Wall clock time and date at job start Tue Mar 31 2020 18:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.51246 * 2 1 4 4 C 1.53289 * 109.50873 * 239.90649 * 2 1 3 5 5 N 1.47188 * 108.69528 * 187.10053 * 4 2 1 6 6 C 1.34774 * 121.06038 * 231.20358 * 5 4 2 7 7 O 1.21280 * 120.00204 * 354.91392 * 6 5 4 8 8 C 1.50699 * 120.00039 * 174.90940 * 6 5 4 9 9 H 1.08998 * 110.67561 * 326.20701 * 8 6 5 10 10 C 1.54891 * 110.75410 * 89.44264 * 8 6 5 11 11 C 1.54469 * 104.10079 * 156.10562 * 10 8 6 12 12 H 1.09005 * 117.59603 * 116.94244 * 11 10 8 13 13 C 1.55468 * 118.47784 * 273.01939 * 11 10 8 14 14 C 1.53001 * 59.83866 * 93.30555 * 13 11 10 15 15 H 1.09004 * 119.29927 * 111.71315 * 14 13 11 16 16 C 1.54264 * 118.20162 * 265.85325 * 14 13 11 17 17 C 1.47719 * 117.63199 * 51.02482 * 5 4 2 18 18 C 1.52507 * 108.47366 * 310.69470 * 17 5 4 19 19 C 1.54519 * 110.05787 * 287.99759 * 18 17 5 20 20 C 1.55023 * 101.51108 * 206.92041 * 19 18 17 21 21 N 1.47469 * 104.91212 * 36.36857 * 20 19 18 22 22 C 1.36944 * 125.65974 * 155.97294 * 21 20 19 23 23 H 1.08000 * 119.99703 * 180.02562 * 22 21 20 24 24 C 1.38811 * 119.99991 * 0.02562 * 22 21 20 25 25 N 1.31624 * 119.99772 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00052 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47156 * 59.99978 * 26 24 22 28 28 H 1.48501 * 109.47219 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.46907 * 300.00070 * 26 24 22 30 30 C 1.47189 * 108.68093 * 335.97090 * 21 20 19 31 31 O 1.42070 * 111.10721 * 50.50950 * 18 17 5 32 32 H 1.08996 * 109.46728 * 180.09708 * 1 2 3 33 33 H 1.08996 * 109.46928 * 300.09218 * 1 2 3 34 34 H 1.08993 * 109.46823 * 60.09002 * 1 2 3 35 35 H 1.09001 * 109.62706 * 306.91215 * 4 2 1 36 36 H 1.08997 * 109.62802 * 67.28935 * 4 2 1 37 37 H 1.08995 * 110.48953 * 274.93602 * 10 8 6 38 38 H 1.08999 * 110.48725 * 37.58064 * 10 8 6 39 39 H 1.09000 * 118.05975 * 346.17379 * 13 11 10 40 40 H 1.08993 * 117.16676 * 200.83642 * 13 11 10 41 41 H 1.09008 * 110.48595 * 330.32184 * 16 14 13 42 42 H 1.09000 * 110.48905 * 207.67866 * 16 14 13 43 43 H 1.08990 * 109.61746 * 190.95287 * 17 5 4 44 44 H 1.09001 * 109.67767 * 70.46879 * 17 5 4 45 45 H 1.08993 * 111.01515 * 324.97467 * 19 18 17 46 46 H 1.08995 * 111.01894 * 88.82350 * 19 18 17 47 47 H 1.09005 * 110.34672 * 155.23177 * 20 19 18 48 48 H 1.09000 * 110.34934 * 277.50695 * 20 19 18 49 49 H 0.97000 * 119.99771 * 180.02562 * 25 24 22 50 50 H 1.08994 * 109.91411 * 242.15281 * 30 21 20 51 51 H 1.09005 * 109.90967 * 120.88156 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7245 -1.2501 5 7 3.5036 -0.8649 -1.1487 6 6 4.3109 -0.4777 -2.1560 7 8 3.8333 -0.0910 -3.2016 8 6 5.8072 -0.5250 -1.9832 9 1 6.0828 -0.3026 -0.9523 10 6 6.3664 -1.9032 -2.4157 11 6 7.8412 -1.6153 -2.7738 12 1 8.6106 -2.1057 -2.1774 13 6 8.1760 -1.1504 -4.2191 14 6 7.9283 -0.1180 -3.1174 15 1 8.7571 0.4968 -2.7664 16 6 6.5041 0.4536 -2.9609 17 6 4.0518 -1.4407 0.0963 18 6 3.4235 -0.7155 1.2817 19 6 3.9922 0.7172 1.3885 20 6 3.8337 1.0008 2.9043 21 7 4.1109 -0.2892 3.5627 22 6 4.5419 -0.4509 4.8525 23 1 4.7174 -1.4424 5.2429 24 6 4.7531 0.6597 5.6580 25 7 4.5386 1.8681 5.1823 26 14 5.3416 0.4392 7.4172 27 1 6.6527 -0.2582 7.4168 28 1 5.4883 1.7696 8.0605 29 1 4.3512 -0.3690 8.1728 30 6 3.8475 -1.3743 2.6037 31 8 2.0080 -0.6775 1.1664 32 1 -0.3632 -1.0276 0.0017 33 1 -0.3633 0.5152 0.8891 34 1 -0.3633 0.5124 -0.8907 35 1 1.5830 -1.7110 -1.3153 36 1 1.7906 -0.1445 -2.1381 37 1 6.3023 -2.6159 -1.5937 38 1 5.8294 -2.2760 -3.2879 39 1 7.4082 -1.2626 -4.9846 40 1 9.2024 -1.2852 -4.5600 41 1 5.9894 0.4640 -3.9217 42 1 6.5401 1.4566 -2.5356 43 1 5.1334 -1.3076 0.1158 44 1 3.8116 -2.5027 0.1463 45 1 5.0411 0.7444 1.0933 46 1 3.4032 1.4168 0.7955 47 1 4.5535 1.7534 3.2264 48 1 2.8176 1.3282 3.1244 49 1 4.6866 2.6441 5.7451 50 1 3.0450 -2.0114 2.9752 51 1 4.7522 -1.9631 2.4516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071201996.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:53 Heat of formation + Delta-G solvation = -32.967896 kcal Electronic energy + Delta-G solvation = -30977.447648 eV Core-core repulsion = 27070.823324 eV Total energy + Delta-G solvation = -3906.624324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.04795 -40.72723 -39.25137 -37.85494 -35.92947 -34.78245 -33.21674 -32.58477 -31.03245 -29.97276 -29.26802 -27.92186 -27.28667 -25.49855 -24.41759 -23.11403 -21.98539 -21.74709 -20.77697 -20.63527 -19.87750 -18.97265 -18.45480 -17.91027 -17.19448 -16.95122 -16.82083 -16.41235 -15.95748 -15.73405 -15.58612 -14.95412 -14.77032 -14.50189 -14.32782 -14.10591 -14.09303 -13.94183 -13.77256 -13.51493 -13.18133 -13.01662 -12.91771 -12.84401 -12.72001 -12.55011 -12.31773 -12.25903 -12.20610 -12.17187 -12.02758 -11.98315 -11.85468 -11.59162 -11.45558 -10.97121 -10.89649 -10.80061 -10.72025 -10.52460 -9.57817 -8.89629 -7.75818 -5.20640 1.44080 1.49049 1.52252 1.58399 1.77446 2.47991 2.60926 2.68515 3.21492 3.34758 3.46473 3.60472 3.67607 3.75545 3.77041 3.81314 3.88684 3.98094 4.07539 4.13124 4.18847 4.24072 4.32828 4.42629 4.44415 4.47873 4.51836 4.55762 4.63218 4.69474 4.70887 4.73678 4.82656 4.87502 4.90666 4.95953 5.00373 5.06007 5.06862 5.10626 5.15648 5.20712 5.30844 5.33054 5.42988 5.47407 5.57417 5.77198 6.22491 6.28671 6.32389 7.01521 7.10521 7.77593 8.41775 9.26336 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.003790 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.616571 B = 7385.865441 C = 9094.335694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.067 3.933 3 H 0.050 0.950 4 C 0.088 3.912 5 N -0.610 5.610 6 C 0.528 3.472 7 O -0.576 6.576 8 C -0.115 4.115 9 H 0.108 0.892 10 C -0.077 4.077 11 C -0.166 4.166 12 H 0.129 0.871 13 C -0.149 4.149 14 C -0.168 4.168 15 H 0.120 0.880 16 C -0.081 4.081 17 C 0.100 3.900 18 C 0.105 3.895 19 C -0.151 4.151 20 C 0.167 3.833 21 N -0.622 5.622 22 C -0.237 4.237 23 H 0.087 0.913 24 C -0.066 4.066 25 N -0.951 5.951 26 Si 0.981 3.019 27 H -0.272 1.272 28 H -0.296 1.296 29 H -0.281 1.281 30 C 0.148 3.852 31 O -0.374 6.374 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.073 0.927 48 H -0.025 1.025 49 H 0.246 0.754 50 H 0.029 0.971 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -7.776 -17.965 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.009 3.991 3 H 0.068 0.932 4 C -0.035 4.035 5 N -0.342 5.342 6 C 0.318 3.682 7 O -0.456 6.456 8 C -0.136 4.136 9 H 0.126 0.874 10 C -0.114 4.114 11 C -0.183 4.183 12 H 0.147 0.853 13 C -0.185 4.185 14 C -0.186 4.186 15 H 0.138 0.862 16 C -0.119 4.119 17 C -0.022 4.022 18 C 0.064 3.936 19 C -0.189 4.189 20 C 0.042 3.958 21 N -0.348 5.348 22 C -0.366 4.366 23 H 0.104 0.896 24 C -0.259 4.259 25 N -0.601 5.601 26 Si 0.809 3.191 27 H -0.198 1.198 28 H -0.223 1.223 29 H -0.207 1.207 30 C 0.023 3.977 31 O -0.294 6.294 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.134 0.866 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.132 0.868 44 H 0.117 0.883 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.091 0.909 48 H -0.007 1.007 49 H 0.055 0.945 50 H 0.047 0.953 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.273 -7.555 -18.199 19.835 hybrid contribution -0.018 0.649 1.192 1.358 sum 2.255 -6.905 -17.007 18.493 Atomic orbital electron populations 1.21699 0.90506 1.03802 1.03309 1.22641 0.96854 0.95107 0.84473 0.93186 1.22331 0.79827 1.02413 0.98901 1.48352 1.07017 1.62199 1.16625 1.20851 0.89776 0.75273 0.82251 1.90640 1.77669 1.49088 1.28171 1.22581 0.89343 0.99031 1.02636 0.87444 1.21876 0.93827 0.94011 1.01736 1.23698 0.97066 0.98050 0.99529 0.85328 1.23524 1.03122 1.01076 0.90804 1.23236 0.97631 0.92390 1.05378 0.86203 1.21823 0.93558 0.97782 0.98774 1.22410 1.00227 0.98409 0.81195 1.22104 0.81499 0.95216 0.94787 1.23326 1.00944 0.96806 0.97835 1.21561 0.96637 0.89492 0.88113 1.44769 1.78161 1.01923 1.09961 1.19455 1.36244 0.93464 0.87452 0.89560 1.25630 1.02678 0.95028 1.02543 1.70058 1.56292 0.97558 1.36162 0.85116 0.78483 0.76192 0.79321 1.19772 1.22271 1.20686 1.21262 0.98071 0.91080 0.87316 1.87891 1.20281 1.77125 1.44092 0.90762 0.92472 0.88692 0.89366 0.88573 0.88866 0.91741 0.89449 0.86604 0.91433 0.91130 0.86823 0.88339 0.90288 0.91475 0.90880 1.00695 0.94456 0.95279 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.57 71.98 0.69 -2.28 16 2 C 0.07 1.85 3.17 30.69 0.10 1.94 16 3 H 0.05 1.53 6.13 -2.39 -0.01 1.51 16 4 C 0.09 2.13 5.88 86.34 0.51 2.64 16 5 N -0.61 -15.32 2.93 -817.33 -2.40 -17.71 16 6 C 0.53 13.99 6.90 87.66 0.60 14.59 16 7 O -0.58 -18.73 15.30 -3.03 -0.05 -18.78 16 8 C -0.11 -2.45 2.36 -10.25 -0.02 -2.47 16 9 H 0.11 2.22 6.45 -2.39 -0.02 2.20 16 10 C -0.08 -1.34 6.11 31.74 0.19 -1.15 16 11 C -0.17 -2.57 7.03 -9.15 -0.06 -2.64 16 12 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 13 C -0.15 -2.20 10.22 31.44 0.32 -1.88 16 14 C -0.17 -2.88 6.85 -10.07 -0.07 -2.95 16 15 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 16 C -0.08 -1.75 5.91 31.67 0.19 -1.56 16 17 C 0.10 2.44 5.08 85.98 0.44 2.87 16 18 C 0.10 3.46 0.83 -10.22 -0.01 3.45 16 19 C -0.15 -5.62 5.91 31.80 0.19 -5.43 16 20 C 0.17 8.37 5.88 86.89 0.51 8.88 16 21 N -0.62 -31.54 3.40 -692.50 -2.36 -33.89 16 22 C -0.24 -13.05 10.28 84.03 0.86 -12.19 16 23 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 24 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 25 N -0.95 -56.69 10.09 21.65 0.22 -56.47 16 26 Si 0.98 45.05 29.55 68.60 2.03 47.08 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 29 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 30 C 0.15 5.81 6.62 86.47 0.57 6.38 16 31 O -0.37 -12.82 9.87 -148.98 -1.47 -14.29 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 2.38 7.11 -2.39 -0.02 2.36 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.25 8.04 -2.39 -0.02 1.23 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.67 7.23 -2.38 -0.02 1.65 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.11 2.42 5.41 -2.39 -0.01 2.41 16 44 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 45 H 0.08 2.73 7.86 -2.39 -0.02 2.71 16 46 H 0.07 2.43 5.98 -2.39 -0.01 2.42 16 47 H 0.07 4.15 5.88 -2.38 -0.01 4.13 16 48 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 49 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 50 H 0.03 1.20 8.06 -2.39 -0.02 1.18 16 51 H 0.06 2.20 7.79 -2.38 -0.02 2.18 16 Total: -1.00 -69.70 386.36 2.36 -67.34 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.91 Total: 21.77 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 5.47 Total: 4.95 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -4.53 Total: -108.07 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -1.52 Total: -33.06 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -69.70 2.36 -67.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071201996.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.367 kcal (2) G-P(sol) polarization free energy of solvation -69.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds