Wall clock time and date at job start Tue Mar 31 2020 18:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.50695 * 2 1 4 4 C 1.52849 * 109.58440 * 239.97979 * 2 1 3 5 5 N 1.47173 * 108.75824 * 187.15581 * 4 2 1 6 6 C 1.34770 * 121.07405 * 231.25605 * 5 4 2 7 7 O 1.21285 * 119.99930 * 184.98722 * 6 5 4 8 8 C 1.50702 * 120.00400 * 4.98683 * 6 5 4 9 9 C 1.52999 * 110.91491 * 295.82020 * 8 6 5 10 10 C 1.54638 * 111.03279 * 59.78490 * 8 6 5 11 11 C 1.51174 * 104.69260 * 93.46768 * 10 8 6 12 12 C 1.30522 * 111.11991 * 16.38046 * 11 10 8 13 13 C 1.51106 * 111.10467 * 0.03195 * 12 11 10 14 14 C 1.47317 * 117.84473 * 50.98076 * 5 4 2 15 15 C 1.52364 * 108.46419 * 311.12320 * 14 5 4 16 16 C 1.54357 * 110.40842 * 286.32425 * 15 14 5 17 17 C 1.54469 * 102.87845 * 207.64320 * 16 15 14 18 18 N 1.47086 * 107.29482 * 21.49690 * 17 16 15 19 19 C 1.36938 * 125.62896 * 180.99694 * 18 17 16 20 20 H 1.08000 * 119.99382 * 174.08254 * 19 18 17 21 21 C 1.38804 * 120.00162 * 354.08297 * 19 18 17 22 22 N 1.31618 * 120.00339 * 6.63238 * 21 19 18 23 23 Si 1.86801 * 120.00079 * 186.63772 * 21 19 18 24 24 H 1.48500 * 109.46969 * 94.98378 * 23 21 19 25 25 H 1.48499 * 109.47057 * 214.98150 * 23 21 19 26 26 H 1.48504 * 109.46971 * 334.98605 * 23 21 19 27 27 C 1.47575 * 108.73913 * 0.99497 * 18 17 16 28 28 O 1.41876 * 111.47861 * 49.88618 * 15 14 5 29 29 H 1.08998 * 109.47181 * 299.90504 * 1 2 3 30 30 H 1.08998 * 109.46683 * 59.90855 * 1 2 3 31 31 H 1.09007 * 109.46698 * 179.90086 * 1 2 3 32 32 H 1.09004 * 109.56075 * 67.34363 * 4 2 1 33 33 H 1.08999 * 109.47288 * 306.91074 * 4 2 1 34 34 H 1.08996 * 109.46997 * 55.52940 * 9 8 6 35 35 H 1.08997 * 109.47099 * 295.53352 * 9 8 6 36 36 H 1.09004 * 109.47090 * 175.53202 * 9 8 6 37 37 H 1.09006 * 110.38611 * 212.24710 * 10 8 6 38 38 H 1.08991 * 110.39241 * 334.62675 * 10 8 6 39 39 H 1.07996 * 124.43089 * 196.40166 * 11 10 8 40 40 H 1.07999 * 124.44873 * 180.02562 * 12 11 10 41 41 H 1.08999 * 110.38322 * 224.75126 * 13 12 11 42 42 H 1.08996 * 110.48048 * 102.42658 * 13 12 11 43 43 H 1.09005 * 109.64111 * 70.81639 * 14 5 4 44 44 H 1.09007 * 109.63571 * 191.22657 * 14 5 4 45 45 H 1.08998 * 110.73550 * 325.99266 * 16 15 14 46 46 H 1.09005 * 110.72821 * 89.30210 * 16 15 14 47 47 H 1.08998 * 109.87772 * 262.07312 * 17 16 15 48 48 H 1.08999 * 109.99961 * 140.98795 * 17 16 15 49 49 H 0.96994 * 120.00630 * 180.02562 * 22 21 19 50 50 H 1.09001 * 110.37460 * 217.86261 * 27 18 17 51 51 H 1.08994 * 110.37370 * 95.51478 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0424 -0.7205 -1.2469 5 7 3.5038 -0.8620 -1.1448 6 6 4.3123 -0.4726 -2.1503 7 8 5.5053 -0.6805 -2.0843 8 6 3.7340 0.2210 -3.3568 9 6 2.7886 -0.7086 -4.1204 10 6 3.0184 1.5313 -2.9537 11 6 4.0687 2.6067 -3.1139 12 6 5.0694 2.1828 -3.8367 13 6 4.8537 0.7545 -4.2802 14 6 4.0545 -1.4373 0.0946 15 6 3.4214 -0.7218 1.2815 16 6 4.0046 0.7000 1.4265 17 6 3.8579 0.9797 2.9386 18 7 3.7485 -0.3215 3.6154 19 6 3.5849 -0.5090 4.9620 20 1 3.4192 -1.5021 5.3527 21 6 3.6321 0.5773 5.8248 22 7 3.7029 1.7993 5.3411 23 14 3.5953 0.3049 7.6725 24 1 4.9844 0.2790 8.1968 25 1 2.8421 1.4085 8.3206 26 1 2.9301 -0.9893 7.9688 27 6 3.8441 -1.3917 2.6038 28 8 2.0080 -0.6764 1.1672 29 1 -0.3633 0.5123 0.8908 30 1 -0.3632 0.5153 -0.8892 31 1 -0.3633 -1.0278 -0.0018 32 1 1.7920 -0.1381 -2.1336 33 1 1.5827 -1.7067 -1.3113 34 1 2.0163 -1.0761 -3.4448 35 1 3.3524 -1.5513 -4.5203 36 1 2.3238 -0.1606 -4.9400 37 1 2.1748 1.7228 -3.6170 38 1 2.6834 1.4779 -1.9179 39 1 4.0000 3.5958 -2.6859 40 1 5.9375 2.7752 -4.0854 41 1 5.7660 0.1733 -4.1456 42 1 4.5343 0.7227 -5.3218 43 1 3.8202 -2.5008 0.1405 44 1 5.1356 -1.2991 0.1137 45 1 5.0535 0.7189 1.1306 46 1 3.4251 1.4160 0.8436 47 1 2.9592 1.5690 3.1209 48 1 4.7333 1.5158 3.3052 49 1 3.7363 2.5584 5.9440 50 1 3.1649 -2.2080 2.8496 51 1 4.8685 -1.7572 2.5336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071209304.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:55 Heat of formation + Delta-G solvation = -35.176874 kcal Electronic energy + Delta-G solvation = -31619.331262 eV Core-core repulsion = 27712.611150 eV Total energy + Delta-G solvation = -3906.720112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.32180 -40.73919 -38.53472 -38.01412 -35.93772 -34.82810 -33.13219 -32.62674 -31.09887 -30.06414 -29.18508 -27.63849 -27.37133 -26.46060 -25.58983 -23.16393 -22.86811 -22.05274 -20.62603 -20.13691 -19.59093 -18.98502 -17.93673 -17.73913 -17.44349 -16.81073 -16.54566 -16.40861 -15.95505 -15.63146 -15.59978 -15.13272 -15.02904 -14.35795 -14.23225 -14.04192 -13.88000 -13.69389 -13.59586 -13.55770 -13.25329 -13.13986 -13.08156 -12.98252 -12.81569 -12.77103 -12.64721 -12.25524 -12.20802 -12.10660 -12.06209 -12.01134 -11.88369 -11.80173 -11.59747 -11.40530 -10.94056 -10.70485 -10.67875 -9.82083 -9.54809 -8.92554 -7.87114 -5.22204 1.35716 1.44760 1.47452 1.52453 1.56396 1.79764 2.48044 2.60364 3.30451 3.32065 3.40666 3.49090 3.56343 3.64454 3.81970 3.85524 3.91063 4.01955 4.07064 4.13028 4.33075 4.35755 4.39134 4.45109 4.50696 4.57689 4.64221 4.72381 4.73652 4.75164 4.76631 4.80329 4.82880 4.91934 4.94018 4.96924 5.02220 5.03905 5.10663 5.14435 5.25192 5.31116 5.35771 5.42197 5.55359 5.63960 5.67491 5.94809 6.15350 6.30826 6.38447 7.06476 7.06988 7.73285 8.38976 9.24406 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018902 B = 0.003418 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.935489 B = 8189.395749 C = 8481.412525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.058 3.942 3 H 0.052 0.948 4 C 0.071 3.929 5 N -0.607 5.607 6 C 0.527 3.473 7 O -0.579 6.579 8 C -0.085 4.085 9 C -0.143 4.143 10 C -0.093 4.093 11 C -0.183 4.183 12 C -0.172 4.172 13 C -0.084 4.084 14 C 0.106 3.894 15 C 0.112 3.888 16 C -0.147 4.147 17 C 0.199 3.801 18 N -0.620 5.620 19 C -0.242 4.242 20 H 0.085 0.915 21 C -0.066 4.066 22 N -0.952 5.952 23 Si 0.981 3.019 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.265 1.265 27 C 0.146 3.854 28 O -0.369 6.369 29 H 0.048 0.952 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.070 0.930 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.005 0.995 48 H 0.006 0.994 49 H 0.246 0.754 50 H 0.053 0.947 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 -3.039 -24.407 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.000 4.000 3 H 0.070 0.930 4 C -0.050 4.050 5 N -0.339 5.339 6 C 0.317 3.683 7 O -0.458 6.458 8 C -0.088 4.088 9 C -0.200 4.200 10 C -0.130 4.130 11 C -0.201 4.201 12 C -0.190 4.190 13 C -0.121 4.121 14 C -0.018 4.018 15 C 0.070 3.930 16 C -0.186 4.186 17 C 0.074 3.926 18 N -0.346 5.346 19 C -0.371 4.371 20 H 0.103 0.897 21 C -0.258 4.258 22 N -0.601 5.601 23 Si 0.808 3.192 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.190 1.190 27 C 0.020 3.980 28 O -0.288 6.288 29 H 0.068 0.932 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.153 0.847 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.140 0.860 38 H 0.088 0.912 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.024 0.976 48 H 0.025 0.975 49 H 0.056 0.944 50 H 0.072 0.928 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.456 -3.148 -24.060 25.109 hybrid contribution 0.751 0.546 1.572 1.826 sum -5.704 -2.602 -22.488 23.346 Atomic orbital electron populations 1.21740 0.90130 1.03890 1.03645 1.22744 0.97125 0.95343 0.84805 0.92980 1.22995 0.78477 1.03487 1.00084 1.48146 1.07892 1.62121 1.15787 1.21005 0.85808 0.77192 0.84272 1.90651 1.17328 1.57489 1.80379 1.21658 0.98062 0.96379 0.92681 1.22094 0.98151 0.98764 1.00969 1.21748 0.98426 0.90085 1.02761 1.23449 0.96603 1.00118 0.99925 1.23428 0.98919 0.97110 0.99541 1.21386 0.97717 0.93484 0.99490 1.21863 0.99337 0.98002 0.82566 1.22029 0.81863 0.94558 0.94504 1.23129 1.00309 0.97761 0.97360 1.20755 0.97112 0.87180 0.87583 1.44702 1.85708 1.01550 1.02680 1.19483 1.41621 0.94151 0.81798 0.89749 1.25687 1.02443 0.95029 1.02684 1.70208 1.58092 0.97772 1.34035 0.85029 0.77339 0.77282 0.79508 1.21428 1.22085 1.18996 1.21528 0.98174 0.91743 0.86540 1.87877 1.19366 1.77250 1.44351 0.93233 0.87295 0.90839 0.84749 0.88608 0.90026 0.92025 0.88256 0.86026 0.91164 0.85211 0.85327 0.91739 0.87383 0.89353 0.89753 0.91878 0.90811 0.97632 0.97532 0.94441 0.92823 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.57 71.98 0.69 -1.83 16 2 C 0.06 1.42 3.05 30.55 0.09 1.51 16 3 H 0.05 1.41 5.43 -2.38 -0.01 1.40 16 4 C 0.07 1.31 3.51 86.20 0.30 1.61 16 5 N -0.61 -15.37 2.90 -819.50 -2.37 -17.75 16 6 C 0.53 14.12 6.54 87.66 0.57 14.70 16 7 O -0.58 -20.52 15.03 -3.04 -0.05 -20.56 16 8 C -0.08 -1.51 0.58 -51.81 -0.03 -1.54 16 9 C -0.14 -1.51 8.13 71.98 0.59 -0.93 16 10 C -0.09 -1.46 4.67 30.56 0.14 -1.32 16 11 C -0.18 -3.47 10.78 26.29 0.28 -3.19 16 12 C -0.17 -3.39 10.77 26.27 0.28 -3.10 16 13 C -0.08 -1.56 5.79 30.53 0.18 -1.39 16 14 C 0.11 3.24 5.27 86.01 0.45 3.69 16 15 C 0.11 4.09 0.84 -10.16 -0.01 4.08 16 16 C -0.15 -6.03 5.88 31.55 0.19 -5.84 16 17 C 0.20 10.57 5.39 86.77 0.47 11.04 16 18 N -0.62 -33.65 3.40 -692.71 -2.36 -36.00 16 19 C -0.24 -14.10 10.26 84.03 0.86 -13.24 16 20 H 0.08 4.68 7.84 -2.91 -0.02 4.65 16 21 C -0.07 -3.87 5.48 84.86 0.47 -3.40 16 22 N -0.95 -59.45 10.35 21.65 0.22 -59.22 16 23 Si 0.98 47.08 29.56 68.60 2.03 49.11 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.15 6.29 6.42 86.56 0.56 6.85 16 28 O -0.37 -13.00 9.92 -148.95 -1.48 -14.48 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.13 1.63 3.37 -2.38 -0.01 1.62 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 0.70 5.13 -2.39 -0.01 0.69 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 0.55 8.04 -2.38 -0.02 0.53 16 37 H 0.12 1.10 7.82 -2.38 -0.02 1.08 16 38 H 0.07 1.26 5.19 -2.39 -0.01 1.25 16 39 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 41 H 0.06 1.55 6.92 -2.39 -0.02 1.53 16 42 H 0.11 1.40 7.89 -2.39 -0.02 1.38 16 43 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.08 2.88 6.91 -2.38 -0.02 2.87 16 45 H 0.06 2.59 7.83 -2.39 -0.02 2.57 16 46 H 0.07 2.80 6.10 -2.38 -0.01 2.79 16 47 H 0.01 0.32 7.54 -2.39 -0.02 0.31 16 48 H 0.01 0.39 7.36 -2.39 -0.02 0.37 16 49 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.05 1.89 7.99 -2.39 -0.02 1.87 16 Total: -1.00 -77.90 378.19 3.00 -74.90 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.92 Total: 16.32 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 6.08 Total: 7.70 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -4.51 Total: -112.98 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -1.52 Total: -35.05 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -77.90 3.00 -74.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071209304.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.721 kcal (2) G-P(sol) polarization free energy of solvation -77.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds