Wall clock time and date at job start Tue Mar 31 2020 18:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.51246 * 2 1 4 4 C 1.53289 * 109.50873 * 239.90649 * 2 1 3 5 5 N 1.47188 * 108.69528 * 187.10053 * 4 2 1 6 6 C 1.34774 * 121.06038 * 231.20358 * 5 4 2 7 7 O 1.21280 * 120.00204 * 354.91392 * 6 5 4 8 8 C 1.50699 * 120.00039 * 174.90940 * 6 5 4 9 9 H 1.08998 * 110.67561 * 326.20701 * 8 6 5 10 10 C 1.54891 * 110.75410 * 89.44264 * 8 6 5 11 11 C 1.54469 * 104.10079 * 156.10562 * 10 8 6 12 12 H 1.09005 * 117.59603 * 116.94244 * 11 10 8 13 13 C 1.55468 * 118.47784 * 273.01939 * 11 10 8 14 14 C 1.53001 * 59.83866 * 93.30555 * 13 11 10 15 15 H 1.09004 * 119.29927 * 111.71315 * 14 13 11 16 16 C 1.54264 * 118.20162 * 265.85325 * 14 13 11 17 17 C 1.47719 * 117.63199 * 51.02482 * 5 4 2 18 18 C 1.52507 * 108.47366 * 310.69470 * 17 5 4 19 19 C 1.54519 * 110.05787 * 287.99759 * 18 17 5 20 20 C 1.55023 * 101.51108 * 206.92041 * 19 18 17 21 21 N 1.47469 * 104.91212 * 36.36857 * 20 19 18 22 22 C 1.36944 * 125.65974 * 155.97294 * 21 20 19 23 23 H 1.08000 * 119.99703 * 180.02562 * 22 21 20 24 24 C 1.38811 * 119.99991 * 0.02562 * 22 21 20 25 25 N 1.31624 * 119.99772 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00052 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47156 * 59.99978 * 26 24 22 28 28 H 1.48501 * 109.47219 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.46907 * 300.00070 * 26 24 22 30 30 C 1.47189 * 108.68093 * 335.97090 * 21 20 19 31 31 O 1.42070 * 111.10721 * 50.50950 * 18 17 5 32 32 H 1.08996 * 109.46728 * 180.09708 * 1 2 3 33 33 H 1.08996 * 109.46928 * 300.09218 * 1 2 3 34 34 H 1.08993 * 109.46823 * 60.09002 * 1 2 3 35 35 H 1.09001 * 109.62706 * 306.91215 * 4 2 1 36 36 H 1.08997 * 109.62802 * 67.28935 * 4 2 1 37 37 H 1.08995 * 110.48953 * 274.93602 * 10 8 6 38 38 H 1.08999 * 110.48725 * 37.58064 * 10 8 6 39 39 H 1.09000 * 118.05975 * 346.17379 * 13 11 10 40 40 H 1.08993 * 117.16676 * 200.83642 * 13 11 10 41 41 H 1.09008 * 110.48595 * 330.32184 * 16 14 13 42 42 H 1.09000 * 110.48905 * 207.67866 * 16 14 13 43 43 H 1.08990 * 109.61746 * 190.95287 * 17 5 4 44 44 H 1.09001 * 109.67767 * 70.46879 * 17 5 4 45 45 H 1.08993 * 111.01515 * 324.97467 * 19 18 17 46 46 H 1.08995 * 111.01894 * 88.82350 * 19 18 17 47 47 H 1.09005 * 110.34672 * 155.23177 * 20 19 18 48 48 H 1.09000 * 110.34934 * 277.50695 * 20 19 18 49 49 H 0.97000 * 119.99771 * 180.02562 * 25 24 22 50 50 H 1.08994 * 109.91411 * 242.15281 * 30 21 20 51 51 H 1.09005 * 109.90967 * 120.88156 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7245 -1.2501 5 7 3.5036 -0.8649 -1.1487 6 6 4.3109 -0.4777 -2.1560 7 8 3.8333 -0.0910 -3.2016 8 6 5.8072 -0.5250 -1.9832 9 1 6.0828 -0.3026 -0.9523 10 6 6.3664 -1.9032 -2.4157 11 6 7.8412 -1.6153 -2.7738 12 1 8.6106 -2.1057 -2.1774 13 6 8.1760 -1.1504 -4.2191 14 6 7.9283 -0.1180 -3.1174 15 1 8.7571 0.4968 -2.7664 16 6 6.5041 0.4536 -2.9609 17 6 4.0518 -1.4407 0.0963 18 6 3.4235 -0.7155 1.2817 19 6 3.9922 0.7172 1.3885 20 6 3.8337 1.0008 2.9043 21 7 4.1109 -0.2892 3.5627 22 6 4.5419 -0.4509 4.8525 23 1 4.7174 -1.4424 5.2429 24 6 4.7531 0.6597 5.6580 25 7 4.5386 1.8681 5.1823 26 14 5.3416 0.4392 7.4172 27 1 6.6527 -0.2582 7.4168 28 1 5.4883 1.7696 8.0605 29 1 4.3512 -0.3690 8.1728 30 6 3.8475 -1.3743 2.6037 31 8 2.0080 -0.6775 1.1664 32 1 -0.3632 -1.0276 0.0017 33 1 -0.3633 0.5152 0.8891 34 1 -0.3633 0.5124 -0.8907 35 1 1.5830 -1.7110 -1.3153 36 1 1.7906 -0.1445 -2.1381 37 1 6.3023 -2.6159 -1.5937 38 1 5.8294 -2.2760 -3.2879 39 1 7.4082 -1.2626 -4.9846 40 1 9.2024 -1.2852 -4.5600 41 1 5.9894 0.4640 -3.9217 42 1 6.5401 1.4566 -2.5356 43 1 5.1334 -1.3076 0.1158 44 1 3.8116 -2.5027 0.1463 45 1 5.0411 0.7444 1.0933 46 1 3.4032 1.4168 0.7955 47 1 4.5535 1.7534 3.2264 48 1 2.8176 1.3282 3.1244 49 1 4.6866 2.6441 5.7451 50 1 3.0450 -2.0114 2.9752 51 1 4.7522 -1.9631 2.4516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071201996.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:54 Heat of formation + Delta-G solvation = -15.452922 kcal Electronic energy + Delta-G solvation = -30976.688142 eV Core-core repulsion = 27070.823324 eV Total energy + Delta-G solvation = -3905.864818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.91364 -39.62965 -38.20355 -36.27689 -34.75041 -33.17829 -32.02165 -31.30488 -29.31141 -28.50846 -28.46278 -26.85883 -25.66764 -23.91627 -23.41329 -21.84859 -20.97990 -20.17756 -19.87231 -19.51115 -18.72259 -17.41612 -17.08417 -16.67143 -16.35572 -15.79594 -15.24685 -14.83379 -14.78124 -14.28407 -14.18407 -13.58214 -13.49470 -13.46363 -13.27770 -13.18081 -12.87994 -12.58459 -12.37083 -12.21641 -11.98950 -11.77379 -11.71381 -11.59392 -11.44909 -11.31003 -11.18663 -11.06251 -10.94023 -10.88690 -10.56371 -10.31633 -10.18197 -10.12175 -10.04556 -9.89002 -9.66178 -9.60636 -9.51986 -8.66893 -8.39031 -6.87020 -5.67134 -3.09276 2.51014 2.83948 3.39516 3.41353 3.43767 3.45146 3.82083 4.12633 4.43614 4.45711 4.55854 4.66893 4.75645 4.89287 4.94866 4.99488 5.05197 5.11330 5.16880 5.19047 5.25091 5.31219 5.42171 5.45625 5.46462 5.52631 5.56356 5.57125 5.63958 5.68475 5.74093 5.75129 5.87497 5.92035 5.96009 6.00065 6.02791 6.12023 6.13729 6.17911 6.37392 6.43473 6.46557 6.56651 6.63143 7.31203 7.50941 7.57452 7.62646 7.82415 8.10267 8.32091 9.19025 9.79488 10.43993 11.36746 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.003790 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.616571 B = 7385.865441 C = 9094.335694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.066 0.934 4 C 0.084 3.916 5 N -0.610 5.610 6 C 0.529 3.471 7 O -0.546 6.546 8 C -0.116 4.116 9 H 0.103 0.897 10 C -0.079 4.079 11 C -0.167 4.167 12 H 0.114 0.886 13 C -0.154 4.154 14 C -0.161 4.161 15 H 0.111 0.889 16 C -0.080 4.080 17 C 0.091 3.909 18 C 0.095 3.905 19 C -0.167 4.167 20 C 0.160 3.840 21 N -0.601 5.601 22 C -0.224 4.224 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.922 5.922 26 Si 0.915 3.085 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.153 3.847 31 O -0.352 6.352 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.106 0.894 48 H 0.014 0.986 49 H 0.253 0.747 50 H 0.037 0.963 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.538 -5.749 -16.998 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.084 0.916 4 C -0.039 4.039 5 N -0.343 5.343 6 C 0.318 3.682 7 O -0.424 6.424 8 C -0.138 4.138 9 H 0.121 0.879 10 C -0.117 4.117 11 C -0.185 4.185 12 H 0.132 0.868 13 C -0.191 4.191 14 C -0.179 4.179 15 H 0.129 0.871 16 C -0.118 4.118 17 C -0.032 4.032 18 C 0.054 3.946 19 C -0.205 4.205 20 C 0.036 3.964 21 N -0.327 5.327 22 C -0.352 4.352 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.570 5.570 26 Si 0.746 3.254 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.027 3.973 31 O -0.271 6.271 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.124 0.876 48 H 0.033 0.967 49 H 0.063 0.937 50 H 0.055 0.945 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.206 -5.490 -17.216 18.110 hybrid contribution 0.402 -0.001 0.908 0.993 sum 1.607 -5.491 -16.308 17.282 Atomic orbital electron populations 1.21685 0.92451 1.02954 1.02715 1.22472 0.95311 0.96131 0.84984 0.91584 1.22341 0.79921 1.01771 0.99838 1.48298 1.06762 1.62415 1.16784 1.20442 0.88841 0.76160 0.82760 1.90651 1.76991 1.47784 1.26960 1.22541 0.91084 0.97741 1.02390 0.87851 1.21870 0.93436 0.94888 1.01526 1.23617 0.97339 0.98630 0.98956 0.86758 1.23446 1.02258 1.02179 0.91197 1.23242 0.98536 0.91981 1.04140 0.87077 1.21854 0.92447 0.97749 0.99728 1.22474 0.99704 0.97937 0.83095 1.22270 0.81139 0.96623 0.94544 1.23520 0.99831 0.95145 1.02051 1.21882 1.00038 0.90051 0.84451 1.44489 1.78297 1.00345 1.09613 1.19020 1.36930 0.93066 0.86163 0.90411 1.24780 1.01893 0.95221 0.98597 1.69790 1.55005 0.97039 1.35174 0.86143 0.78567 0.76649 0.84069 1.21129 1.21584 1.21191 1.21063 0.97261 0.92044 0.86931 1.87918 1.20218 1.76707 1.42252 0.91769 0.91173 0.91174 0.90937 0.88574 0.90374 0.90926 0.88844 0.88406 0.89753 0.90761 0.88465 0.90554 0.91611 0.91980 0.87624 0.96749 0.93666 0.94510 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.57 37.16 0.36 -1.27 16 2 C 0.07 0.99 3.17 -26.58 -0.08 0.90 16 3 H 0.07 1.01 6.13 -51.93 -0.32 0.69 16 4 C 0.08 1.10 5.88 -3.52 -0.02 1.08 16 5 N -0.61 -8.31 2.93 -172.27 -0.51 -8.82 16 6 C 0.53 7.43 6.90 -10.99 -0.08 7.35 16 7 O -0.55 -9.11 15.30 5.56 0.09 -9.02 16 8 C -0.12 -1.35 2.36 -89.78 -0.21 -1.56 16 9 H 0.10 1.20 6.45 -51.93 -0.34 0.87 16 10 C -0.08 -0.80 6.11 -24.96 -0.15 -0.95 16 11 C -0.17 -1.53 7.03 -88.08 -0.62 -2.15 16 12 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 13 C -0.15 -1.32 10.22 -25.42 -0.26 -1.58 16 14 C -0.16 -1.54 6.85 -89.50 -0.61 -2.15 16 15 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.08 -0.90 5.91 -25.07 -0.15 -1.05 16 17 C 0.09 1.24 5.08 -3.63 -0.02 1.22 16 18 C 0.10 1.63 0.83 -89.73 -0.07 1.56 16 19 C -0.17 -3.12 5.91 -24.87 -0.15 -3.27 16 20 C 0.16 3.88 5.88 -2.44 -0.01 3.86 16 21 N -0.60 -15.10 3.40 -170.23 -0.58 -15.67 16 22 C -0.22 -6.11 10.28 -15.06 -0.15 -6.27 16 23 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 24 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 25 N -0.92 -26.56 10.09 55.49 0.56 -26.00 16 26 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 30 C 0.15 3.10 6.62 -3.32 -0.02 3.08 16 31 O -0.35 -6.17 9.87 -35.23 -0.35 -6.51 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 1.27 7.11 -51.93 -0.37 0.90 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.05 7.23 -51.92 -0.38 0.68 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.10 1.21 5.41 -51.93 -0.28 0.93 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 1.17 7.86 -51.93 -0.41 0.77 16 46 H 0.06 1.12 5.98 -51.93 -0.31 0.81 16 47 H 0.11 2.86 5.88 -51.93 -0.31 2.55 16 48 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 50 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 51 H 0.04 0.71 7.79 -51.93 -0.40 0.31 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -31.31 386.36 -10.91 -42.22 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -8.56 Total: 2.82 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.36 Total: -1.55 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.52 Total: -50.50 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.26 Total: -15.53 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.31 -10.91 -42.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071201996.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.766 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds