Wall clock time and date at job start Tue Mar 31 2020 18:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.50695 * 2 1 4 4 C 1.52849 * 109.58440 * 239.97979 * 2 1 3 5 5 N 1.47173 * 108.75824 * 187.15581 * 4 2 1 6 6 C 1.34770 * 121.07405 * 231.25605 * 5 4 2 7 7 O 1.21285 * 119.99930 * 184.98722 * 6 5 4 8 8 C 1.50702 * 120.00400 * 4.98683 * 6 5 4 9 9 C 1.52999 * 110.91491 * 295.82020 * 8 6 5 10 10 C 1.54638 * 111.03279 * 59.78490 * 8 6 5 11 11 C 1.51174 * 104.69260 * 93.46768 * 10 8 6 12 12 C 1.30522 * 111.11991 * 16.38046 * 11 10 8 13 13 C 1.51106 * 111.10467 * 0.03195 * 12 11 10 14 14 C 1.47317 * 117.84473 * 50.98076 * 5 4 2 15 15 C 1.52364 * 108.46419 * 311.12320 * 14 5 4 16 16 C 1.54357 * 110.40842 * 286.32425 * 15 14 5 17 17 C 1.54469 * 102.87845 * 207.64320 * 16 15 14 18 18 N 1.47086 * 107.29482 * 21.49690 * 17 16 15 19 19 C 1.36938 * 125.62896 * 180.99694 * 18 17 16 20 20 H 1.08000 * 119.99382 * 174.08254 * 19 18 17 21 21 C 1.38804 * 120.00162 * 354.08297 * 19 18 17 22 22 N 1.31618 * 120.00339 * 6.63238 * 21 19 18 23 23 Si 1.86801 * 120.00079 * 186.63772 * 21 19 18 24 24 H 1.48500 * 109.46969 * 94.98378 * 23 21 19 25 25 H 1.48499 * 109.47057 * 214.98150 * 23 21 19 26 26 H 1.48504 * 109.46971 * 334.98605 * 23 21 19 27 27 C 1.47575 * 108.73913 * 0.99497 * 18 17 16 28 28 O 1.41876 * 111.47861 * 49.88618 * 15 14 5 29 29 H 1.08998 * 109.47181 * 299.90504 * 1 2 3 30 30 H 1.08998 * 109.46683 * 59.90855 * 1 2 3 31 31 H 1.09007 * 109.46698 * 179.90086 * 1 2 3 32 32 H 1.09004 * 109.56075 * 67.34363 * 4 2 1 33 33 H 1.08999 * 109.47288 * 306.91074 * 4 2 1 34 34 H 1.08996 * 109.46997 * 55.52940 * 9 8 6 35 35 H 1.08997 * 109.47099 * 295.53352 * 9 8 6 36 36 H 1.09004 * 109.47090 * 175.53202 * 9 8 6 37 37 H 1.09006 * 110.38611 * 212.24710 * 10 8 6 38 38 H 1.08991 * 110.39241 * 334.62675 * 10 8 6 39 39 H 1.07996 * 124.43089 * 196.40166 * 11 10 8 40 40 H 1.07999 * 124.44873 * 180.02562 * 12 11 10 41 41 H 1.08999 * 110.38322 * 224.75126 * 13 12 11 42 42 H 1.08996 * 110.48048 * 102.42658 * 13 12 11 43 43 H 1.09005 * 109.64111 * 70.81639 * 14 5 4 44 44 H 1.09007 * 109.63571 * 191.22657 * 14 5 4 45 45 H 1.08998 * 110.73550 * 325.99266 * 16 15 14 46 46 H 1.09005 * 110.72821 * 89.30210 * 16 15 14 47 47 H 1.08998 * 109.87772 * 262.07312 * 17 16 15 48 48 H 1.08999 * 109.99961 * 140.98795 * 17 16 15 49 49 H 0.96994 * 120.00630 * 180.02562 * 22 21 19 50 50 H 1.09001 * 110.37460 * 217.86261 * 27 18 17 51 51 H 1.08994 * 110.37370 * 95.51478 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0424 -0.7205 -1.2469 5 7 3.5038 -0.8620 -1.1448 6 6 4.3123 -0.4726 -2.1503 7 8 5.5053 -0.6805 -2.0843 8 6 3.7340 0.2210 -3.3568 9 6 2.7886 -0.7086 -4.1204 10 6 3.0184 1.5313 -2.9537 11 6 4.0687 2.6067 -3.1139 12 6 5.0694 2.1828 -3.8367 13 6 4.8537 0.7545 -4.2802 14 6 4.0545 -1.4373 0.0946 15 6 3.4214 -0.7218 1.2815 16 6 4.0046 0.7000 1.4265 17 6 3.8579 0.9797 2.9386 18 7 3.7485 -0.3215 3.6154 19 6 3.5849 -0.5090 4.9620 20 1 3.4192 -1.5021 5.3527 21 6 3.6321 0.5773 5.8248 22 7 3.7029 1.7993 5.3411 23 14 3.5953 0.3049 7.6725 24 1 4.9844 0.2790 8.1968 25 1 2.8421 1.4085 8.3206 26 1 2.9301 -0.9893 7.9688 27 6 3.8441 -1.3917 2.6038 28 8 2.0080 -0.6764 1.1672 29 1 -0.3633 0.5123 0.8908 30 1 -0.3632 0.5153 -0.8892 31 1 -0.3633 -1.0278 -0.0018 32 1 1.7920 -0.1381 -2.1336 33 1 1.5827 -1.7067 -1.3113 34 1 2.0163 -1.0761 -3.4448 35 1 3.3524 -1.5513 -4.5203 36 1 2.3238 -0.1606 -4.9400 37 1 2.1748 1.7228 -3.6170 38 1 2.6834 1.4779 -1.9179 39 1 4.0000 3.5958 -2.6859 40 1 5.9375 2.7752 -4.0854 41 1 5.7660 0.1733 -4.1456 42 1 4.5343 0.7227 -5.3218 43 1 3.8202 -2.5008 0.1405 44 1 5.1356 -1.2991 0.1137 45 1 5.0535 0.7189 1.1306 46 1 3.4251 1.4160 0.8436 47 1 2.9592 1.5690 3.1209 48 1 4.7333 1.5158 3.3052 49 1 3.7363 2.5584 5.9440 50 1 3.1649 -2.2080 2.8496 51 1 4.8685 -1.7572 2.5336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071209304.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:57 Heat of formation + Delta-G solvation = -13.964889 kcal Electronic energy + Delta-G solvation = -31618.411442 eV Core-core repulsion = 27712.611150 eV Total energy + Delta-G solvation = -3905.800292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.25802 -39.49133 -37.51501 -36.41956 -34.71612 -33.18322 -31.98726 -31.33671 -29.31268 -28.67694 -28.24573 -26.61893 -25.96927 -25.52217 -23.84464 -22.02476 -21.69732 -20.18301 -19.42106 -19.13440 -18.63809 -17.04391 -16.86145 -16.52314 -16.29237 -15.66243 -15.36474 -14.72693 -14.57382 -14.36386 -14.19296 -13.71011 -13.51743 -13.34832 -13.18684 -12.95417 -12.83245 -12.56218 -12.39972 -12.29069 -12.23165 -11.99055 -11.93826 -11.69683 -11.59347 -11.47968 -11.29102 -10.99840 -10.91168 -10.89477 -10.85651 -10.28951 -10.23049 -10.07546 -10.02742 -9.71876 -9.55865 -9.51220 -9.04613 -8.53054 -8.35190 -6.78223 -5.67463 -2.99658 2.13214 2.58333 2.85056 3.43681 3.48610 3.50670 3.85441 4.14745 4.25569 4.39655 4.52406 4.67695 4.72915 4.86080 5.00256 5.03975 5.09622 5.16236 5.22171 5.27845 5.35402 5.42586 5.43792 5.47203 5.50746 5.52697 5.59210 5.60241 5.66305 5.75705 5.79031 5.82185 5.85451 5.92050 5.94682 6.00945 6.15819 6.17816 6.35915 6.40582 6.49911 6.52671 6.57354 6.66595 6.72680 7.35451 7.59055 7.66436 7.69312 7.86877 8.13908 8.29292 9.25738 9.85971 10.52270 11.44865 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018902 B = 0.003418 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.935489 B = 8189.395749 C = 8481.412525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 H 0.065 0.935 4 C 0.066 3.934 5 N -0.607 5.607 6 C 0.534 3.466 7 O -0.535 6.535 8 C -0.088 4.088 9 C -0.146 4.146 10 C -0.095 4.095 11 C -0.172 4.172 12 C -0.157 4.157 13 C -0.084 4.084 14 C 0.098 3.902 15 C 0.094 3.906 16 C -0.164 4.164 17 C 0.185 3.815 18 N -0.599 5.599 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.153 3.847 28 O -0.343 6.343 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.043 0.957 48 H 0.045 0.955 49 H 0.251 0.749 50 H 0.050 0.950 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 -2.005 -22.053 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.008 3.992 3 H 0.082 0.918 4 C -0.057 4.057 5 N -0.340 5.340 6 C 0.322 3.678 7 O -0.412 6.412 8 C -0.092 4.092 9 C -0.203 4.203 10 C -0.132 4.132 11 C -0.190 4.190 12 C -0.175 4.175 13 C -0.121 4.121 14 C -0.025 4.025 15 C 0.052 3.948 16 C -0.202 4.202 17 C 0.061 3.939 18 N -0.325 5.325 19 C -0.353 4.353 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.026 3.974 28 O -0.262 6.262 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.119 0.881 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.408 -2.084 -21.676 22.217 hybrid contribution 0.119 0.204 0.852 0.884 sum -4.289 -1.880 -20.824 21.344 Atomic orbital electron populations 1.21701 0.92450 1.03019 1.02777 1.22399 0.95352 0.96084 0.85346 0.91767 1.22809 0.80417 1.02154 1.00307 1.48066 1.06625 1.62556 1.16785 1.20198 0.86287 0.77887 0.83402 1.90668 1.15296 1.55839 1.79364 1.21585 0.97496 0.95785 0.94289 1.22049 0.98713 0.99194 1.00314 1.21676 0.97822 0.91185 1.02564 1.23226 0.96127 0.99472 1.00183 1.23239 0.98549 0.96684 0.99042 1.21355 0.98591 0.94221 0.97944 1.22149 1.00483 0.97381 0.82470 1.22393 0.81020 0.96466 0.94905 1.23340 0.99914 0.95720 1.01260 1.21106 1.00712 0.87828 0.84282 1.44422 1.85814 1.00026 1.02263 1.19057 1.42140 0.93798 0.80338 0.90376 1.24796 1.02249 0.95273 0.98032 1.69979 1.56930 0.97103 1.32820 0.86112 0.77468 0.77018 0.85273 1.21671 1.21838 1.20625 1.21333 0.97518 0.92562 0.85967 1.87914 1.20173 1.76553 1.41541 0.90987 0.91286 0.91720 0.87939 0.90550 0.91053 0.91699 0.91099 0.89471 0.90210 0.85552 0.85686 0.89248 0.90047 0.91021 0.88132 0.91752 0.92124 0.93928 0.93672 0.93848 0.93155 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.57 37.16 0.36 -1.16 16 2 C 0.07 0.89 3.05 -26.80 -0.08 0.81 16 3 H 0.06 0.92 5.43 -51.93 -0.28 0.63 16 4 C 0.07 0.72 3.51 -3.75 -0.01 0.71 16 5 N -0.61 -8.28 2.90 -172.95 -0.50 -8.78 16 6 C 0.53 7.55 6.54 -10.99 -0.07 7.48 16 7 O -0.54 -9.47 15.03 5.55 0.08 -9.39 16 8 C -0.09 -0.91 0.58 -153.94 -0.09 -1.00 16 9 C -0.15 -1.10 8.13 37.16 0.30 -0.80 16 10 C -0.10 -0.91 4.67 -26.79 -0.13 -1.03 16 11 C -0.17 -1.79 10.78 -35.66 -0.38 -2.17 16 12 C -0.16 -1.65 10.77 -35.69 -0.38 -2.03 16 13 C -0.08 -0.86 5.79 -26.83 -0.16 -1.02 16 14 C 0.10 1.54 5.27 -3.92 -0.02 1.52 16 15 C 0.09 1.71 0.84 -89.64 -0.08 1.64 16 16 C -0.16 -3.27 5.88 -25.25 -0.15 -3.41 16 17 C 0.19 4.67 5.39 -2.95 -0.02 4.66 16 18 N -0.60 -15.72 3.40 -170.30 -0.58 -16.30 16 19 C -0.23 -6.41 10.26 -15.06 -0.15 -6.56 16 20 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 21 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 22 N -0.92 -27.56 10.35 55.49 0.57 -26.99 16 23 Si 0.91 22.47 29.56 -169.99 -5.02 17.44 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.15 3.26 6.42 -2.86 -0.02 3.24 16 28 O -0.34 -6.18 9.92 -35.22 -0.35 -6.53 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.87 3.37 -51.93 -0.17 0.70 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.50 5.13 -51.93 -0.27 0.23 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.40 8.04 -51.93 -0.42 -0.01 16 37 H 0.09 0.63 7.82 -51.93 -0.41 0.22 16 38 H 0.08 0.84 5.19 -51.93 -0.27 0.57 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.09 1.09 6.92 -51.93 -0.36 0.73 16 42 H 0.08 0.66 7.89 -51.93 -0.41 0.25 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.10 1.71 6.91 -51.92 -0.36 1.35 16 45 H 0.06 1.28 7.83 -51.93 -0.41 0.87 16 46 H 0.06 1.13 6.10 -51.93 -0.32 0.82 16 47 H 0.04 1.19 7.54 -51.93 -0.39 0.80 16 48 H 0.05 1.26 7.36 -51.93 -0.38 0.88 16 49 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 50 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.04 0.75 7.99 -51.93 -0.42 0.34 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -33.66 378.19 -9.48 -43.14 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.21 Total: 1.15 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.18 Total: 0.56 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.51 Total: -52.07 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.27 Total: -15.92 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.66 -9.48 -43.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071209304.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.174 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds