62920 -33.67164 -33.10192 -31.63778 -29.85260 -29.07538 -28.04200 -26.68011 -25.88748 -24.00231 -22.94791 -22.40794 -21.91855 -20.86098 -20.33691 -19.09572 -18.26017 -17.43623 -17.17854 -16.60396 -16.19129 -15.76485 -15.46312 -14.95069 -14.83999 -14.59172 -14.08114 -13.83913 -13.69392 -13.44023 -13.35154 -13.27361 -12.94618 -12.71382 -12.57959 -12.51201 -12.36559 -11.99796 -11.97419 -11.71553 -11.46741 -11.44611 -11.32734 -11.26227 -10.99987 -10.92754 -10.82818 -10.60122 -10.52006 -10.29042 -9.76710 -9.66901 -9.43195 -9.31534 -9.08670 -8.53632 -8.35726 -6.84678 -5.91875 -3.34569 1.17792 2.90108 3.22725 3.33392 3.46778 3.51859 3.70800 3.85196 4.34141 4.41990 4.54738 4.61725 4.72245 4.82790 4.88483 4.90488 4.96221 4.97833 5.05893 5.10136 5.22733 5.23650 5.29716 5.31857 5.36593 5.43281 5.44851 5.50033 5.55617 5.59103 5.69276 5.78394 5.82546 5.92044 5.94380 6.00440 6.04375 6.08798 6.12376 6.15797 6.20231 6.36655 6.38222 6.44246 6.55283 6.65145 6.85508 7.40584 7.50285 7.88768 8.23146 8.36723 8.87069 9.70140 10.24899 11.24657 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012213 B = 0.003754 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.107941 B = 7457.155050 C = 8753.945691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.001 4.001 3 C -0.229 4.229 4 C 0.550 3.450 5 O -0.531 6.531 6 N -0.612 5.612 7 C 0.080 3.920 8 C 0.067 3.933 9 H 0.070 0.930 10 C -0.140 4.140 11 O -0.356 6.356 12 C 0.094 3.906 13 C -0.119 4.119 14 C 0.120 3.880 15 N -0.608 5.608 16 C -0.242 4.242 17 H 0.085 0.915 18 C 0.026 3.974 19 N -0.913 5.913 20 Si 0.903 3.097 21 H -0.285 1.285 22 H -0.305 1.305 23 H -0.273 1.273 24 C 0.121 3.879 25 C 0.100 3.900 26 C -0.121 4.121 27 C -0.190 4.190 28 C -0.154 4.154 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.264 0.736 43 H 0.033 0.967 44 H 0.041 0.959 45 H 0.104 0.896 46 H 0.072 0.928 47 H 0.134 0.866 48 H 0.094 0.906 49 H 0.094 0.906 50 H 0.098 0.902 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.497 -1.785 -18.510 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.003 4.003 3 C -0.250 4.250 4 C 0.341 3.659 5 O -0.410 6.410 6 N -0.345 5.345 7 C -0.043 4.043 8 C 0.009 3.991 9 H 0.088 0.912 10 C -0.198 4.198 11 O -0.275 6.275 12 C 0.053 3.947 13 C -0.158 4.158 14 C -0.004 4.004 15 N -0.336 5.336 16 C -0.370 4.370 17 H 0.102 0.898 18 C -0.173 4.173 19 N -0.556 5.556 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.234 1.234 23 H -0.199 1.199 24 C -0.004 4.004 25 C -0.023 4.023 26 C -0.139 4.139 27 C -0.227 4.227 28 C -0.191 4.191 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.147 0.853 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.123 0.877 46 H 0.090 0.910 47 H 0.152 0.848 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.117 0.883 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.962 -2.216 -18.190 24.970 hybrid contribution 0.723 -0.111 -0.438 0.852 sum -16.240 -2.327 -18.628 24.822 Atomic orbital electron populations 1.21017 0.91122 1.03413 1.02930 1.21829 0.95173 0.93411 0.89887 1.22384 0.93411 0.98566 1.10594 1.18499 0.87822 0.82852 0.76679 1.90758 1.70928 1.31043 1.48243 1.48045 1.06811 1.06672 1.72993 1.22530 0.97611 0.83905 1.00235 1.22488 0.82429 0.95868 0.98336 0.91178 1.21690 1.00086 0.94960 1.03034 1.87830 1.17526 1.31185 1.90922 1.22152 0.93779 0.83919 0.94809 1.22740 0.91631 1.02203 0.99207 1.21954 0.94520 0.95755 0.88187 1.44635 1.19725 1.62668 1.06526 1.18582 0.94160 1.43918 0.80331 0.89761 1.25279 0.97875 0.98598 0.95596 1.69748 1.21650 1.52984 1.11266 0.86578 0.81876 0.77271 0.80645 1.21383 1.23376 1.19932 1.21848 0.92114 0.97678 0.88758 1.22067 0.79336 1.01358 0.99546 1.21514 1.00587 0.87724 1.04073 1.23124 0.99022 0.98648 1.01905 1.22814 1.02798 1.02257 0.91186 0.90306 0.90697 0.90902 0.85326 0.90730 0.88912 0.91108 0.91167 0.91791 0.89877 0.90106 0.94103 0.94450 0.92635 0.94917 0.94150 0.87739 0.91007 0.84813 0.88742 0.88713 0.88345 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 9.47 36.01 0.34 -0.53 16 2 C 0.00 -0.01 5.80 -101.17 -0.59 -0.60 16 3 C -0.23 -2.52 8.94 -37.81 -0.34 -2.86 16 4 C 0.55 8.00 7.56 -12.67 -0.10 7.90 16 5 O -0.53 -9.35 12.77 5.26 0.07 -9.29 16 6 N -0.61 -8.45 2.96 -174.30 -0.52 -8.97 16 7 C 0.08 0.86 5.79 -3.53 -0.02 0.84 16 8 C 0.07 0.87 3.17 -26.58 -0.08 0.78 16 9 H 0.07 1.03 6.24 -51.93 -0.32 0.71 16 10 C -0.14 -1.36 9.57 37.16 0.36 -1.01 16 11 O -0.36 -5.82 9.90 -35.23 -0.35 -6.17 16 12 C 0.09 1.66 0.80 -89.96 -0.07 1.58 16 13 C -0.12 -2.17 6.21 -24.87 -0.15 -2.33 16 14 C 0.12 2.74 6.10 -2.43 -0.01 2.73 16 15 N -0.61 -15.62 3.06 -170.23 -0.52 -16.14 16 16 C -0.24 -7.22 10.58 -15.06 -0.16 -7.38 16 17 H 0.08 2.69 8.06 -52.49 -0.42 2.26 16 18 C 0.03 0.78 5.48 -17.43 -0.10 0.68 16 19 N -0.91 -28.96 13.97 55.49 0.78 -28.19 16 20 Si 0.90 23.59 24.59 -169.99 -4.18 19.41 16 21 H -0.29 -7.19 6.77 56.52 0.38 -6.81 16 22 H -0.31 -8.02 7.11 56.52 0.40 -7.62 16 23 H -0.27 -6.91 6.96 56.52 0.39 -6.51 16 24 C 0.12 2.64 6.34 -3.33 -0.02 2.62 16 25 C 0.10 1.54 5.18 -4.08 -0.02 1.52 16 26 C -0.12 -1.40 4.39 -91.77 -0.40 -1.80 16 27 C -0.19 -1.71 9.78 -26.73 -0.26 -1.97 16 28 C -0.15 -1.70 10.23 -26.73 -0.27 -1.97 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.47 6.42 -51.93 -0.33 0.13 16 31 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 32 H 0.13 1.05 5.98 -52.49 -0.31 0.74 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.76 5.49 -51.93 -0.29 0.47 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.48 8.01 -51.93 -0.42 1.06 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.04 1.00 2.31 -51.93 -0.12 0.88 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 43 H 0.03 0.72 6.03 -51.93 -0.31 0.41 16 44 H 0.04 0.94 7.59 -51.93 -0.39 0.55 16 45 H 0.10 1.80 6.77 -51.93 -0.35 1.45 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.13 1.87 6.16 -51.93 -0.32 1.55 16 48 H 0.09 0.69 6.34 -51.93 -0.33 0.36 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -34.80 384.83 -8.98 -43.79 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.16 Total: 1.53 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.91 Total: -1.78 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.26 Total: -53.29 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.28 Total: -15.46 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.18 Total: 19.41 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.80 -8.98 -43.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071144471.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.445 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds