Wall clock time and date at job start Tue Mar 31 2020 18:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.51515 * 2 1 4 4 C 1.53281 * 109.51154 * 239.90032 * 2 1 3 5 5 N 1.47168 * 108.55418 * 186.99248 * 4 2 1 6 6 C 1.34779 * 121.07884 * 231.23716 * 5 4 2 7 7 O 1.21280 * 119.99993 * 185.46923 * 6 5 4 8 8 C 1.50698 * 119.99965 * 5.46740 * 6 5 4 9 9 C 1.53007 * 115.54951 * 178.97271 * 8 6 5 10 10 C 1.52996 * 117.49773 * 34.32915 * 9 8 6 11 11 C 1.52998 * 60.03270 * 107.50167 * 10 9 8 12 12 C 1.53001 * 117.51999 * 324.67073 * 8 6 5 13 13 C 1.52996 * 117.50042 * 33.30282 * 8 6 5 14 14 C 1.47330 * 117.84392 * 51.50547 * 5 4 2 15 15 C 1.52775 * 108.21353 * 310.53629 * 14 5 4 16 16 C 1.54361 * 110.33711 * 173.65165 * 15 14 5 17 17 C 1.54471 * 102.87182 * 152.53147 * 16 15 14 18 18 N 1.47084 * 107.29281 * 338.50125 * 17 16 15 19 19 C 1.36944 * 125.62570 * 178.98326 * 18 17 16 20 20 H 1.08001 * 119.99711 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00108 * 0.02850 * 19 18 17 22 22 N 1.31624 * 120.00049 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00023 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46990 * 59.99970 * 23 21 19 25 25 H 1.48495 * 109.47209 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47228 * 300.00075 * 23 21 19 27 27 C 1.47571 * 108.74276 * 359.00868 * 18 17 16 28 28 O 1.41886 * 111.39132 * 50.23024 * 15 14 5 29 29 H 1.09002 * 109.46953 * 180.10334 * 1 2 3 30 30 H 1.09003 * 109.46905 * 300.09949 * 1 2 3 31 31 H 1.08996 * 109.47536 * 60.09865 * 1 2 3 32 32 H 1.08997 * 109.62414 * 67.27430 * 4 2 1 33 33 H 1.08993 * 109.62170 * 306.71044 * 4 2 1 34 34 H 1.08994 * 115.56132 * 248.63585 * 9 8 6 35 35 H 1.09006 * 117.50024 * 0.02562 * 10 9 8 36 36 H 1.08997 * 117.49609 * 215.00191 * 10 9 8 37 37 H 1.08993 * 117.50045 * 107.47864 * 11 10 9 38 38 H 1.09008 * 117.49872 * 252.47398 * 11 10 9 39 39 H 1.08995 * 117.50237 * 214.97250 * 12 8 6 40 40 H 1.09003 * 117.49556 * 359.97438 * 12 8 6 41 41 H 1.08999 * 117.49972 * 359.96969 * 13 8 6 42 42 H 1.08996 * 117.50423 * 145.00013 * 13 8 6 43 43 H 1.09002 * 109.63893 * 70.27594 * 14 5 4 44 44 H 1.08999 * 109.64805 * 190.91265 * 14 5 4 45 45 H 1.08993 * 110.73535 * 270.87312 * 16 15 14 46 46 H 1.08996 * 110.73384 * 34.19095 * 16 15 14 47 47 H 1.09000 * 109.87738 * 97.92647 * 17 16 15 48 48 H 1.09000 * 109.87571 * 219.07974 * 17 16 15 49 49 H 0.97000 * 119.99910 * 179.97438 * 22 21 19 50 50 H 1.08999 * 110.37386 * 264.48951 * 27 18 17 51 51 H 1.08995 * 110.37224 * 142.14133 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 -1.2500 5 7 3.5036 -0.8609 -1.1465 6 6 4.3116 -0.4720 -2.1527 7 8 5.5041 -0.6836 -2.0891 8 6 3.7333 0.2257 -3.3567 9 6 4.7446 0.6440 -4.4260 10 6 5.9531 -0.2669 -4.6502 11 6 4.8325 -0.2142 -5.6905 12 6 2.3461 -0.2135 -3.8298 13 6 2.5247 1.1366 -3.1326 14 6 4.0547 -1.4419 0.0902 15 6 3.4227 -0.7208 1.2795 16 6 3.8445 -1.3958 2.6021 17 6 3.7655 -0.2369 3.6203 18 7 3.8531 1.0195 2.8605 19 6 3.8006 2.2796 3.3940 20 1 3.8737 3.1426 2.7488 21 6 3.6536 2.4478 4.7641 22 7 3.5641 1.3960 5.5504 23 14 3.5828 4.1667 5.4918 24 1 2.4288 4.9015 4.9143 25 1 3.4240 4.0742 6.9654 26 1 4.8397 4.8908 5.1744 27 6 4.0061 0.6979 1.4285 28 8 2.0090 -0.6769 1.1664 29 1 -0.3633 -1.0277 0.0019 30 1 -0.3633 0.5154 0.8891 31 1 -0.3634 0.5123 -0.8908 32 1 1.7903 -0.1448 -2.1380 33 1 1.5857 -1.7124 -1.3130 34 1 4.8965 1.7178 -4.5351 35 1 6.0276 -1.1645 -4.0362 36 1 6.9004 0.2076 -4.9064 37 1 5.0423 0.2953 -6.6309 38 1 4.1701 -1.0771 -5.7609 39 1 2.1539 -0.2045 -4.9026 40 1 1.8517 -1.0077 -3.2702 41 1 2.1475 1.2310 -2.1143 42 1 2.4499 2.0339 -3.7468 43 1 3.8163 -2.5047 0.1335 44 1 5.1359 -1.3047 0.1095 45 1 3.1488 -2.1914 2.8683 46 1 4.8625 -1.7791 2.5321 47 1 2.8182 -0.2798 4.1578 48 1 4.5961 -0.3037 4.3230 49 1 3.4617 1.5135 6.5078 50 1 5.0594 0.7065 1.1481 51 1 3.4444 1.4053 0.8186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071178764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:31 Heat of formation + Delta-G solvation = 38.955653 kcal Electronic energy + Delta-G solvation = -31486.199805 eV Core-core repulsion = 27582.694320 eV Total energy + Delta-G solvation = -3903.505485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.48663 -40.64758 -38.56046 -38.09931 -36.85010 -35.19198 -34.65710 -32.92939 -31.15440 -29.91810 -27.90204 -27.67360 -25.99115 -25.16653 -23.72159 -23.33290 -22.95327 -22.39544 -21.92884 -20.47745 -20.10684 -19.02188 -18.00753 -17.69938 -17.35907 -16.80646 -16.71783 -16.36520 -16.05665 -15.73911 -15.52089 -15.41223 -15.09788 -15.07676 -14.47344 -14.20299 -13.99200 -13.67650 -13.57337 -13.22710 -13.13990 -12.99977 -12.82313 -12.72085 -12.53131 -12.49163 -12.25210 -12.15647 -12.11605 -12.05697 -12.02142 -11.91755 -11.82950 -11.71760 -11.32703 -10.97063 -10.86795 -10.78476 -10.72587 -10.41043 -9.53153 -8.94559 -7.88320 -5.24699 1.37506 1.41738 1.45912 1.52359 1.76841 2.45533 2.61075 2.72816 2.96823 3.28868 3.34098 3.44351 3.49047 3.58665 3.69911 3.77296 3.82788 3.89613 3.97804 4.04131 4.12227 4.19279 4.30927 4.31879 4.35840 4.49618 4.51169 4.56003 4.59332 4.65715 4.67812 4.76110 4.77399 4.85632 4.88889 4.90964 4.97199 5.01259 5.07395 5.08388 5.11073 5.26388 5.29015 5.32964 5.36450 5.39184 5.59544 5.71133 6.13971 6.31428 6.36259 7.05362 7.09003 7.70896 8.36342 9.21912 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.003563 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.676366 B = 7855.988650 C = 8107.440269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.060 3.940 3 H 0.043 0.957 4 C 0.023 3.977 5 N -0.611 5.611 6 C 0.542 3.458 7 O -0.568 6.568 8 C -0.146 4.146 9 C -0.119 4.119 10 C -0.179 4.179 11 C -0.152 4.152 12 C -0.147 4.147 13 C -0.164 4.164 14 C 0.108 3.892 15 C 0.109 3.891 16 C -0.120 4.120 17 C 0.192 3.808 18 N -0.619 5.619 19 C -0.249 4.249 20 H 0.076 0.924 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.981 3.019 24 H -0.275 1.275 25 H -0.290 1.290 26 H -0.278 1.278 27 C 0.123 3.877 28 O -0.369 6.369 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.108 0.892 32 H 0.172 0.828 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.130 0.870 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.013 0.987 48 H 0.009 0.991 49 H 0.248 0.752 50 H 0.012 0.988 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.958 -5.988 -24.047 25.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.002 3.998 3 H 0.061 0.939 4 C -0.097 4.097 5 N -0.343 5.343 6 C 0.333 3.667 7 O -0.448 6.448 8 C -0.149 4.149 9 C -0.138 4.138 10 C -0.216 4.216 11 C -0.189 4.189 12 C -0.183 4.183 13 C -0.200 4.200 14 C -0.016 4.016 15 C 0.068 3.932 16 C -0.158 4.158 17 C 0.068 3.932 18 N -0.345 5.345 19 C -0.378 4.378 20 H 0.093 0.907 21 C -0.255 4.255 22 N -0.597 5.597 23 Si 0.808 3.192 24 H -0.201 1.201 25 H -0.216 1.216 26 H -0.204 1.204 27 C -0.003 4.003 28 O -0.289 6.289 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.188 0.812 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.127 0.873 42 H 0.148 0.852 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.031 0.969 48 H 0.028 0.972 49 H 0.058 0.942 50 H 0.029 0.971 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.466 -6.092 -23.673 25.285 hybrid contribution 0.751 1.100 1.343 1.892 sum -5.715 -4.992 -22.330 23.584 Atomic orbital electron populations 1.21735 0.90081 1.03956 1.03581 1.22780 0.97116 0.94983 0.84900 0.93873 1.24337 0.78728 1.04326 1.02347 1.48163 1.07862 1.62288 1.16013 1.20180 0.85764 0.77439 0.83332 1.90637 1.16846 1.57381 1.79904 1.20900 0.91443 1.06944 0.95616 1.21405 0.98543 0.97580 0.96250 1.22927 0.93524 1.02263 1.02868 1.23129 1.01210 1.01746 0.92766 1.23886 0.92770 0.97761 1.03896 1.23684 0.96819 0.96173 1.03345 1.22007 0.99353 0.97865 0.82369 1.22120 0.81916 0.94330 0.94868 1.22737 1.01993 0.98218 0.92866 1.20872 0.97727 0.83219 0.91429 1.44698 1.85866 1.02358 1.01599 1.19349 1.43319 0.83756 0.91391 0.90659 1.25663 1.02088 1.01432 0.96293 1.70184 1.57073 1.29091 1.03305 0.85129 0.78220 0.78929 0.76908 1.20068 1.21603 1.20418 1.21980 0.96439 0.95635 0.86197 1.87810 1.19373 1.76992 1.44689 0.90512 0.93406 0.87373 0.81198 0.88723 0.86975 0.89920 0.89272 0.86926 0.87900 0.84675 0.85433 0.87321 0.85227 0.88890 0.89801 0.88954 0.89035 0.96875 0.97237 0.94237 0.97059 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.57 71.98 0.69 -2.03 16 2 C 0.06 1.61 2.85 30.69 0.09 1.70 16 3 H 0.04 1.36 5.73 -2.38 -0.01 1.34 16 4 C 0.02 0.46 3.44 86.35 0.30 0.76 16 5 N -0.61 -16.43 2.95 -817.89 -2.41 -18.84 16 6 C 0.54 15.51 7.39 87.66 0.65 16.16 16 7 O -0.57 -20.59 13.29 -3.03 -0.04 -20.63 16 8 C -0.15 -2.88 2.40 -52.93 -0.13 -3.01 16 9 C -0.12 -2.31 5.74 -10.77 -0.06 -2.37 16 10 C -0.18 -4.00 9.09 30.59 0.28 -3.72 16 11 C -0.15 -2.23 9.76 30.62 0.30 -1.93 16 12 C -0.15 -1.62 8.53 30.60 0.26 -1.36 16 13 C -0.16 -2.32 9.03 30.59 0.28 -2.04 16 14 C 0.11 3.34 5.31 86.15 0.46 3.80 16 15 C 0.11 4.06 0.83 -10.03 -0.01 4.05 16 16 C -0.12 -4.70 6.12 31.56 0.19 -4.51 16 17 C 0.19 10.14 5.38 86.77 0.47 10.61 16 18 N -0.62 -34.21 3.40 -692.73 -2.36 -36.57 16 19 C -0.25 -14.82 10.28 84.03 0.86 -13.96 16 20 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 21 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 22 N -0.95 -58.96 10.31 21.65 0.22 -58.74 16 23 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 24 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 27 C 0.12 5.62 6.19 86.55 0.54 6.16 16 28 O -0.37 -13.33 9.92 -148.95 -1.48 -14.81 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.17 2.41 1.69 -6.23 -0.01 2.40 16 33 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 34 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.33 6.25 -2.38 -0.01 2.31 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.10 1.31 7.80 -2.38 -0.02 1.29 16 39 H 0.14 0.88 7.80 -2.39 -0.02 0.87 16 40 H 0.13 1.20 5.37 -2.39 -0.01 1.19 16 41 H 0.11 1.78 4.90 -2.39 -0.01 1.77 16 42 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 2.92 6.91 -2.39 -0.02 2.90 16 45 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.09 3.23 8.00 -2.39 -0.02 3.21 16 47 H 0.01 0.77 7.38 -2.39 -0.02 0.75 16 48 H 0.01 0.55 7.50 -2.39 -0.02 0.53 16 49 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 50 H 0.01 0.56 7.83 -2.39 -0.02 0.54 16 51 H 0.04 1.61 6.10 -2.39 -0.01 1.60 16 Total: -1.00 -78.42 378.92 2.51 -75.91 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.93 Total: 19.32 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.62 Total: 5.11 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -4.55 Total: -114.14 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.52 Total: -35.44 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -78.42 2.51 -75.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071178764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.862 kcal (2) G-P(sol) polarization free energy of solvation -78.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds