Wall clock time and date at job start Tue Mar 31 2020 18:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32993 * 120.00250 * 2 1 4 4 C 1.47101 * 120.00536 * 172.85710 * 3 2 1 5 5 O 1.21613 * 119.99318 * 2.69205 * 4 3 2 6 6 N 1.34773 * 120.00421 * 182.69015 * 4 3 2 7 7 C 1.47164 * 121.07397 * 354.49713 * 6 4 3 8 8 C 1.53281 * 108.56379 * 128.76070 * 7 6 4 9 9 H 1.09003 * 109.51297 * 293.05700 * 8 7 6 10 10 C 1.52998 * 109.50798 * 172.91515 * 8 7 6 11 11 O 1.43115 * 109.23297 * 52.98625 * 8 7 6 12 12 C 1.41886 * 114.36462 * 299.10310 * 11 8 7 13 13 C 1.54373 * 110.71778 * 296.72939 * 12 11 8 14 14 C 1.54461 * 102.86537 * 276.29998 * 13 12 11 15 15 N 1.47079 * 107.30138 * 338.49928 * 14 13 12 16 16 C 1.36936 * 125.63296 * 179.03680 * 15 14 13 17 17 H 1.08003 * 120.00312 * 180.02562 * 16 15 14 18 18 C 1.38815 * 119.99650 * 0.03077 * 16 15 14 19 19 N 1.31612 * 120.00274 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99785 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47225 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47271 * 119.99534 * 20 18 16 23 23 H 1.48499 * 109.47418 * 239.99932 * 20 18 16 24 24 C 1.47577 * 108.74130 * 359.02097 * 15 14 13 25 25 C 1.47326 * 121.08019 * 174.47595 * 6 4 3 26 26 C 1.50701 * 119.99790 * 179.97438 * 2 1 3 27 27 C 1.52994 * 117.50191 * 357.73799 * 26 2 1 28 28 C 1.53004 * 117.50084 * 289.07640 * 26 2 1 29 29 H 1.09002 * 109.47294 * 90.00837 * 1 2 3 30 30 H 1.09001 * 109.47249 * 209.99847 * 1 2 3 31 31 H 1.08997 * 109.47363 * 330.00057 * 1 2 3 32 32 H 1.07999 * 119.99518 * 352.85674 * 3 2 1 33 33 H 1.08999 * 109.62562 * 248.48232 * 7 6 4 34 34 H 1.09006 * 109.62195 * 9.04130 * 7 6 4 35 35 H 1.08995 * 109.47631 * 59.99888 * 10 8 7 36 36 H 1.09003 * 109.47222 * 180.02562 * 10 8 7 37 37 H 1.09009 * 109.47141 * 299.99518 * 10 8 7 38 38 H 1.08999 * 110.73379 * 34.64792 * 13 12 11 39 39 H 1.09001 * 110.73527 * 157.96096 * 13 12 11 40 40 H 1.09009 * 109.87589 * 97.92560 * 14 13 12 41 41 H 1.08996 * 109.87866 * 218.92098 * 14 13 12 42 42 H 0.97004 * 120.00129 * 179.97438 * 19 18 16 43 43 H 1.09001 * 110.37459 * 264.48155 * 24 15 14 44 44 H 1.08993 * 110.37718 * 142.12771 * 24 15 14 45 45 H 1.09005 * 109.67830 * 348.93413 * 25 6 4 46 46 H 1.08998 * 109.68300 * 109.43827 * 25 6 4 47 47 H 1.09000 * 115.54603 * 143.41264 * 26 2 1 48 48 H 1.09000 * 117.50129 * 0.02562 * 27 26 2 49 49 H 1.09004 * 117.49957 * 145.01811 * 27 26 2 50 50 H 1.09001 * 117.49735 * 214.98146 * 28 26 2 51 51 H 1.08996 * 117.49818 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6344 1.1567 0.1584 5 8 4.2406 0.1057 0.2402 6 7 4.3024 2.3260 0.2128 7 6 3.6106 3.6068 -0.0034 8 6 3.9502 4.5471 1.1585 9 1 3.5126 4.1610 2.0792 10 6 3.3880 5.9403 0.8694 11 8 5.3721 4.6256 1.3013 12 6 6.0005 3.3870 1.5914 13 6 5.5251 2.8393 2.9541 14 6 6.4389 3.5757 3.9584 15 7 7.6308 4.0206 3.2204 16 6 8.6774 4.7289 3.7478 17 1 9.5102 5.0099 3.1201 18 6 8.6680 5.0856 5.0893 19 7 7.6530 4.7436 5.8542 20 14 10.0960 6.0512 5.8089 21 1 11.1035 6.3089 4.7489 22 1 9.5993 7.3439 6.3450 23 1 10.7208 5.2680 6.9050 24 6 7.5129 3.5773 1.8178 25 6 5.7486 2.3635 0.4912 26 6 2.2604 -1.3051 0.0006 27 6 1.4393 -2.5949 0.0547 28 6 2.2295 -2.1382 1.2836 29 1 -0.3634 -0.0002 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6382 2.0834 -0.1163 33 1 3.9444 4.0493 -0.9419 34 1 2.5339 3.4402 -0.0367 35 1 2.3056 5.8792 0.7564 36 1 3.6302 6.6086 1.6957 37 1 3.8280 6.3261 -0.0503 38 1 4.4789 3.0913 3.1276 39 1 5.6782 1.7616 3.0116 40 1 5.9158 4.4380 4.3720 41 1 6.7288 2.8982 4.7614 42 1 7.6467 4.9926 6.7917 43 1 8.0400 2.6343 1.6722 44 1 7.9044 4.3398 1.1446 45 1 6.0846 1.3802 0.8207 46 1 6.2886 2.6525 -0.4104 47 1 3.1793 -1.3177 -0.5856 48 1 0.3540 -2.4996 0.0895 49 1 1.8181 -3.4562 -0.4956 50 1 3.1279 -2.6991 1.5412 51 1 1.6646 -1.7421 2.1273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071144472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:56 Heat of formation + Delta-G solvation = -11.857688 kcal Electronic energy + Delta-G solvation = -30494.472914 eV Core-core repulsion = 26588.763997 eV Total energy + Delta-G solvation = -3905.708916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.84106 -40.34398 -38.58672 -37.89553 -35.73616 -34.85868 -34.27345 -32.92130 -31.16056 -30.30252 -28.96969 -27.61455 -27.05283 -25.63265 -24.00120 -23.18495 -23.14725 -22.05705 -21.40276 -20.37621 -19.17359 -18.97437 -18.37057 -17.86371 -17.13197 -16.79760 -16.58047 -16.08554 -15.89981 -15.73447 -15.49683 -15.18960 -15.09755 -14.49002 -14.14035 -14.06046 -14.03545 -13.89688 -13.69059 -13.59022 -13.18888 -13.10784 -13.00257 -12.86514 -12.82405 -12.76478 -12.50574 -12.24543 -12.16356 -12.07953 -11.98591 -11.88012 -11.75504 -11.66459 -11.47606 -11.16963 -10.89791 -10.72934 -10.38733 -9.94266 -9.41089 -8.93128 -7.85829 -5.21857 0.35233 1.44645 1.46472 1.56940 1.88800 2.26559 2.48195 2.62176 3.04354 3.32666 3.42880 3.56228 3.58735 3.66590 3.83893 3.90438 3.92761 4.02441 4.06890 4.13174 4.15931 4.25786 4.35737 4.37844 4.44912 4.53256 4.61323 4.67350 4.72404 4.73472 4.76290 4.79423 4.83646 4.84194 4.93260 4.97241 5.04520 5.08567 5.11713 5.21725 5.24932 5.32424 5.39443 5.41714 5.46306 5.55846 5.65110 5.68460 6.15413 6.38924 6.43704 7.07224 7.19767 7.73432 8.38767 9.25335 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.002996 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.189507 B = 9342.541643 C =10083.692595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.008 3.992 3 C -0.245 4.245 4 C 0.541 3.459 5 O -0.574 6.574 6 N -0.612 5.612 7 C 0.084 3.916 8 C 0.058 3.942 9 H 0.052 0.948 10 C -0.135 4.135 11 O -0.371 6.371 12 C 0.111 3.889 13 C -0.147 4.147 14 C 0.199 3.801 15 N -0.621 5.621 16 C -0.239 4.239 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.982 3.018 21 H -0.264 1.264 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.146 3.854 25 C 0.110 3.890 26 C -0.140 4.140 27 C -0.164 4.164 28 C -0.170 4.170 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.160 0.840 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.008 0.992 41 H 0.004 0.996 42 H 0.246 0.754 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.119 0.881 49 H 0.100 0.900 50 H 0.082 0.918 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.838 -7.445 -16.515 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.006 3.994 3 C -0.265 4.265 4 C 0.335 3.665 5 O -0.456 6.456 6 N -0.344 5.344 7 C -0.038 4.038 8 C 0.000 4.000 9 H 0.070 0.930 10 C -0.192 4.192 11 O -0.291 6.291 12 C 0.069 3.931 13 C -0.186 4.186 14 C 0.074 3.926 15 N -0.347 5.347 16 C -0.368 4.368 17 H 0.103 0.897 18 C -0.262 4.262 19 N -0.603 5.603 20 Si 0.810 3.190 21 H -0.188 1.188 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.020 3.980 25 C -0.014 4.014 26 C -0.158 4.158 27 C -0.200 4.200 28 C -0.207 4.207 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.178 0.822 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.126 0.874 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.027 0.973 41 H 0.022 0.978 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.124 0.876 48 H 0.138 0.862 49 H 0.119 0.881 50 H 0.101 0.899 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.342 -7.722 -16.324 26.462 hybrid contribution 1.254 0.379 1.183 1.765 sum -18.089 -7.344 -15.141 24.706 Atomic orbital electron populations 1.21114 0.88137 1.04544 1.04461 1.22190 0.97095 0.92314 0.87828 1.22494 0.91351 1.00339 1.12318 1.19149 0.89306 0.82317 0.75715 1.90722 1.70940 1.31580 1.52334 1.48145 1.08523 1.07073 1.70672 1.22722 0.99932 0.82340 0.98835 1.22794 0.81386 0.98414 0.97371 0.93037 1.21713 1.02150 0.92814 1.02544 1.87872 1.20523 1.29687 1.91007 1.22051 0.93854 0.84614 0.92544 1.23139 0.99621 0.99440 0.96381 1.20740 0.86050 0.94435 0.91366 1.44715 1.20431 1.64116 1.05428 1.19518 0.97363 1.26458 0.93429 0.89720 1.25700 1.00990 1.02660 0.96815 1.70212 1.32303 1.52161 1.05600 0.84948 0.78465 0.77444 0.78101 1.18791 1.21864 1.21897 1.21528 0.91838 0.98122 0.86522 1.21797 0.82008 0.99567 0.98053 1.21447 1.00866 0.90113 1.03383 1.23245 0.99515 0.96929 1.00342 1.22822 1.02631 1.03190 0.92056 0.88372 0.89880 0.89457 0.82247 0.89127 0.85384 0.87429 0.93376 0.91011 0.90880 0.91663 0.97338 0.97790 0.94485 0.93561 0.92908 0.89569 0.89766 0.87621 0.86246 0.88145 0.89925 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.58 71.23 0.68 -0.45 16 2 C 0.01 0.13 5.80 -17.62 -0.10 0.03 16 3 C -0.24 -4.67 8.97 23.43 0.21 -4.46 16 4 C 0.54 14.87 7.62 86.57 0.66 15.53 16 5 O -0.57 -19.65 12.72 -4.07 -0.05 -19.70 16 6 N -0.61 -16.20 2.95 -822.96 -2.42 -18.63 16 7 C 0.08 1.65 5.83 86.35 0.50 2.15 16 8 C 0.06 1.51 3.19 30.69 0.10 1.61 16 9 H 0.05 1.47 6.22 -2.39 -0.01 1.46 16 10 C -0.13 -2.69 9.57 71.98 0.69 -2.00 16 11 O -0.37 -13.58 9.93 -148.95 -1.48 -15.06 16 12 C 0.11 4.14 0.84 -10.16 -0.01 4.14 16 13 C -0.15 -6.13 5.87 31.56 0.19 -5.94 16 14 C 0.20 10.70 5.38 86.77 0.47 11.17 16 15 N -0.62 -34.02 3.40 -692.77 -2.36 -36.38 16 16 C -0.24 -14.03 10.28 84.03 0.86 -13.16 16 17 H 0.08 4.73 7.83 -2.91 -0.02 4.70 16 18 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 19 N -0.95 -59.89 10.31 21.65 0.22 -59.67 16 20 Si 0.98 47.44 29.55 68.60 2.03 49.47 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 C 0.15 6.37 6.42 86.55 0.56 6.93 16 25 C 0.11 3.43 5.28 86.01 0.45 3.88 16 26 C -0.14 -2.99 4.31 -11.54 -0.05 -3.04 16 27 C -0.16 -2.48 9.82 30.62 0.30 -2.18 16 28 C -0.17 -3.51 10.24 30.62 0.31 -3.19 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.64 6.20 -2.39 -0.01 0.62 16 31 H 0.09 0.58 8.07 -2.39 -0.02 0.56 16 32 H 0.16 1.90 5.90 -2.91 -0.02 1.89 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.13 1.58 5.39 -2.38 -0.01 1.57 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.07 2.84 6.07 -2.39 -0.01 2.82 16 39 H 0.06 2.68 7.83 -2.39 -0.02 2.66 16 40 H 0.01 0.51 7.39 -2.38 -0.02 0.49 16 41 H 0.00 0.23 7.50 -2.39 -0.02 0.22 16 42 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 43 H 0.05 1.94 7.99 -2.39 -0.02 1.92 16 44 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.09 2.96 6.91 -2.38 -0.02 2.95 16 46 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.11 2.93 6.23 -2.39 -0.01 2.92 16 48 H 0.12 1.23 6.21 -2.39 -0.01 1.21 16 49 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 50 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -77.79 390.14 3.15 -74.65 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.92 Total: 17.93 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 6.29 Total: 7.38 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -4.56 Total: -114.67 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -1.53 Total: -34.76 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -77.79 3.15 -74.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071144472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.791 kcal (2) G-P(sol) polarization free energy of solvation -77.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds