Wall clock time and date at job start Tue Mar 31 2020 18:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32996 * 119.99950 * 2 1 4 4 C 1.47099 * 119.99744 * 173.11364 * 3 2 1 5 5 O 1.21619 * 119.99791 * 353.88370 * 4 3 2 6 6 N 1.34771 * 120.00194 * 173.88589 * 4 3 2 7 7 C 1.47162 * 121.05898 * 5.56808 * 6 4 3 8 8 C 1.53286 * 108.50022 * 128.81059 * 7 6 4 9 9 H 1.09000 * 109.51198 * 293.05575 * 8 7 6 10 10 C 1.52999 * 109.51165 * 172.95689 * 8 7 6 11 11 O 1.43088 * 109.22217 * 52.98353 * 8 7 6 12 12 C 1.42057 * 114.39307 * 298.85531 * 11 8 7 13 13 C 1.54521 * 110.33357 * 182.57172 * 12 11 8 14 14 C 1.55016 * 101.53447 * 83.93226 * 13 12 11 15 15 N 1.47491 * 104.89800 * 36.37571 * 14 13 12 16 16 C 1.36934 * 125.66314 * 155.94942 * 15 14 13 17 17 H 1.07999 * 120.00211 * 148.16906 * 16 15 14 18 18 C 1.38816 * 119.99934 * 328.16339 * 16 15 14 19 19 N 1.31617 * 119.99755 * 167.74487 * 18 16 15 20 20 Si 1.86792 * 120.00193 * 347.74404 * 18 16 15 21 21 H 1.48500 * 109.47116 * 87.19136 * 20 18 16 22 22 H 1.48506 * 109.47411 * 207.19108 * 20 18 16 23 23 H 1.48496 * 109.47273 * 327.19226 * 20 18 16 24 24 C 1.47184 * 108.66653 * 335.98440 * 15 14 13 25 25 C 1.47297 * 121.06150 * 185.29463 * 6 4 3 26 26 C 1.50699 * 119.99801 * 180.02562 * 2 1 3 27 27 C 1.53003 * 117.49876 * 2.67118 * 26 2 1 28 28 C 1.52997 * 117.49886 * 294.04859 * 26 2 1 29 29 H 1.08998 * 109.47365 * 89.99319 * 1 2 3 30 30 H 1.09000 * 109.47106 * 209.99932 * 1 2 3 31 31 H 1.09005 * 109.46781 * 329.99517 * 1 2 3 32 32 H 1.07993 * 120.00288 * 353.38950 * 3 2 1 33 33 H 1.08997 * 109.63381 * 248.51594 * 7 6 4 34 34 H 1.08999 * 109.62946 * 8.90774 * 7 6 4 35 35 H 1.09000 * 109.47477 * 60.00479 * 10 8 7 36 36 H 1.09000 * 109.46873 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.47526 * 299.99877 * 10 8 7 38 38 H 1.09005 * 111.01570 * 201.99678 * 13 12 11 39 39 H 1.09004 * 111.01445 * 325.87135 * 13 12 11 40 40 H 1.09007 * 110.35855 * 155.23040 * 14 13 12 41 41 H 1.09007 * 110.35803 * 277.41372 * 14 13 12 42 42 H 0.97000 * 120.00499 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.90439 * 242.13580 * 24 15 14 44 44 H 1.08997 * 109.90900 * 120.88143 * 24 15 14 45 45 H 1.08999 * 109.63318 * 349.01787 * 25 6 4 46 46 H 1.08994 * 109.64068 * 109.63422 * 25 6 4 47 47 H 1.08998 * 115.55054 * 148.37419 * 26 2 1 48 48 H 1.09000 * 117.49643 * 0.02562 * 27 26 2 49 49 H 1.08997 * 117.49812 * 145.01967 * 27 26 2 50 50 H 1.09002 * 117.50096 * 214.98071 * 28 26 2 51 51 H 1.09001 * 117.49795 * 359.97393 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6350 1.1563 0.1527 5 8 4.2248 0.1195 0.3901 6 7 4.3219 2.3094 0.0297 7 6 3.6244 3.5945 -0.1361 8 6 4.1738 4.5832 0.8984 9 1 3.8936 4.2557 1.8996 10 6 3.5935 5.9741 0.6346 11 8 5.6000 4.6314 0.7930 12 6 6.2491 3.3931 1.0444 13 6 7.7828 3.5657 0.9692 14 6 8.1077 4.0750 2.3968 15 7 7.1763 3.3481 3.2798 16 6 7.3684 3.1015 4.6130 17 1 6.5207 3.0493 5.2801 18 6 8.6527 2.9186 5.1070 19 7 8.8649 2.9227 6.4059 20 14 10.0797 2.6666 3.9283 21 1 10.6266 3.9866 3.5238 22 1 11.1422 1.8752 4.5993 23 1 9.6049 1.9377 2.7248 24 6 6.0066 2.9313 2.4897 25 6 5.7944 2.3241 0.0630 26 6 2.2605 -1.3051 -0.0006 27 6 1.4396 -2.5947 -0.0644 28 6 2.1347 -2.1940 1.2383 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6375 2.0839 -0.1077 33 1 3.8005 3.9798 -1.1404 34 1 2.5549 3.4535 0.0196 35 1 2.5069 5.9350 0.7113 36 1 3.9843 6.6764 1.3709 37 1 3.8756 6.3017 -0.3660 38 1 8.2743 2.6128 0.7728 39 1 8.0563 4.3069 0.2182 40 1 9.1394 3.8393 2.6579 41 1 7.9362 5.1493 2.4644 42 1 9.7622 2.7945 6.7513 43 1 5.1058 3.4020 2.8835 44 1 5.9052 1.8464 2.5207 45 1 6.1631 1.3507 0.3865 46 1 6.1810 2.5542 -0.9297 47 1 3.2207 -1.2934 -0.5162 48 1 0.3546 -2.4991 -0.1064 49 1 1.8597 -3.4316 -0.6222 50 1 3.0121 -2.7673 1.5376 51 1 1.5074 -1.8345 2.0540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071144471.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:52 Heat of formation + Delta-G solvation = -8.431539 kcal Electronic energy + Delta-G solvation = -30683.106626 eV Core-core repulsion = 26777.546279 eV Total energy + Delta-G solvation = -3905.560348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.93923 -40.43222 -38.67219 -38.08596 -35.79833 -34.97971 -34.33927 -33.37912 -31.33630 -30.48323 -29.09818 -27.88426 -27.14072 -25.52098 -23.99865 -23.29201 -23.21282 -22.52555 -21.44682 -20.35449 -19.27469 -19.11043 -18.39072 -18.05612 -17.63199 -17.22691 -16.53664 -16.04081 -16.01780 -15.76724 -15.49320 -15.42971 -15.15126 -14.63895 -14.48437 -14.25541 -14.15993 -14.02577 -13.91335 -13.49445 -13.33136 -13.18689 -13.17028 -13.02949 -12.90489 -12.74349 -12.51243 -12.49622 -12.40447 -12.22346 -12.18234 -11.91863 -11.79646 -11.60958 -11.37054 -11.21208 -10.99283 -10.74997 -10.45457 -9.94883 -9.44312 -8.99316 -8.27406 -5.69187 0.32990 1.21966 1.33130 1.45005 1.87634 2.22571 2.32986 2.51654 2.98566 3.03303 3.12106 3.51060 3.52700 3.60203 3.64055 3.71963 3.87819 3.98838 4.03301 4.08765 4.12519 4.21404 4.26093 4.31381 4.36954 4.44346 4.55925 4.58384 4.59295 4.64648 4.68115 4.72087 4.76795 4.81969 4.83549 4.87887 4.94737 4.97220 5.06582 5.09350 5.14115 5.19472 5.22461 5.31962 5.38576 5.43901 5.63336 5.67356 6.02077 6.23897 6.39663 6.66623 7.17526 7.39839 8.02510 8.92967 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012213 B = 0.003754 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.107941 B = 7457.155050 C = 8753.945691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.007 3.993 3 C -0.244 4.244 4 C 0.537 3.463 5 O -0.576 6.576 6 N -0.616 5.616 7 C 0.084 3.916 8 C 0.057 3.943 9 H 0.042 0.958 10 C -0.132 4.132 11 O -0.365 6.365 12 C 0.111 3.889 13 C -0.111 4.111 14 C 0.111 3.889 15 N -0.626 5.626 16 C -0.248 4.248 17 H 0.041 0.959 18 C -0.031 4.031 19 N -0.958 5.958 20 Si 0.970 3.030 21 H -0.266 1.266 22 H -0.306 1.306 23 H -0.261 1.261 24 C 0.124 3.876 25 C 0.105 3.895 26 C -0.142 4.142 27 C -0.160 4.160 28 C -0.172 4.172 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.031 0.969 41 H 0.038 0.962 42 H 0.267 0.733 43 H 0.023 0.977 44 H 0.015 0.985 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.103 0.897 48 H 0.121 0.879 49 H 0.100 0.900 50 H 0.080 0.920 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.476 -0.823 -22.400 29.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.005 3.995 3 C -0.264 4.264 4 C 0.331 3.669 5 O -0.458 6.458 6 N -0.348 5.348 7 C -0.038 4.038 8 C -0.001 4.001 9 H 0.060 0.940 10 C -0.190 4.190 11 O -0.284 6.284 12 C 0.069 3.931 13 C -0.149 4.149 14 C -0.012 4.012 15 N -0.353 5.353 16 C -0.377 4.377 17 H 0.059 0.941 18 C -0.226 4.226 19 N -0.603 5.603 20 Si 0.799 3.201 21 H -0.193 1.193 22 H -0.235 1.235 23 H -0.186 1.186 24 C -0.001 4.001 25 C -0.018 4.018 26 C -0.160 4.160 27 C -0.196 4.196 28 C -0.209 4.209 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.180 0.820 33 H 0.118 0.882 34 H 0.142 0.858 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.136 0.864 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.034 0.966 45 H 0.097 0.903 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.139 0.861 49 H 0.119 0.881 50 H 0.098 0.902 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.978 -1.214 -22.118 29.169 hybrid contribution 1.213 -0.407 0.881 1.554 sum -17.764 -1.621 -21.237 27.735 Atomic orbital electron populations 1.21106 0.87979 1.04522 1.04537 1.22193 0.97171 0.92264 0.87849 1.22486 0.91173 1.00406 1.12343 1.19235 0.89424 0.82360 0.75854 1.90748 1.72074 1.32648 1.50291 1.48183 1.06189 1.07836 1.72615 1.22737 0.98849 0.81622 1.00575 1.22792 0.80759 0.98649 0.97857 0.94029 1.21702 1.01756 0.92187 1.03314 1.87815 1.19696 1.30274 1.90599 1.21861 0.93963 0.85203 0.92041 1.22751 0.91877 1.03391 0.96856 1.22118 0.93159 0.95595 0.90375 1.44747 1.21487 1.63355 1.05751 1.18443 0.93227 1.43829 0.82179 0.94094 1.26017 1.00783 0.98502 0.97302 1.69891 1.22531 1.54526 1.13333 0.85504 0.77977 0.78058 0.78535 1.19262 1.23478 1.18586 1.21889 0.90455 0.96093 0.91703 1.21869 0.80930 0.99043 0.99967 1.21454 1.00490 0.89904 1.04198 1.23218 1.00127 0.97035 0.99234 1.22817 1.02986 1.02975 0.92138 0.88166 0.90005 0.89421 0.81996 0.88165 0.85847 0.87954 0.92883 0.90183 0.89311 0.86363 0.95111 0.94455 0.92455 0.95887 0.96647 0.90348 0.88135 0.87951 0.86063 0.88132 0.90154 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.47 71.24 0.67 -0.53 16 2 C 0.01 0.13 5.80 -17.61 -0.10 0.03 16 3 C -0.24 -4.88 8.94 23.43 0.21 -4.67 16 4 C 0.54 15.53 7.56 86.57 0.65 16.19 16 5 O -0.58 -21.32 12.77 -4.09 -0.05 -21.37 16 6 N -0.62 -16.21 2.96 -823.61 -2.43 -18.65 16 7 C 0.08 1.53 5.79 86.35 0.50 2.03 16 8 C 0.06 1.37 3.17 30.69 0.10 1.47 16 9 H 0.04 1.23 6.24 -2.39 -0.01 1.21 16 10 C -0.13 -2.16 9.57 71.98 0.69 -1.47 16 11 O -0.36 -11.27 9.90 -148.97 -1.47 -12.75 16 12 C 0.11 3.80 0.80 -10.36 -0.01 3.79 16 13 C -0.11 -3.80 6.21 31.80 0.20 -3.60 16 14 C 0.11 5.00 6.10 86.88 0.53 5.53 16 15 N -0.63 -33.18 3.06 -692.49 -2.12 -35.30 16 16 C -0.25 -15.58 10.58 84.03 0.89 -14.69 16 17 H 0.04 2.84 8.06 -2.91 -0.02 2.82 16 18 C -0.03 -1.91 5.48 84.86 0.47 -1.45 16 19 N -0.96 -63.19 13.97 21.65 0.30 -62.89 16 20 Si 0.97 49.53 24.59 68.60 1.69 51.22 16 21 H -0.27 -12.64 6.77 99.48 0.67 -11.97 16 22 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 23 H -0.26 -12.65 6.96 99.48 0.69 -11.96 16 24 C 0.12 5.60 6.34 86.47 0.55 6.15 16 25 C 0.11 3.15 5.18 85.92 0.45 3.60 16 26 C -0.14 -3.27 4.39 -11.54 -0.05 -3.32 16 27 C -0.16 -2.61 9.78 30.60 0.30 -2.32 16 28 C -0.17 -3.88 10.23 30.59 0.31 -3.57 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.71 6.42 -2.39 -0.02 0.69 16 31 H 0.09 0.64 8.07 -2.38 -0.02 0.62 16 32 H 0.16 1.99 5.98 -2.91 -0.02 1.97 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.12 1.47 5.49 -2.39 -0.01 1.46 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.09 2.96 8.01 -2.38 -0.02 2.94 16 39 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.03 1.47 2.31 -2.38 -0.01 1.46 16 41 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.27 16.49 8.31 -92.71 -0.77 15.72 16 43 H 0.02 1.08 6.03 -2.39 -0.01 1.06 16 44 H 0.02 0.77 7.59 -2.39 -0.02 0.75 16 45 H 0.08 2.78 6.77 -2.39 -0.02 2.76 16 46 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.10 3.03 6.16 -2.39 -0.01 3.01 16 48 H 0.12 1.34 6.34 -2.39 -0.02 1.33 16 49 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -82.76 384.83 3.14 -79.62 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.88 Total: 16.97 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.35 Total: 3.15 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -4.25 Total: -116.84 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.53 Total: -34.12 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 1.69 Total: 51.22 kcal Total: -82.76 3.14 -79.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071144471.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.185 kcal (2) G-P(sol) polarization free energy of solvation -82.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds