Wall clock time and date at job start Tue Mar 31 2020 18:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.51515 * 2 1 4 4 C 1.53281 * 109.51154 * 239.90032 * 2 1 3 5 5 N 1.47168 * 108.55418 * 186.99248 * 4 2 1 6 6 C 1.34779 * 121.07884 * 231.23716 * 5 4 2 7 7 O 1.21280 * 119.99993 * 185.46923 * 6 5 4 8 8 C 1.50698 * 119.99965 * 5.46740 * 6 5 4 9 9 C 1.53007 * 115.54951 * 178.97271 * 8 6 5 10 10 C 1.52996 * 117.49773 * 34.32915 * 9 8 6 11 11 C 1.52998 * 60.03270 * 107.50167 * 10 9 8 12 12 C 1.53001 * 117.51999 * 324.67073 * 8 6 5 13 13 C 1.52996 * 117.50042 * 33.30282 * 8 6 5 14 14 C 1.47330 * 117.84392 * 51.50547 * 5 4 2 15 15 C 1.52775 * 108.21353 * 310.53629 * 14 5 4 16 16 C 1.54361 * 110.33711 * 173.65165 * 15 14 5 17 17 C 1.54471 * 102.87182 * 152.53147 * 16 15 14 18 18 N 1.47084 * 107.29281 * 338.50125 * 17 16 15 19 19 C 1.36944 * 125.62570 * 178.98326 * 18 17 16 20 20 H 1.08001 * 119.99711 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00108 * 0.02850 * 19 18 17 22 22 N 1.31624 * 120.00049 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00023 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46990 * 59.99970 * 23 21 19 25 25 H 1.48495 * 109.47209 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47228 * 300.00075 * 23 21 19 27 27 C 1.47571 * 108.74276 * 359.00868 * 18 17 16 28 28 O 1.41886 * 111.39132 * 50.23024 * 15 14 5 29 29 H 1.09002 * 109.46953 * 180.10334 * 1 2 3 30 30 H 1.09003 * 109.46905 * 300.09949 * 1 2 3 31 31 H 1.08996 * 109.47536 * 60.09865 * 1 2 3 32 32 H 1.08997 * 109.62414 * 67.27430 * 4 2 1 33 33 H 1.08993 * 109.62170 * 306.71044 * 4 2 1 34 34 H 1.08994 * 115.56132 * 248.63585 * 9 8 6 35 35 H 1.09006 * 117.50024 * 0.02562 * 10 9 8 36 36 H 1.08997 * 117.49609 * 215.00191 * 10 9 8 37 37 H 1.08993 * 117.50045 * 107.47864 * 11 10 9 38 38 H 1.09008 * 117.49872 * 252.47398 * 11 10 9 39 39 H 1.08995 * 117.50237 * 214.97250 * 12 8 6 40 40 H 1.09003 * 117.49556 * 359.97438 * 12 8 6 41 41 H 1.08999 * 117.49972 * 359.96969 * 13 8 6 42 42 H 1.08996 * 117.50423 * 145.00013 * 13 8 6 43 43 H 1.09002 * 109.63893 * 70.27594 * 14 5 4 44 44 H 1.08999 * 109.64805 * 190.91265 * 14 5 4 45 45 H 1.08993 * 110.73535 * 270.87312 * 16 15 14 46 46 H 1.08996 * 110.73384 * 34.19095 * 16 15 14 47 47 H 1.09000 * 109.87738 * 97.92647 * 17 16 15 48 48 H 1.09000 * 109.87571 * 219.07974 * 17 16 15 49 49 H 0.97000 * 119.99910 * 179.97438 * 22 21 19 50 50 H 1.08999 * 110.37386 * 264.48951 * 27 18 17 51 51 H 1.08995 * 110.37224 * 142.14133 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 -1.2500 5 7 3.5036 -0.8609 -1.1465 6 6 4.3116 -0.4720 -2.1527 7 8 5.5041 -0.6836 -2.0891 8 6 3.7333 0.2257 -3.3567 9 6 4.7446 0.6440 -4.4260 10 6 5.9531 -0.2669 -4.6502 11 6 4.8325 -0.2142 -5.6905 12 6 2.3461 -0.2135 -3.8298 13 6 2.5247 1.1366 -3.1326 14 6 4.0547 -1.4419 0.0902 15 6 3.4227 -0.7208 1.2795 16 6 3.8445 -1.3958 2.6021 17 6 3.7655 -0.2369 3.6203 18 7 3.8531 1.0195 2.8605 19 6 3.8006 2.2796 3.3940 20 1 3.8737 3.1426 2.7488 21 6 3.6536 2.4478 4.7641 22 7 3.5641 1.3960 5.5504 23 14 3.5828 4.1667 5.4918 24 1 2.4288 4.9015 4.9143 25 1 3.4240 4.0742 6.9654 26 1 4.8397 4.8908 5.1744 27 6 4.0061 0.6979 1.4285 28 8 2.0090 -0.6769 1.1664 29 1 -0.3633 -1.0277 0.0019 30 1 -0.3633 0.5154 0.8891 31 1 -0.3634 0.5123 -0.8908 32 1 1.7903 -0.1448 -2.1380 33 1 1.5857 -1.7124 -1.3130 34 1 4.8965 1.7178 -4.5351 35 1 6.0276 -1.1645 -4.0362 36 1 6.9004 0.2076 -4.9064 37 1 5.0423 0.2953 -6.6309 38 1 4.1701 -1.0771 -5.7609 39 1 2.1539 -0.2045 -4.9026 40 1 1.8517 -1.0077 -3.2702 41 1 2.1475 1.2310 -2.1143 42 1 2.4499 2.0339 -3.7468 43 1 3.8163 -2.5047 0.1335 44 1 5.1359 -1.3047 0.1095 45 1 3.1488 -2.1914 2.8683 46 1 4.8625 -1.7791 2.5321 47 1 2.8182 -0.2798 4.1578 48 1 4.5961 -0.3037 4.3230 49 1 3.4617 1.5135 6.5078 50 1 5.0594 0.7065 1.1481 51 1 3.4444 1.4053 0.8186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071178764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:32 Heat of formation + Delta-G solvation = 59.679484 kcal Electronic energy + Delta-G solvation = -31485.301152 eV Core-core repulsion = 27582.694320 eV Total energy + Delta-G solvation = -3902.606832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.44577 -39.35317 -37.52650 -36.73770 -35.64416 -34.04874 -32.99535 -31.31249 -29.42305 -28.32032 -26.92595 -25.96668 -24.65126 -23.86164 -23.01207 -22.39240 -21.79724 -21.29698 -20.12154 -19.23757 -19.01983 -17.03890 -16.86221 -16.43054 -16.32199 -15.79581 -15.25508 -14.87991 -14.71229 -14.59200 -14.11549 -14.04873 -13.86743 -13.45330 -13.31356 -13.00365 -12.46596 -12.32116 -12.21033 -12.02274 -11.87903 -11.83226 -11.66846 -11.50653 -11.34136 -11.07474 -11.07083 -10.96901 -10.84387 -10.83389 -10.36232 -10.21394 -10.14280 -10.09987 -10.09255 -9.92767 -9.65776 -9.53299 -9.34792 -8.55114 -8.31112 -6.77966 -5.67044 -2.99894 2.36658 2.82947 3.42621 3.46578 3.48041 3.51047 3.75445 3.88976 4.17687 4.23737 4.48160 4.51407 4.60095 4.70189 4.84405 4.92092 5.05548 5.06767 5.09104 5.19645 5.21371 5.24115 5.38645 5.45750 5.48314 5.50815 5.55562 5.60914 5.62492 5.63747 5.67883 5.73127 5.86409 5.89224 5.92279 5.98669 6.06795 6.20127 6.20789 6.23813 6.35799 6.44360 6.50895 6.62681 6.68564 7.38497 7.56990 7.66024 7.73025 7.86770 8.17951 8.29645 9.25692 9.85573 10.51917 11.44725 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.003563 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.676366 B = 7855.988650 C = 8107.440269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.067 0.933 4 C 0.016 3.984 5 N -0.608 5.608 6 C 0.552 3.448 7 O -0.528 6.528 8 C -0.120 4.120 9 C -0.112 4.112 10 C -0.153 4.153 11 C -0.183 4.183 12 C -0.174 4.174 13 C -0.168 4.168 14 C 0.099 3.901 15 C 0.093 3.907 16 C -0.130 4.130 17 C 0.183 3.817 18 N -0.599 5.599 19 C -0.227 4.227 20 H 0.075 0.925 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.122 3.878 28 O -0.347 6.347 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.143 0.857 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.043 0.957 49 H 0.252 0.748 50 H 0.024 0.976 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 -5.966 -20.873 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.106 4.106 5 N -0.341 5.341 6 C 0.340 3.660 7 O -0.404 6.404 8 C -0.123 4.123 9 C -0.131 4.131 10 C -0.190 4.190 11 C -0.220 4.220 12 C -0.211 4.211 13 C -0.204 4.204 14 C -0.023 4.023 15 C 0.051 3.949 16 C -0.169 4.169 17 C 0.059 3.941 18 N -0.325 5.325 19 C -0.355 4.355 20 H 0.092 0.908 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.004 4.004 28 O -0.266 6.266 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.160 0.840 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.042 0.958 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.339 -6.071 -20.459 21.777 hybrid contribution 0.078 1.055 0.361 1.117 sum -4.261 -5.016 -20.098 21.148 Atomic orbital electron populations 1.21700 0.92554 1.02842 1.02854 1.22468 0.95221 0.96188 0.85041 0.91522 1.24119 0.80557 1.03014 1.02877 1.48060 1.06644 1.62543 1.16828 1.19435 0.86119 0.77995 0.82428 1.90653 1.15001 1.55870 1.78905 1.20944 0.89976 1.04857 0.96563 1.21322 0.99154 0.97398 0.95207 1.23036 0.92481 1.02642 1.00802 1.23059 1.03655 1.02213 0.93058 1.23728 0.96497 0.98579 1.02250 1.23602 0.98870 0.94744 1.03232 1.22262 1.00547 0.97039 0.82463 1.22409 0.81270 0.96971 0.94211 1.22848 1.00118 0.99989 0.93932 1.21154 1.01172 0.81277 0.90528 1.44408 1.86020 1.02507 0.99540 1.18971 1.43265 0.82534 0.90773 0.90760 1.24773 1.02198 0.97345 0.95977 1.69951 1.56371 1.27036 1.03488 0.86208 0.77849 0.83656 0.78098 1.21235 1.21568 1.21218 1.21902 0.97028 0.92970 0.88542 1.87835 1.20074 1.76516 1.42148 0.91870 0.90986 0.91226 0.84035 0.90872 0.87271 0.87190 0.89106 0.88926 0.88947 0.87306 0.86406 0.86409 0.87173 0.91113 0.88102 0.90905 0.90902 0.93178 0.93837 0.93732 0.95824 0.94422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.57 37.16 0.36 -1.24 16 2 C 0.07 0.98 2.85 -26.59 -0.08 0.90 16 3 H 0.07 1.05 5.73 -51.93 -0.30 0.76 16 4 C 0.02 0.18 3.44 -3.53 -0.01 0.17 16 5 N -0.61 -8.57 2.95 -172.45 -0.51 -9.08 16 6 C 0.55 8.09 7.39 -10.99 -0.08 8.00 16 7 O -0.53 -9.31 13.29 5.56 0.07 -9.24 16 8 C -0.12 -1.33 2.40 -155.66 -0.37 -1.70 16 9 C -0.11 -1.19 5.74 -90.58 -0.52 -1.71 16 10 C -0.15 -1.73 9.09 -26.73 -0.24 -1.98 16 11 C -0.18 -1.61 9.76 -26.69 -0.26 -1.87 16 12 C -0.17 -1.36 8.53 -26.73 -0.23 -1.59 16 13 C -0.17 -1.48 9.03 -26.73 -0.24 -1.72 16 14 C 0.10 1.58 5.31 -3.70 -0.02 1.56 16 15 C 0.09 1.72 0.83 -89.44 -0.07 1.64 16 16 C -0.13 -2.52 6.12 -25.25 -0.15 -2.68 16 17 C 0.18 4.59 5.38 -2.95 -0.02 4.58 16 18 N -0.60 -15.83 3.40 -170.31 -0.58 -16.41 16 19 C -0.23 -6.52 10.28 -15.06 -0.15 -6.67 16 20 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -27.50 10.31 55.49 0.57 -26.93 16 23 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.12 2.69 6.19 -2.87 -0.02 2.67 16 28 O -0.35 -6.35 9.92 -35.22 -0.35 -6.70 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.14 1.28 1.69 -56.02 -0.09 1.18 16 33 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.11 1.49 6.25 -51.93 -0.32 1.17 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.77 7.80 -51.92 -0.41 0.36 16 39 H 0.11 0.68 7.80 -51.93 -0.40 0.28 16 40 H 0.12 0.87 5.37 -51.93 -0.28 0.59 16 41 H 0.12 1.13 4.90 -51.93 -0.25 0.88 16 42 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.10 1.72 6.91 -51.93 -0.36 1.36 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.07 1.28 8.00 -51.93 -0.42 0.86 16 47 H 0.05 1.40 7.38 -51.93 -0.38 1.01 16 48 H 0.04 1.19 7.50 -51.93 -0.39 0.80 16 49 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.02 0.55 7.83 -51.93 -0.41 0.14 16 51 H 0.04 0.83 6.10 -51.93 -0.32 0.51 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -33.42 378.92 -10.42 -43.84 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.10 Total: 3.25 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.21 Total: -1.92 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.52 Total: -52.42 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.28 Total: -15.94 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.42 -10.42 -43.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071178764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.519 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds